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  • 1
    Keywords: Helicobacter pylori. ; Electronic books.
    Type of Medium: Online Resource
    Pages: 1 online resource (209 pages)
    Edition: 1st ed.
    ISBN: 9780323395663
    Series Statement: The Clinics: Internal Medicine Series ; v.Volume 44-3
    DDC: 616.33014
    Language: English
    Note: Front Cover -- Managementof Helicobacterpylori-Related Diseases -- Copyright -- Contributors -- CONSULTING EDITOR -- EDITORS -- AUTHORS -- Contents -- Foreword: Helicobacter pylori -- Preface: Helicobacter pylori: New Thoughts and Practices -- Diagnosis of Helicobacter pylori Infection in the Proton Pump Inhibitor Era -- Practical Aspects in Choosing a Helicobacter pylori Therapy -- How to Effectively Use Bismuth Quadruple Therapy: The Good, the Bad, and the Ugly -- Is There a Role for Probiotics in Helicobacter pylori Therapy? -- Molecular Approaches to Identify Helicobacter pylori Antimicrobial Resistance -- When Is Endoscopic Follow-up Appropriate After Helicobacter pylori Eradication Therapy? -- Gastric Cancer Risk in Patients with Helicobacter pylori Infection and Following Its Eradication -- Molecular Pathogenesis of Helicobacter pylori-Related Gastric Cancer -- Helicobacter pylori Eradication to Eliminate Gastric Cancer: The Japanese Strategy -- Treatment Strategy for Gastric Mucosa-Associated Lymphoid Tissue Lymphoma -- Rationale for a Helicobacter pylori Test and Treatment Strategy in Gastroesophageal Reflux Disease -- Screening to Identify and Eradicate Helicobacter pylori Infection in Teenagers in Japan -- Current Status and Prospects for a Helicobacter pylori Vaccine -- GASTROENTEROLOGY CLINICS OF NORTH AMERICA -- FORTHCOMING ISSUES -- December 2015 -- March 2016 -- June 2016 -- RECENT ISSUES -- June 2015 -- March 2015 -- December 2014 -- Helicobacter pylori -- Helicobacter pylori: New Thoughts and Practices -- Diagnosis of Helicobacter pylori Infection in the Proton Pump Inhibitor Era -- Key points -- INTRODUCTION -- INVASIVE TESTS -- Histology -- Culture -- Rapid urease test -- Molecular tests -- Noninvasive Tests -- Urea breath test -- Stool antigen tests -- SEROLOGY. , SUMMARY: DIAGNOSIS OF HELICOBACTER PYLORI INFECTION IN THE PROTON PUMP INHIBITORS ERA -- ACKNOWLEDGMENTS -- REFERENCES -- Practical Aspects in Choosing a Helicobacter pylori Therapy -- Key points -- INTRODUCTION -- Why Is Helicobacter pylori Difficult to Treat? -- CHOICE OF THERAPY -- FIRST-LINE REGIMENS -- Nonbismuth Quadruple Therapies -- Sequential therapy -- Concomitant therapy -- Hybrid (sequential-concomitant) therapy -- Bismuth Quadruple Therapy -- RESCUE THERAPY -- Fluoroquinolone-Containing Therapy -- Bismuth Quadruple Therapy, Including Furazolidone-Containing Regimens -- Rifabutin-Containing Therapy -- PROBIOTICS -- SUMMARY -- REFERENCES -- How to Effectively Use Bismuth Quadruple Therapy -- Key points -- BACKGROUND -- BISMUTH IN THE ERA OF NEW CONCEPTS REGARDING PATHOGENESIS AND TREATMENT OF PEPTIC ULCER -- BISMUTH QUADRUPLE THERAPY FOR H PYLORI ERADICATION -- THE EFFECT OF METRONIDAZOLE RESISTANCE AS EXAMINED BY META-ANALYSIS -- CALCULATION OF THE EFFECTIVENESS OF BISMUTH QUADRUPLE THERAPY -- ADHERENCE (COMPLIANCE) WITH BISMUTH QUADRUPLE THERAPY -- Adherence to the Protocol -- HOW TO MAKE BISMUTH QUADRUPLE THERAPY MORE ACCEPTABLE -- DOXYCYCLINE -- EXAMINATION OF OUTCOME IN REGIONS WHERE BISMUTH QUADRUPLE THERAPY FREQUENTLY FAILS (EG, TURKEY AND IRAN) -- BISMUTH, TETRACYCLINE, AMOXICILLIN, PROTON PUMP INHIBITORS QUADRUPLE THERAPY -- BISMUTH SEQUENTIAL THERAPIES -- INFORMATION NEEDED TO OBTAIN GENERALIZABLE RESULTS -- ISSUES RIPE FOR SYSTEMATIC STUDY -- Relation of