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  • 1
    Online Resource
    Online Resource
    New York, NY :Springer,
    Keywords: Life sciences. ; Electronic books.
    Description / Table of Contents: This text of numerous medically and industrially important taxa offers a revised taxonomic outline of the Firmicutes based upon the SILVA project, including a description of over 1346 species and 235 genera in the Firmicute phylum.
    Type of Medium: Online Resource
    Pages: 1 online resource (1476 pages)
    Edition: 2nd ed.
    ISBN: 9780387684895
    DDC: 579.3012
    Language: English
    Note: Bergeys_FM.pdf -- Bergeys_Ch01.pdf -- Bergeys_Ch02.pdf -- Bergeys_Ch03-5.pdf -- Bergeys_Ch06.pdf -- Bergeys_Ch07.pdf -- Bergeys_Ch08.pdf -- Bergeys_Ch09.pdf -- Bergeys_Ch10.pdf -- Bergeys_Ch11.pdf -- Bergeys_Ch12.pdf -- Bergeys_Ch13.pdf -- Bergeys_Ch14.pdf -- Bergeys_Ch15-18.pdf -- Bergeys_Ch19.pdf -- Bergeys_Ch20.pdf -- Bergeys_Ch21.pdf -- Bergeys_Ch22.pdf -- Bergeys_Ch23.pdf -- Bergeys_Ch25.pdf -- Bergeys_Ch26.pdf -- Bergeys_Ch27.pdf -- Bergeys_Ch28.pdf -- Bergeys_Ch29.pdf -- Bergeys_Ch30.pdf -- Bergeys_Ch31.pdf -- Bergeys_Ch32.pdf -- Bergeys_Ch33.pdf -- Bergeys_Ch34.pdf -- Bergeys_Ch35.pdf -- Bergeys_Ch36.pdf -- Bergeys_Ch37.pdf -- Bergeys_Ch38.pdf -- Bergeys_Ch39-41.pdf -- Bergeys_Ch42-44.pdf -- Bergeys_Ch45.pdf -- Bergeys_Ch46-47.pdf -- Bergeys_Ch48.pdf -- Bergeys_Ch49.pdf -- Bergeys_Ch50.pdf -- Bergeys_Ch51-53.pdf -- Bergeys_Ch54.pdf -- Bergeys_Appendix.pdf.
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  • 2
    Keywords: Microbiology. ; Electronic books.
    Type of Medium: Online Resource
    Pages: 1 online resource (1415 pages)
    Edition: 2nd ed.
    ISBN: 9780387292984
    DDC: 570
    Language: English
    Note: Intro -- BERGEY'S MANUAL® OFSystematic Bacteriology -- Preface to Volume Two of the Second Edition of Bergey's Manual® of Systematic Bacteriology -- Preface to the First Edition of Bergey's Manual® ofSystematic Bacteriology -- Preface to the First Edition of Bergey's Manual® of Determinative Bacteriology -- Contents -- Contributors -- Class I. Alphaproteobacteria class. nov. -- Class II. Betaproteobacteria class. nov. -- Class IV. Deltaproteobacteria class nov. -- Class V. Epsilonproteobacteria class. nov. -- Bibliography -- Index of Scientific Names of Archaea and Bacteria.
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 124 (1994), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract 16S rDNA sequence analysis was performed on the type strains of all validly described Acinetobacter species and five unnamed Acinetobacter strains. The phylogenetic analyses confirm that Acinetobacter is a coherent genus within the gamma subclass of Proteobacteria and that the species are phylogenetically well defined. A. calcoaceticus, A. lwoffii, A. johnsonii and A. haemolyticus form one cluster of closely related species, the pair A. junii and A. baumannii forms a second cluster. A. radioresistens stands phylogenetically isolated. The study reveals that three undescribed strains can be assigned to individually described species, while strains DSM 30009 and DSM 590 may represent two novel Acinetobacter species.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 123 (1994), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract 16S rDNA sequence data was obtained for 11 species of Arthrobacter and 4 species of Micrococcus and compared with that from other members of the arthrobacterial lineage within the order Actinomycetales. The intermixing of members of these two genera and the placement of Renibacterium salmoninarum within the radiation of these two genera, as previously suggested by 16S rRNA cataloguing, is confirmed. The branching pattern reveals several closely related organisms that cluster around the type species of Arthrobacter and Micrococcus; these species are considered ‘core organisms’. A few species, however, branch outside the radiation of core organisms; these include Micrococcus kristinae, Micrococcus halophilus, and, as previously indicated, Micrococcus sedentarius and M. nishinomiyaensis. As phenotypic data that would support the exclusion of these four species from the genus Micrococcus are still lacking taxonomic conclusions should await more thorough comparative studies.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 108 (1993), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract The primary structure of the 16S rDNA of Acidothermus cellulolyticus, a cellulolytic, asporogenous rod isolated from a hot spring, was determined by automated sequence analysis. This Gram-variable organism is not related to members of other aerobic thermophilic genera found in similar environments, such as Thermus and Thermomicrobium, but clusters within the phylogenetically defined radiation of the actinomycetes where it represents an individual subline of descent.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 115 (1994), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract Sixteen thermophilic strains of the genus Bacillus, representing eight validly described and six invalidly described species, as well as one unassigned strain, were investigated by comparative 16S rDNA analyses and the sequences compared to the existing database for the genera Bacillus and Alicyclobacillus. The majority of strains were found to cluster in two groups represented by B. stearothermophilus and B. pallidus. Bacillus smithii, B. thermocloacae, and B. thermoruber are phylogenetically well separated and cluster within the radiation of mesophilic bacilli. The as yet undescribed taxon ‘B. flavothermus’ warrants species status. B. schlegelii and B. tusciae group peripherally with members of Alicyclobacillus and may be reclassified when more phenotypic data support their phylogenetic position.
