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  • 1
    Publication Date: 2023-03-25
    Keywords: Biomarker; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Equivalent chain length; Geodia barretti, phospholipid fatty acid; Geodia barretti, phospholipid fatty acid, standard deviation; Hymedesmia paupertas, phospholipid fatty acid; Hymedesmia paupertas, phospholipid fatty acid, standard deviation; NorthAtlantic; Phospholipid fatty acid; SponGES; Vazella pourtalesii, phospholipid fatty acid; Vazella pourtalesii, phospholipid fatty acid, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 347 data points
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2023-02-24
    Keywords: Carbon, organic; Class; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Dry mass; Identification; Nitrogen, organic; NorthAtlantic; Species; SponGES; Treatment: food; Type; δ13C; δ15N
    Type: Dataset
    Format: text/tab-separated-values, 1165 data points
    Location Call Number Limitation Availability
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  • 3
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    PANGAEA
    In:  Supplement to: de Kluijver, Anna; Soetaert, Karline; Schulz, Kai Georg; Riebesell, Ulf; Bellerby, Richard G J; Middelburg, Jack J (2010): Phytoplankton-bacteria coupling under elevated CO2 levels: a stable isotope labelling study. Biogeosciences, 7(11), 3783-3797, https://doi.org/10.5194/bg-7-3783-2010
    Publication Date: 2023-05-12
    Description: The potential impact of rising carbon dioxide (CO2) on carbon transfer from phytoplankton to bacteria was investigated during the 2005 PeECE III mesocosm study in Bergen, Norway. Sets of mesocosms, in which a phytoplankton bloom was induced by nutrient addition, were incubated under 1x (~350 µatm), 2x (~700 µatm), and 3x present day CO2 (~1050 µatm) initial seawater and sustained atmospheric CO2 levels for 3 weeks. 13C labelled bicarbonate was added to all mesocosms to follow the transfer of carbon from dissolved inorganic carbon (DIC) into phytoplankton and subsequently heterotrophic bacteria, and settling particles. Isotope ratios of polar-lipid-derived fatty acids (PLFA) were used to infer the biomass and production of phytoplankton and bacteria. Phytoplankton PLFA were enriched within one day after label addition, whilst it took another 3 days before bacteria showed substantial enrichment. Group-specific primary production measurements revealed that coccolithophores showed higher primary production than green algae and diatoms. Elevated CO2 had a significant positive effect on post-bloom biomass of green algae, diatoms, and bacteria. A simple model based on measured isotope ratios of phytoplankton and bacteria revealed that CO2 had no significant effect on the carbon transfer efficiency from phytoplankton to bacteria during the bloom. There was no indication of CO2 effects on enhanced settling based on isotope mixing models during the phytoplankton bloom, but this could not be determined in the post-bloom phase. Our results suggest that CO2effects are most pronounced in the post-bloom phase, under nutrient limitation.
    Keywords: Bacteria, biomass as carbon; Bacteria, delta-delta, weighted; Calculated, see reference(s); Carbon, inorganic, dissolved; Coccolithophoridae, biomass as carbon; Diatoms, biomass as carbon; EPOCA; European Project on Ocean Acidification; Experimental treatment; Experiment day; Green algae, biomass as carbon; Growth rate; Labelled bacteria in sediment traps relative to labelled bacteria in water column; Labelled phytoplankton in sediment traps relative to labelled phytoplankoton in water column; modelled; Phytoplankton, biomass as carbon; Phytoplankton, delta-delta, weighted
    Type: Dataset
    Format: text/tab-separated-values, 3090 data points
    Location Call Number Limitation Availability
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  • 4
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    PANGAEA
    In:  Supplement to: Schoon, Petra L; de Kluijver, Anna; Middelburg, Jack J; Downing, John A; Sinninghe Damsté, Jaap S; Schouten, Stefan (2013): Influence of lake water pH and alkalinity on the distribution of core and intact polar branched glycerol dialkyl glycerol tetraethers (GDGTs) in lakes. Organic Geochemistry, 60, 72-82, https://doi.org/10.1016/j.orggeochem.2013.04.015