Drug Administration and Meals -- Reduction of Side Effects with Bismuth Quadruple Therapy -- PROTON PUMP INHIBITORS DOSAGE -- EFFICIENT STUDY DESIGN -- RECOMMENDATIONS -- REFERENCES -- Is There a Role for Probiotics in Helicobacter pylori Therapy? -- Key points -- WHAT PROBIOTICS ARE -- PROBIOTICS -- Use of Probiotics Clinically. , PROBIOTICS AS ADJUVANT THERAPY FOR HELICOBACTER PYLORI ERADICATION -- PROBIOTICS AS CURE FOR HELICOBACTER PYLORI INFECTION -- SUMMARY -- REFERENCES -- Molecular Approaches to Identify Helicobacter pylori Antimicrobial Resistance -- Key points -- MOLECULAR DETERMINATION OF HELICOBACTER PYLORI RESISTANCE TO MACROLIDES -- Mechanisms -- Methods -- Real-time polymerase chain reaction for detection of Helicobacter pylori resistance to macrolides -- Principle -- Advantages of this procedure -- Variants of the method -- The TaqMan format -- Advantages and limitations -- The scorpion format -- Multiplex polymerase chain reaction followed by strip hybridization -- Advantages and limits -- Dual priming oligonucleotide-polymerase chain reaction -- Other polymerase chain reaction-based assays -- Nested polymerase chain reaction followed by sequencing or standard polymerase chain reaction followed by sequencing or res ... -- Allele-specific primer polymerase chain reaction -- Primer mismatch polymerase chain reaction -- Invader assay for single nucleotide polymorphism genotyping -- Non-polymerase chain reaction-based assays -- Fluorescence in situ hybridization -- Advantages -- Peptide nucleic acid-fluorescence in situ hybridization -- Other methods -- Correlation with Clinical Outcome -- MOLECULAR DETERMINATION OF HELICOBACTER PYLORI RESISTANCE TO FLUOROQUINOLONES -- Mechanisms -- Methods -- Real-time polymerase chain reaction -- Multiplex polymerase chain reaction followed by strip hybridization -- Other polymerase chain reaction-based assays -- Sequencing of the gyrA quinolone resistance-determining region -- Allele-specific polymerase chain reaction -- Correlation with Clinical Outcome -- MOLECULAR DETERMINATION OF HELICOBACTER PYLORI RESISTANCE TO TETRACYCLINE -- Mechanisms -- Methods -- Real-time polymerase chain reaction. , Standard polymerase chain reaction followed by sequencing or polymerase chain reaction-restriction length polymorphism -- MOLECULAR DETERMINATION OF HELICOBACTER PYLORI RESISTANCE TO OTHER ANTIBIOTICS -- Rifampins -- Amoxicillin -- 5-Nitroimidazoles -- REFERENCES -- When Is Endoscopic Follow-up Appropriate After Helicobacter pylori Eradication Therapy? -- Key points -- INTRODUCTION -- HELICOBACTER PYLORI ERADICATION -- UNINVESTIGATED AND NONULCER DYSPEPSIA -- PEPTIC ULCER -- PREMALIGNANT GASTRIC LESIONS AND EARLY GASTRIC CANCER -- HEREDITARY RISK FOR GASTRIC CANCER -- MUCOSA-ASSOCIATED LYMPHOID TISSUE LYMPHOMA -- SUMMARY -- REFERENCES -- Gastric Cancer Risk in Patients with Helicobacter pylori Infection and Following Its Eradication -- Key points -- INTRODUCTION -- HELICOBACTER PYLORI INFECTION IS THE MOST IMPORTANT DETERMINANT OF GASTRIC CANCER RISK -- GASTRIC CANCER RISK: EPIDEMIOLOGIC TRENDS -- GASTRIC CANCER RISK: THE ASSESSMENT -- Demographics -- Noninvasive Methods -- Invasive Methods -- Endoscopy and biopsy protocols -- Histology -- GASTRIC CANCER RISK IN ERADICATED PATIENTS -- Helicobacter pylori Eradication as a Primary Prevention of Gastric Cancer -- How to Assess/Quantify Cancer Risk After Helicobacter pylori Eradication -- SUMMARY -- REFERENCES -- Molecular Pathogenesis of Helicobacter pylori-Related Gastric Cancer -- Key points -- INTRODUCTION -- CLASSIFICATIONS AND CHARACTERIZATIONS OF GASTRIC CANCER -- HELICOBACTER PYLORI VIRULENCE FACTORS ON GASTRIC