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Two isolates, belonging to a new species of a novel genus of the Phylum “Deinococcus/Thermus”, were recovered from hot spring runoffs on the Island of São Miguel in the Azores. Strains RQ-24T and TU-8 are the first cultured representatives of a distinct phylogenetic lineage within this phylum. These strains form orange/red colonies, spherical-shaped cells, have an optimum growth temperature of about 50°C, an optimum pH for growth between about 7.5 and 9.5, and do not grow at pH below 6.5 or above pH 11.2. These organisms grow in complex media without added NaCl, but have a maximum growth rate in media with 1.0% NaCl and grow in media containing up to 6.0% NaCl. The organisms are extremely ionizing radiation resistant; 60% of the cells survive 5.0 kGy. These strains are chemoorganotrophic and aerobic; do not grow in Thermus medium under anaerobic conditions with or without nitrate as electron acceptor and glucose as a source of carbon and energy, but ferment glucose to d-lactate without formation of gas. The organisms assimilate a large variety of sugars, organic acids and amino acids. Fatty acids are predominantly iso- and anteiso-branched; long chain 1,2 diols were also found in low relative proportions; menaquinone 8 (MK-8) is the primary respiratory quinone. Peptidoglycan was not detected. Based on 16S rRNA gene sequence analysis, physiological, biochemical and chemical analysis we describe a new species of one novel genus represented by strain RQ-24T (CIP 108686T= LMG 22925T= DSM 17093T) for which we propose the name Truepera radiovictrix. We also propose the family Trueperaceae fam. nov. to accommodate this new genus.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1572-8773
    Keywords: degradation ; ferrioxamines ; siderophores
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract A novel Gram-negative Spirillum-like bacterium (ASP-1) was isolated from lake water by enrichment culture on desferrioxamine B as sole source of carbon and energy. ASP-1 was able to degrade the siderophores desferrioxamine B and E. The property of siderophore degradation was inducible in the presence of desferrioxamine B. The ferric complexes, however, were not measurably degraded but served as an iron source. Degradation of desferrioxamines in culture was followed by measuring the residual ferrioxamines colorimetrically at 430 nm after addition of iron. Degradation in cell-free assays was followed quantitatively by HPLC on a reversed-phase column measuring the time-dependent disappearance of the desferrioxamines B and E. Cell-free assays also revealed that degradation of the cyclic desferrioxamine E was rapid and complete, whereas degradation of the linear desferrioxamine B yielded two intermediate iron-binding metabolites of shorter chain length. Preparative isolation by HPLC and mass spectrometric analysis of the metabolites revealed masses at 361 and 419 a.m.u., respectively, suggesting a splitting at the two amide bonds. ASP-1 is a nitrogen fixing Spirillum bacterium which could also use ammonium and glucose or several organic acids as a carbon source but grew poorly with amino acids. Physiological comparisons with Aquaspirillum and Azospirillum failed to assign ASP-1 to any of the presently known Spirillum species. Based on 16S rDNA sequence analysis the strain could be placed within the radiation of the Azospirillum/Rhodocista group. The closest relative was Azospirillum irakense, showing 98.8% similarity.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Extremophiles 2 (1998), S. 347-357 
    ISSN: 1433-4909
    Keywords: Key words Thermophile ; Bacillus ; Nitrile hydratase ; Thermostable
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A novel, nitrile-degrading, thermophilic microorganism belonging to the genus Bacillus and most closely related to strain DSM 2349 has been isolated. The strain grew optimally at 65°C with the constitutive expression of a thermostable intracellular nitrile hydratase. No aromatic-specific "benzonitrilase" activity was detected under any conditions. The enzyme, an α2β2 heterotetramer with a native molecular weight of 110 kDa, was purified to homogeneity. N-terminal sequence data showed no homology to known bacterial α subunit sequences but had a high level of identity with other bacterial N-terminal β subunit sequences. The purified enzyme had a broad pH-activity range (50% activity limits were pH 5.1 and 8.7) and was stable in aqueous solution up to 60°C in the absence of either substrates or substrate analogues. Substrate specificity was restricted to aliphatic nitriles, but an unusual preference for branched and cyclic aliphatic nitriles was noted. Turnover rates under optimum reaction conditions were 746 and 4580 sec−1 for acetonitrile and valeronitrile, respectively.
    Type of Medium: Electronic Resource
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  • 10
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Enrichment of hydrocarbon-oxidizing sulphate-reducing bac-teria on crude oil was attempted in strictly anoxic artificial medium with the same concentration of sulphate (28 mM), chloride, sodium, potassium, magnesium and calcium ions as natural sea water9. Inocula were from Guaymas ...
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