    Publication Date: 2023-05-12
    Description: Branched glycerol dialkyl glycerol tetraethers (GDGTs) are bacterial membrane lipids, ubiquitously present in soils and peat bogs, as well as in rivers, lakes and lake sediments. Their distribution in soil is controlled mainly by pH and mean annual air temperature, but the controls on their distribution in lake sediments are less well understood. Several studies have found a relationship between the distribution of branched GDGTs in lake sediments and average lake water pH, suggesting an aquatic source for them, besides that for soil transported to the lake via erosion. We sampled the surface water suspended particulate matter (SPM) from 23 lakes in Minnesota and Iowa (USA), that vary widely in pH, alkalinity and trophic state. The SPM was analyzed for the concentration and distributions of core lipid (presumed fossil origin) and intact polar lipid (IPL, presumed to derive from living cells) branched GDGTs. The presence of substantial amounts (18-48%) of IPL-derived branched GDGTs suggests that branched GDGTs are likely of autochthonous origin. Temperature estimates based on their distribution using lake-specific calibrations agree reasonably with water temperature at time of sampling and average air temperature of the season of sampling. Importantly, a strong correlation between the distribution of branched GDGTs and lake water pH was found (r**2 0.72), in agreement with a predominant in situ production. An stronger correlation was found with lake water alkalinity (r**2 0.83), although the underlying mechanism that controls the relationship is not understood. Our results raise the potential for reconstructing pH/alkalinity of past lake environments, which could provide important knowledge on past developments in lake water chemistry.
    Keywords: NIOZ_UU; NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 5
    Publication Date: 2023-06-27
    Keywords: Alkalinity, total; Area; Beaver; Beaver_Lake_Iowa; Beeds_Lake; Big_Creek_Lake; Brush_Shanty; Carbon, inorganic, dissolved; Coralville_Reservoir; Country; DEPTH, water; Event label; Hatch; Hickory_Grove; Horsehead; Kelly; Lake_MacBride; Latitude of event; Leighton; Little_Sand; Little_Split_Hand; Longitude of event; Lower_Pine_Lake; Meyers_Lake; NIOZ_UU; NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University; Nitrogen, total; Nitrogen/Phosphorus ratio; North America, U.S.A.; OLeary; Oxygen; pH; Phosphorus, total; Rodgers_Park_Lake; Sand; Saylorville_Reservoir; South_Sturgeon; Temperature, water; Thirty; Three_Mile_Lake; Water sample; WS
    Type: Dataset
    Format: text/tab-separated-values, 230 data points
    Location Call Number Limitation Availability
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  • 6
    Publication Date: 2023-06-27
    Keywords: Beaver; Beaver_Lake_Iowa; Beeds_Lake; Big_Creek_Lake; Branched glycerol dialkyl glycerol tetraether; Branched glycerol dialkyl glycerol tetraether, Ia; Branched glycerol dialkyl glycerol tetraether, Ib; Branched glycerol dialkyl glycerol tetraether, Ic; Branched glycerol dialkyl glycerol tetraether, IIa; Branched glycerol dialkyl glycerol tetraether, IIb; Branched glycerol dialkyl glycerol tetraether, IIc; Branched glycerol dialkyl glycerol tetraether, IIIa; Branched glycerol dialkyl glycerol tetraether, IIIb; Branched glycerol dialkyl glycerol tetraether, IIIc; Brush_Shanty; Coralville_Reservoir; Cyclization ratio of branched tetraethers; DEPTH, water; Event label; Hatch; Hickory_Grove; Horsehead; Kelly; Lake_MacBride; Latitude of event; Leighton; Little_Sand; Little_Split_Hand; Longitude of event; Lower_Pine_Lake; Methylation index of branched tetraethers; Meyers_Lake; NIOZ_UU; NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University; North America, U.S.A.; OLeary; Rodgers_Park_Lake; Sand; Saylorville_Reservoir; South_Sturgeon; Thirty; Three_Mile_Lake; Water sample; WS
    Type: Dataset
    Format: text/tab-separated-values, 238 data points
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  • 7
    Publication Date: 2023-06-27