EPITHELIUM DURING GASTRIC CARCINOGENESIS -- Roles of CagA in Gastric Carcinogenesis -- Roles of Vacuolating Cytotoxin A in Gastric Carcinogenesis -- Role of Peptidoglycan in Gastric Carcinogenesis -- HELICOBACTER PYLORI-INDUCED INFLAMMATORY RESPONSES DURING GASTRIC CARCINOGENESIS -- GENETIC AND EPIGENETIC ALTERATIONS DURING GASTRIC CARCINOGENESIS. , Mechanisms of Induction of Genetic Alterations -- Deamination -- Oxidative stress -- Chromosomal instability -- Mechanisms of Induction of Epigenetic Alterations -- Mechanisms of Induction of microRNA Alterations -- SUMMARY -- REFERENCES -- Helicobacter pylori Eradication to Eliminate Gastric Cancer -- Key points -- INTRODUCTION -- PREVIOUS PREVENTIVE MEASURES FOR GASTRIC CANCER IN JAPAN -- CURRENT STATUS AND CHARACTERISTICS OF SCREENING FOR GASTRIC CANCER IN JAPAN -- THE EFFECT OF HELICOBACTER PYLORI ERADICATION FOR GASTRIC CANCER PREVENTION -- HEALTH INSURANCE COVERAGE FOR HELICOBACTER PYLORI ERADICATION THERAPY IN JAPAN -- STRATEGY FOR THE ELIMINATION OF GASTRIC CANCER IN JAPAN -- REFERENCES -- Treatment Strategy for Gastric Mucosa-Associated Lymphoid Tissue Lymphoma -- Key points -- INTRODUCTION -- PATHOGENESIS -- Helicobacter pylori -- Genetic Aberrations -- DIAGNOSIS -- Histopathology -- Endoscopic Findings -- Clinical Staging -- TREATMENTS -- Helicobacter pylori Eradication -- Strategies for Patients not Responding to Helicobacter pylori Eradication -- SUMMARY/DISCUSSION -- REFERENCES -- Rationale for a Helicobacter pylori Test and Treatment Strategy in Gastroesophageal Reflux Disease -- Key points -- INTRODUCTION -- THE EFFECT OF PROTON PUMP INHIBITOR TREATMENT ON CHRONIC HELICOBACTER PYLORI-RELATED GASTRITIS -- THE EFFECT OF HELICOBACTER PYLORI ERADICATION ON CHRONIC GASTRITIS AND ATROPHY RELATED TO HELICOBACTER PYLORI INFECTION -- GASTRITIS AND ADENOCARCINOMA IN MONGOLIAN GERBILS -- A CONTROLLED TRIAL OF PROTON PUMP INHIBITOR THERAPY IN INFECTED SUBJECTS WITH GASTROESOPHAGEAL REFLUX DISEASE -- THE CASE AGAINST HELICOBACTER PYLORI ERADICATION THERAPY IN GASTROESOPHAGEAL REFLUX DISEASE -- COST-EFFECTIVENESS ANALYSIS -- SUMMARY -- REFERENCES -- Screening to Identify and Eradicate Helicobacter pylori Infection in Teenagers in Japan. , Key points.
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  • 2
    Online Resource
    Online Resource
    New York, NY :Springer,
    Keywords: Medical virology. ; Electronic books.
    Type of Medium: Online Resource
    Pages: 1 online resource (117 pages)
    Edition: 1st ed.
    ISBN: 9781493965427
    DDC: 616.97/9201
    Language: English
    Note: Intro -- Dedication -- Preface -- Contents -- Contributors -- Part 1: Rebranding Classical Protein Chemistry: Proteomics of the Past -- Chapter 1: Introduction: HIV-1 Proteomics, Why Should One Care? -- References -- Chapter 2: HIV-1 Biology at the Protein Level -- The Benefits of HIV-1 Protein Study -- Evolution of Retroviral Biochemistry -- HIV-1 Virus Genome and Its Proteins: Basics -- Viral Proteins in HIV-1 Virions -- HIV-1 Assembly: Why Gag Polyproteins? -- The HIV-1 Proteins -- Gag (http://www.uniprot.org/uniprot/P12493) -- MA, Matrix, p17MA -- CA, Capsid, or p24CA -- SP1, Spacer Protein 1, p2Gag -- Nucleocapsid, NC, p7NC -- p6Gag -- GagPol (http://www.uniprot.org/uniprot/P12497) -- p6Pol, Preprotease, Transframe Protein -- PR, Protease -- RT, Reverse Transcriptase -- IN, Integrase -- Env (http://www.uniprot.org/uniprot/P03377) -- Accessory Proteins -- Vpr (http://www.uniprot.org/uniprot/P12520) -- Nef (http://www.uniprot.org/uniprot/P03406) -- Regulatory Proteins -- Incorporation of Cellular Proteins into HIV-1: Bystanders, Partners, Captives, and Assassins -- The