    Keywords: Beaver; Beaver_Lake_Iowa; Beeds_Lake; Big_Creek_Lake; Branched glycerol dialkyl glycerol tetraether; Branched glycerol dialkyl glycerol tetraether, Ia; Branched glycerol dialkyl glycerol tetraether, Ib; Branched glycerol dialkyl glycerol tetraether, Ic; Branched glycerol dialkyl glycerol tetraether, IIa; Branched glycerol dialkyl glycerol tetraether, IIb; Branched glycerol dialkyl glycerol tetraether, IIc; Branched glycerol dialkyl glycerol tetraether, IIIa; Branched glycerol dialkyl glycerol tetraether, IIIb; Brush_Shanty; Coralville_Reservoir; Cyclization ratio of branched tetraethers; DEPTH, water; Event label; Hatch; Hickory_Grove; Horsehead; Kelly; Lake_MacBride; Latitude of event; Leighton; Little_Sand; Little_Split_Hand; Longitude of event; Lower_Pine_Lake; Methylation index of branched tetraethers; Meyers_Lake; NIOZ_UU; NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University; North America, U.S.A.; OLeary; Rodgers_Park_Lake; Sand; Saylorville_Reservoir; South_Sturgeon; Thirty; Three_Mile_Lake; Water sample; WS
    Type: Dataset
    Format: text/tab-separated-values, 210 data points
    Location Call Number Limitation Availability
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  • 8
    Publication Date: 2024-03-15
    Keywords: 19-Butanoyloxyfucoxanthin; 1-Iodoethane; 1-Iodopropane; 2-Iodopropane; Algae, biomass as carbon; Algae, fatty acids; Algae abundance; Alkaline phosphatase; Alkalinity, Gran titration (Gran, 1950); Alkalinity, total; Alloxanthin; alpha-Carotene, beta,epsilon-Carotene; Ammonium; Aphanizophyll; Aragonite saturation state; Arctic; Bacteria; Bacteria, biomass as carbon; Bacteria, fatty acids; Bacteria, high DNA fluorescence; Bacteria, low DNA fluorescence; Bacterial/community respiration, oxygen, ratio; Bacterial biomass production of carbon; Bacterial biomass production of carbon, standard deviation; Bacterial production; Bacterial production, standard deviation; beta-Carotene, beta,beta-Carotene; Bicarbonate ion; BIOACID; Biogenic silica; Biological Impacts of Ocean Acidification; Biomass/Abundance/Elemental composition; Bromochloromethane; Bromoiodomethane; Calanus finmarchicus, δ13C; Calcite saturation state; Calculated; Calculated from linear regression; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, particulate; Carbon, organic, dissolved; Carbon, organic, particulate; Carbon, total, particulate; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, flux per mesocosm; Chloroiodomethane; Chlorophyll a; Chlorophyll a, areal concentration; Chlorophyll b; Chlorophyll c1+c2; Chlorophyll c3; Chlorophytes; Cirripedia, larvae, δ13C; Coast and continental shelf; Community composition and diversity; Coulometry; Cryptophytes; Cyanobacteria, biomass per area; DATE/TIME; delta 13C labeling method; Diadinoxanthin; Diatoxanthin; Dibromochloromethane; Dibromomethane; Diiodomethane; Dimethyl sulfide, dissolved; Dimethylsulfoniopropionate; Entire community; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Exudation as determined by 14C DOC production; Exudation as determined by 14C DOC production, standard deviation; Field experiment; Flow cytometry; Fucoxanthin; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gas chromatography - Mass spectrometry (GC-MS); GC-PFPD; Gross community production of oxygen; Hand-operated CTD (Sea&Sun Technology, CTD 60M); High Performance Liquid Chromatography (HPLC); Identification; Iodomethane; Kongsfjorden-mesocosm; MESO; Mesocosm experiment; Mesocosm or benthocosm; Myxoxanthophyll; Nanoplankton; Neoxanthin; Net community production, standard deviation; Net community production of carbon dioxide; Net community production of oxygen; Nitrate; Nitrite; Nitrogen, organic, dissolved; Nitrogen, organic, particulate; Nitrous oxide; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Oxygen; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; Peridinin; pH; Phosphate; Phosphorus, organic, dissolved; Phosphorus, organic, particulate; Phytoplankton, biomass per area; Picophytoplankton; Polar; Prasinoxanthin; Primary production/Photosynthesis; Primary production of POC as determined by 14C POC production; Primary production of POC as determined by 14C POC production, standard deviation; Pulsed flame photometric detector - gas chromatography; Respiration; Respiration, oxygen, bacterial; Respiration, oxygen, bacterial, standard error; Respiration, oxygen, community; Respiration, oxygen, community, standard error; Salinity; Sample comment; Sigmas; Silicon; Svalbard; Temperature, water; Thymidine incorporation; Time, incubation; Transfer velocity, carbon dioxide; Transfer velocity, dimethyl sulfide; Transfer velocity, nitrous oxide; Tribromomethane; Turbidity (Formazin Turbidity Unit); Violaxanthin; Viral abundance; Virus/bacteria ratio; Viruses; Water content of mesocosm; Zeaxanthin; Δδ13C; δ13C, algae; δ13C, bacteria; δ13C, dissolved inorganic carbon; δ13C, dissolved organic carbon; δ13C, particulate organic carbon