Purity Problem -- HIV-1 Proteome Summary -- References -- Chapter 3: 25 Years of HIV-1 Biochemistry -- Aspects of HIV-1 Particle Biochemistry -- HIV-1 Proteomics Before There Was Proteomics -- Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis -- Immunoblotting/Western Blotting -- Reversed-Phase High-Pressure Chromatography -- Automated N-Terminal (Edman Degradation) Protein Sequencing -- Amino Acid Analysis -- References -- Part 2: Modern HIV-1 Proteomics -- Chapter 4: Proteomic Studies of HIV-1 -- Introduction -- Proteomic Studies of HIV-1 -- Proteomics: "A Three-Legged Stool" -- Sample Preparation -- Protein and Peptide Quantitation -- Sample Cleanup: Beware of Traditional Detergents -- Mass Spectrometry: The Basics -- Vacuum System and Source -- The Mass Analyzer. , The Detector -- Tandem Mass Spectrometry -- Mass Spectrometry in the Context of HIV-1 Proteomics -- Chromatography Considerations -- Mass Spectrometry Acquisition: Qualitative Versus Quantitative Methods -- Data-Dependent Analysis -- Label-Free Quantitative Approaches: Spectral Counting and Data-­Independent Analysis -- Labeling Approaches -- Isobaric Tagging -- Stably Incorporated Labeled Amino Acids -- Informatics -- Targeted HIV-1 Proteomics and the Path to Clinical Applications -- Selective Reaction Monitoring -- Quick Start Guide for SRM -- Thinking Back to Our Experiments and Motivations -- Alternative Approaches -- Affinity Pulldown Approaches -- Antigen Presentation -- Protein Arrays -- Conclusions -- References -- Chapter 5: HIV-1 Sequencing -- Introduction -- Reasons Why Understanding HIV/SIV Variation Is Important from a Biological and Proteomics Perspective -- The Evolution of HIV/SIV Sequencing Technologies -- HIV/SIV Deep Sequencing Methodologies -- Pre-experimental Questions -- Sequencing Methodology -- Sequence Analysis -- Trimming, Merging, and Mapping FASTQ Reads -- Quantify the Frequency of Individual SNPs Across the Virus Genome -- Quantify the Frequency of Linked Segments -- De Novo Assembly -- Discussion and Final Thoughts -- References -- Chapter 6: Proteomic Studies of HIV-1 and Its Posttranslational Modifications -- Introduction: Posttranslational Modifications Important to HIV-1 -- The Increasing Recognition of the Role of Posttranslational Modifications in HIV-1 Proteins -- Posttranslational Modifications of Host Proteins -- Detailed Description of PTMs Involved in the HIV-1 Life Cycle -- Phosphorylation -- N-Linked Glycosylation -- Palmitoylation and Myristoylation (Fatty Acid Acylation) -- Ubiquitination/Ubiquitylation -- Advantages and Challenges of Studying PTMs -- Proteomic Methods for PTM Analysis. , Biochemical Methods -- Difference Gel Electrophoresis and 2D Electrophoresis -- Mass Spectrometry of PTMs -- Advanced MS Techniques -- Emerging Technologies -- Click Chemistry -- Non-proteomic Mass Spectrometry -- Mass Spectrometry Imaging -- Summary -- References -- Chapter 7: Bioinformatics for Mass Spectrometry-Based Proteomics -- Introduction -- Fundamentals of Peptide MS Data -- Fundamentals of the Proteomic Workflow -- Extracting Annotated and Predicted Biology -- The Future of HIV Proteomics -- References.
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  • 3
    Online Resource
    Online Resource
    Oxford :Taylor & Francis Group,
    Keywords: Great Britain. ; Electronic books.
    Description / Table of Contents: This new key textbook for introductory courses in human geography provides first and second-year undergraduates with a comprehensive thematic approach to the changing human geography of the UK.
    Type of Medium: Online Resource
    Pages: 1 online resource (305 pages)
    Edition: 1st ed.
    ISBN: 9780203452943
    DDC: 941.086
    Language: English
    Note: Intro -- Human Geography of the UK -- Copyright -- Contents -- List of Figures -- List of Tables -- List of Boxes -- Acknowledgements -- Abbreviations -- Part One The Human Geography of The UK: Some Issues -- 1 Approaches to The Human Geography of The UK -- 1.1 Introduction -- 1.2 The Human Geography of The UK: Some Problems -- 1.3 Approaches to The Human Geography of The UK -- 2 The UK in a Global Context -- 2.1 Introduction -- 2.2 The Rise and Fall of The UK -- 2.3 European Integration and UK Responses -- 2.4 Globalisation and The UK -- 2.5 Summary -- 3 Processes of Socioeconomic Change -- 3.1 Introduction -- 3.2 The Processes of Economic Change -- 3.3 Dimensions of Social Change -- 3.3.1 Class -- 3.3.2 Gender and Sexuality -- 3.3.3 'Race' and Ethnicity -- 3.4 Summary -- 4 An Era of Exclusion: Polarisation and Division -- 4.1 Introduction -- 4.2 Recent Debates on Division -- 4.3 Summary -- 5 Cultural Change -- 5.1 Introduction -- 5.2 Post-war Cultural Change -- 5.3 Ethnic Identities and Cultures -- 5.4 Summary -- 6 Political Change -- 6.1 Introduction -- 6.2 Constitutional Change -- 6.3 Political Change -- 6.4 Devolution: The End of The UK? -- 6.5 Political Ideologies, Pressure Groups and Identity Politics -- 6.6 Summary -- Part Two The UK in a Period of Change -- 7 The UK Population -- 7.1 Introduction -- 7.2 Population Distribution -- 7.3 Population Change -- 7.3.1 Fertility -- 7.3.2 Mortality -- 7.3.3 Migration -- 7.4 Population Issues -- 7.4.1 Extra-Marital Fertility -- 7.4.2 Ageing Population -- 7.4.3 Household and Family Change -- 7.4.4 Immigration -- 7.4.5 Ethnic Minorities -- 7.5 Summary -- Revision Questions -- Key Texts -- 8 Work -- 8.1 Introduction -- 8.2 The Changing World of Work -- 8.2.1 What is Work? -- 8.2.2 Unemployment -- 8.3 Sectors of the Economy -- 8.3.1 Deindustrialisation and The Decline in Male Employment. , 8.3.2 Case Studies of Deindustrialisation -- 8.3.3 The Rise of the Service Sector -- 8.3.4 Agriculture -- 8.4 Demography and Social Change -- 8.4.1 Young Adults and Work -- 8.4.2 Feminisation of the Labour Market -- 8.4.3 An Ageing Ppopulation -- 8.5 Work Practices -- 8.5.1 Flexible Work -- 8.5.2 Self-Employment -- 8.5.3 Homeworking -- 8.5.4 Unpaid Work -- 8.5.5 Workaholism and Stress -- 8.6 Summary -- 8.6.1 Case study: 'Workaholic Britain' -- Revision Questions -- Key Texts -- 9 Consumption and Leisure -- 9.1 Introduction -- 9.2 Leisure and Consumption in The UK Today -- 9.2.1 The Development of The Consuming Lifestyle -- 9.2.2 Changes in Leisure and Consumption Patterns -- 9.2.3 Consuming Lifestyles in The UK -- 9.3 New Landscapes of Consumption -- 9.3.1 Case Study: Nottingham's Lace Market -- 9.4 Summary -- Revision Questions -- Key Texts -- 10 Health and Well-being -- 10.1 Introduction -- 10.2 Mortality -- 10.3 The Geography of Health and Well-being: Some Causal Factors -- 10.3.1 Environmental Factors -- 10.3.2 Behaviour and Lifestyle -- 10.4 Health Inequalities -- 10.4.1 Age -- 10.4.2 Gender -- 10.4.3 Social Class -- 10.4.4 Ethnicity -- 10.5 Health care Provision -- 10.6 Summary -- Revision Questions -- Key Texts -- 11 Culture and Identity -- 11.1 Introduction -- 11.2 Understanding Culture and Identity -- 11.3 Challenges to Culture and Identity: Whither England? -- 11.4 Fabricators and Symbols of Culture and Identity -- 11.4.1 Place -- 11.4.2 Education -- 1.4.3 Language -- 11.4.4 Media -- 11.4.5 Religion -- 11.4.6 Sport -- 11.4.7 Dress -- 11.4.8 Music -- 11.4.9 Food and Drink -- 11.5 Gendered Culture and Identity -- 11.6 Summary -- Revision Questions -- Key Texts -- 12 Policy Responses -- 12.1 Introduction -- 12.2 Rural and Urban Issues -- 12.3 Transport and Sustainability Debates -- 12.4 Regional Governance and The English Regions. , 12.5 The New Deal for Welfare to Work: From Full Employment to Full Employability -- 12.6 The UK Regions and EU Economic Development Policies -- 12.7 Summary -- Revision Questions -- Key Texts -- Part Three The UK: A Society and State Divided? -- 13 Constitutional and Political Change -- 13.1 Introduction -- 13.2 Devolution -- 13.2.1 Ireland-Northern Ireland -- 13.2.2 Scotland -- 13.2.3 Wales -- 13.2.4 England? -- 13.3 Regionalism -- 13.3.1 London -- 13.3.2 North East -- 13.3.3 Yorkshire and Humber -- 13.4 Other Constitutional Reform -- 