    Type: Dataset
    Format: text/tab-separated-values, 35076 data points
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  • 9
    Publication Date: 2024-02-07
    Description: Sponges produce distinct fatty acids (FAs) that (potentially) can be used as chemotaxonomic and ecological biomarkers to study endosymbiont-host interactions and the functional ecology of sponges. Here, we present FA profiles of five common habitat-building deep-sea sponges (class Demospongiae, order Tetractinellida), which are classified as high microbial abundance (HMA) species. Geodia hentscheli, G. parva, G. atlantica, G. barretti, and Stelletta rhaphidiophora were collected from boreal and Arctic sponge grounds in the North-Atlantic Ocean. Bacterial FAs dominated in all five species and particularly isomeric mixtures of mid-chain branched FAs (MBFAs, 8- and 9-Me-C16:0 and 10- and 11-Me-C18:0) were found in high abundance (together ≥ 20% of total FAs) aside more common bacterial markers. In addition, the sponges produced long-chain linear, mid- and a(i)-branched unsaturated FAs (LCFAs) with a chain length of 24‒28 C atoms and had predominantly the typical Δ5,9 unsaturation, although the Δ9,19 and (yet undescribed) Δ11,21 unsaturations were also identified. G. parva and S. rhaphidiophora each produced distinct LCFAs, while G. atlantica, G. barretti, and G. hentscheli produced similar LCFAs, but in different ratios. The different bacterial precursors varied in carbon isotopic composition (δ13C), with MBFAs being more enriched compared to other bacterial (linear and a(i)-branched) FAs. We propose biosynthetic pathways for different LCFAs from their bacterial precursors, that are consistent with small isotopic differences found in LCFAs. Indeed, FA profiles of deep-sea sponges can serve as chemotaxonomic markers and support the concept that sponges acquire building blocks from their endosymbiotic bacteria.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 10
    Publication Date: 2021-10-03
    Description: Sponges produce distinct fatty acids (FAs) that (potentially) can be used as chemotaxonomic and ecological biomarkers to study endosymbiont-host interactions and the functional ecology of sponges. Here, we present FA profiles of five common habitat-building deep-sea sponges (class Demospongiae, order Tetractinellida), which are classified as high microbial abundance (HMA) species. Geodia hentscheli, G. parva, G. atlantica, G. barretti, and Stelletta rhaphidiophora were collected from boreal and Arctic sponge grounds in the North-Atlantic Ocean. Bacterial FAs dominated in all five species and particularly isomeric mixtures of mid-chain branched FAs (MBFAs, 8- and 9-Me-C16:0 and 10- and 11-Me-C18:0) were found in high abundance (together ≥ 20% of total FAs) aside more common bacterial markers. In addition, the sponges produced long-chain linear, mid- and a(i)-branched unsaturated FAs (LCFAs) with a chain length of 24‒28 C atoms and had predominantly the typical Δ5,9 unsaturation, although the Δ9,19 and (yet undescribed) Δ11,21 unsaturations were also identified. G. parva and S. rhaphidiophora each produced distinct LCFAs, while G. atlantica, G. barretti, and G. hentscheli produced similar LCFAs, but in different ratios. The different bacterial precursors varied in carbon isotopic composition (δ13C), with MBFAs being more enriched compared to other bacterial (linear and a(i)-branched) FAs. We propose biosynthetic pathways for different LCFAs from their bacterial precursors, that are consistent with small isotopic differences found in LCFAs. Indeed, FA profiles of deep-sea sponges can serve as chemotaxonomic markers and support the concept that sponges acquire building blocks from their endosymbiotic bacteria.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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