13.4.1 The Monarchy -- 13.4.2 The House of Lords -- 13.4.3 Voting Reform -- 13.5 National Government and Politics: 'New' Labour, New Political Geography? -- 13.6 Local Government and Politics -- 13.7 Europe -- 13.8 Summary -- Revision Questions -- Key Texts -- 14 Geographical Divisions: A Tale of Two Regions -- 14.1 Introduction -- 14.2 Regions in the UK -- 14.3 A tale of two regions: the North East and South East -- 14.3.1 The People -- 14.3.2 Work -- 14.3.3 Housing -- 14.3.4 Lifestyle -- 14.3.5 Health -- 14.4 Intra-Regional Variation -- 14.5 Summary -- Revision Questions -- Key Texts -- 15 The Haves and the Have-Nots -- 15.1 Introduction -- 15.2 The UK: The Emergence of two Nations? -- 15.2.1 Social Polarisation in The UK -- 15.2.2 The Haves -- 15.2.3 The Have-nots -- 15.3 Dimensions of Polarisation -- 15.3.1 Case Studies of Polarisation -- 15.4 Summary -- Revision Questions -- Key Texts -- 16 The Geography of Polarisation and Division -- 16.1 Introduction -- 16.1.1 Case Study: Divided Britain -- 16.2 The Forces of Polarisation in Urban and Rural Parts of The UK -- 16.3 The Impacts of Urban and Rural Change -- 16.3.1 Rust Belts, Urban Decline and Crime -- 16.3.2 Case Study: St Ann's, Nottingham-the 1960s Situation -- 16.3.3 Case Study: The Park Estate. , 16.3.4 Religious Division, Segregation and Exclusion in Northern Ireland -- 16.3.5 Gentrification and The Inner City -- 16.3.6 In Search of The Rural Idyll, NIMBYism and Green Belts -- 16.3.7 The 'other' Rural -- 16.4 Summary -- Revision Questions -- Key Texts -- Glossary -- Bibliography -- Index.
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  • 4
    Online Resource
    Online Resource
    Newark :American Geophysical Union,
    Keywords: Biodiversity -- Galapagos Islands. ; Electronic books.
    Type of Medium: Online Resource
    Pages: 1 online resource (446 pages)
    Edition: 1st ed.
    ISBN: 9781118852569
    Series Statement: Geophysical Monograph Series ; v.204
    Language: English
    Note: Intro -- Geophysical Monograph Series -- Copyright -- Contents -- Contributors -- Foreword: Darwin's Perspective -- Foreword: The Galápagos as a Natural Laboratory -- References -- Acknowledgments -- Chapter 1 Introduction -- Chapter 2 Contrasting Volcanism in Hawai'i and the Galápagos -- 2.1. Introduction -- 2.2. Magma Supply -- 2.2.1. Competition for magma supply and interactions between volcanoes -- 2.2.2. Archipelago-scale magma supply -- 2.3. Magma Storage -- 2.3.1. Characteristics of magma storage -- 2.3.2. Magma storage beneath volcanic flanks -- 2.4. Volcano Morphology and Structure -- 2.4.1. Volcano shape -- 2.4.2. Pattern of eruptive fissures -- 2.4.3. Calderas -- 2.4.4. Intracaldera faulting -- 2.4.5. Flank instability -- 2.5. Volcanic Eruptions and Volcano Evolution -- 2.5.1. Eruption style -- 2.5.2. Volcano evolution -- 2.6. Conclusions -- 2.7. Acknowledgments -- References -- Chapter 3 Galápagos and Easter: A Tale of Two Hotspots -- 3.1. Introduction -- 3.2. The Galápagos Islands -- 3.3. Easter-Salas y Gómez Seamount Chain -- 3.4. Discussion -- 3.4.1. Plumes at the edges of the LLSVP -- 3.4.2. Plume-Ridge Interaction Effects -- 3.4.3. Orientation of the chemical boundary -- 3.4.4. Geochemical heterogeneity of the Pacific LLSVP -- 3.5. Conclusions -- 3.6. Acknowledgments -- 3.7. Author Contributions -- References -- Chapter 4 Eruption Rates for Fernandina Volcano: A New Chronology at the Galápagos Hotspot Center -- 4.1. Introduction -- 4.2. Sampling and Analytical Details -- 4.3. Constraints on Flow Mapping -- 4.4. Eruption Rate Estimate from Young Flows -- 4.5. Age of Oldest Lava Flows -- 4.6. Magmatic/Mantle Helium and Galápagos Geographic Variability -- 4.7. Conclusions -- 4.8. Acknowledgments -- References -- Chapter 5 Galápagos Magma Chambers -- 5.1. Introduction -- 5.2. Evidence from Volcanic History and Geomorphology. , 5.3. Evidence from Deformation and Gravity -- 5.4. Evidence from Magma Compositions and Crystals -- 5.5. Petrologic Monitoring of Eruptions -- 5.6. Summary of Interpretations -- 5.7. An Evolutionary Model for Mushy Magma Chambers -- 5.8. Conclusions: the Dynamic and Thermal Evolution of Galápagos Magma Chambers -- 5.9. Acknowledgments -- References -- Chapter 6 The Geology and Geochemistry of Isla Floreana, Galápagos: A Different Type of Late-Stage Ocean Island Volcanism -- 6.1. Introduction -- 6.2. Geologic Background -- 6.3. Methods -- 6.4. Results -- 6.4.1. Geologic development of Floreana -- 6.4.2. Petrography of Floreana lavas -- 6.4.3. Mineral compositions -- 6.4.4. Major element compositions -- 6.4.5. Trace element compositions -- 6.4.6. Strontium, Neodymium, and Lead isotopic ratios -- 6.4.7. Age determinations -- 6.5. Discussion -- 6.5.1. Geologic development of Floreana -- 6.5.2. Petrogenetic model -- 6.5.3. The trace element composition of the Floreana ("FLO") component -- 6.5.4. Late-stage volcanism in Galápagos -- 6.6. Conclusions -- 6.7. Acknowledgments -- References -- Chapter 7 Plate Tectonics, Evolution, and the Survival of Species: A Modern Day Hotspot -- 7.1. Introduction -- 7.2. Tectonic Setting -- 7.2.1. General description -- 7.2.2. Age of Galápagos Islands and geographical relationship to plate motions -- 7.3. Fauna and Flora, and East-West Colonization -- 7.3.1. General description of life on oceanic islands -- 7.3.2. Life on Galápagos: ancient dating -- 7.3.3. Why east-to-west colonization? -- 7.4. Conclusion of Plate Motions Linked to Biodiversity Movements -- 7.4.1. New islands and the saving of native and endemic species -- 7.5. Volcanism Versus Introduced Species in the Survival of Species -- 7.6. Case Study of Fernandina: Haven or Hell? -- 7.6.1. General description. , 7.6.2. Conclusion of Fernandina as a Refuge of Galápagos Biodiversity -- 7.7. Biodiversity, Introduced Species, and Plate Tectonics -- 7.7.1. Contamination through introduced species -- 7.8. Fate of Biodiversity -- 7.9. Conclusions -- 7.10. Acknowledgments -- References -- Chapter 8 A Paleogeographic Model of the Galápagos Islands and Biogeographical and Evolutionary Implications -- 8.1. Introduction -- 8.2. Ages of Island Emergence -- 8.2.1. Plate tectonic estimates -- 8.2.2. Direct age measurements of lavas -- 8.2.3. New age determinations -- 8.3. Biological Implications of the Islands' Ages -- 8.3.1. General models of island biogeography -- 8.3.2. Testing the general dynamic model -- 8.3.3. Modifications to the general dynamic model -- 8.4. Movement and Subsidence of the Galápagos Islands -- 8.4.1. Subsidence model -- 8.4.2. Paleogeography of the pleistocene Galápagos -- 8.5. The Proto-Galápagos and Evolutionary Geographic Pathways -- 8.5.1. Implications for phylogenetic divergence -- 8.5.2. Comparison with phylogenetic estimates -- 8.5.3. The progression rule -- 8.5.4. Dispersal and vicariance -- 8.6. Conclusions -- 8.7. Appendix I: Emergence Ages of the Individual Galápagos Islands -- 8.7.1. Isla Fernandina -- 8.7.2. Isla Isabela -- 8.7.3. Isla Santiago -- 8.7.4. Isla Pinzón -- 8.7.5. Isla Rabida -- 8.7.6. Isla Santa Cruz -- 8.7.7. Isla Floreana -- 8.7.8. Isla Santa Fe -- 8.7.9. Isla San Cristóbal -- 8.7.10. Isla Española -- 8.7.11. Islas Genovesa, Pinta, and Marchena -- 8.7.12. Islas Wolf and Darwin -- 8.8. Acknowledgments -- References -- Chapter 9 Hydrogeology of the Galápagos Archipelago: An Integrated and Comparative Approach Between Islands -- 9.1. Introduction -- 9.2. Constraints of Basaltic Islands and Advocated Methodology -- 9.3. Main Features of San Cristóbal and Santa Cruz Islands and their Significance for Water Resources. , 9.3.1. Geology and weathering processes -- 9.3.2. Climate and water budget -- 9.3.3. Geomorphology and surface hydrology -- 9.3.4. Groundwater -- 9.4. Discussion -- 9.5. Recommendations for Groundwater Management Practices in the Galápagos -- 9.6. Acknowledgments -- References -- Chapter 10 Controls on the Hydrological and Topographic Evolution of Shield Volcanoes and Volcanic Ocean Islands -- 10.1. Introduction -- 10.2. A General Framework for Volcanic Landscape Evolution -- 10.3. Insights from a Global Compilation of Volcanic Ocean Islands and Shield Volcanoes -- 10.4. Phenomena Driving Landscape Evolution -- 10.4.1. Soil development and dust deposition set the stage for landscape dissection -- 10.4.2. Chemical and physical erosion rates change throughout landscape evolution -- 10.4.3. Precipitation rate affects erosion and soil development -- 10.4.4. Flank collapses can hasten topographic dissection -- 10.4.5. Volcanic architecture and tectonics constrain the patterns of landscape evolution -- 10.5. Other Controls on Volcanic Landscape Evolution -- 10.6. Conclusions -- 10.7. Acknowledgments -- References -- Chapter 11 Climate and the Global Reach of the Galápagos Archipelago: State of the Knowledge -- 11.1. Climatic and Oceanographic Setting -- 11.2. Influence on the Equilibrium State of the Tropical Pacific -- 11.2.1. Numerical modeling -- 11.2.2. Observations -- 11.2.3. Global climate modeling -- 11.3. Relationship with Climate Variability and Change -- 11.3.1. Islands in the crosshairs -- 11.3.2. Role in interannual climate variability (ENSO) -- 11.3.3. Role in anthropogenic climate change -- 11.4. Recap and Future Directions -- 11.5. Acknowledgments -- References -- Chapter 12 Assessment of the Chile 2010 and Japan 2011 Tsunami Events in the Galápagos Islands -- 12.1. Introduction -- 12.2. Background -- 12.3. Method of Analysis. , 12.4. Results -- 12.4.1. Tsunami Maule, Chile 2010 -- 12.4.2. Tsunami Tohoku, Japan 2011 -- 12.5. Discussion -- 12.6. Conclusions -- References -- Chapter 13 Patterns in Galápagos Magmatism Arising from the Upper Mantle Dynamics of Plume-Ridge Interaction -- 13.1. Introduction -- 13.2. Methods -- 13.2.1. Mantle convection -- 13.2.2. Model mantle heterogeneity, melting, and magma composition -- 13.3. Results: Predicted and Observed Magma Flux -- 13.3.1. Model 1: Plume with low viscosity, without a dependence on water content -- 13.3.2. Model 2: High viscosity in the shallowest upper mantle with the dependence on water content -- 13.4. Results: Predicted and Observed Magma Compositions -- 13.4.1. Model 1 geochemical variations -- 13.4.2. Model 2 geochemical variations -- 13.4.3. Along-axis variations in incompatible element concentration -- 13.5. Discussion -- 13.5.1. Model limitations and robustness of model results -- 13.5.2. The case for a low-viscosity Galápagos plume -- 13.5.3. The nature of heterogeneity in the Galápagos plume and ambient mantle -- 13.5.4. Incompatible element concentrations along the Galápagos Spreading Center -- 13.6. Conclusions -- 13.7. Acknowledgments -- References -- Chapter 14 Variations in Crustal Thickness, Plate Rigidity, and Volcanic Processes Throughout the Northern Galápagos Volcanic Province -- 14.1. Introduction -- 14.1.1. The mechanics of plume-ridge and plume-lithosphere interaction -- 14.1.2. Along- and off-axis expressions of the Galápagos mantle plume -- 14.2. Data -- 14.3. Gravity Anomalies -- 14.3.1. Free air anomaly -- 14.3.2. Mantle Bouguer Anomaly -- 14.3.3. Residual Mantle Bouguer Anomaly -- 14.4. Gravity-Derived Crustal Thickness Variations -- 14.4.1. Inversion of MBA for crustal thickness -- 14.4.2. Inversion results -- 14.4.3. Other contributions to the MBA. , 14.5. Plate Flexure Associated with the Galápagos Lineaments.
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  • 5
    ISSN: 1523-5378
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Medicine
    Notes: Background.The role of the temperature of the diet as a potential etiological factor for gastritis or peptic ulcer disease has been postulated since the beginning of the century. Animal studies have demonstrated damage to gastric mucosa caused by hot water at 60 to 80°C. In the pre-Helicobacter pylori era it was reported that the majority of ulcer patients preferred hot drinks. It also was reported that the temperature of choice for drinks increased with severity of histological grade of gastritis. We evaluated the association between the preferred temperature of hot drinks and the presence of H. pylori infection. Methods. We tested the temperature of choice for hot drinking liquids among 12 H. pylori-negative and 43 H. pylori-positive volunteers. We also compared the effect of H. pylori therapy on hot drink temperature preference and, in 32 individuals, whether there was a relation between temperature and the degree of gastric atrophy. Results.There was no difference in the preferred temperature for hot drinks between those volunteers with and without H. pylori infection (63.4°± 6°C compared to 61.3°± 7°C, respectively) (mean ± 1 SD, p=.3) There was no change in preferred temperature after successful therapy of the H. pylori infection compared to unsuccessful H. pylori therapy, nor was there a correlation between the preferred temperature and the presence, absence, or degree of gastric atrophy (r2 〈 0.001). Conclusion. The temperature of preference for hot drinks was not influenced by H. pylori infection or by the presence of atrophic gastritis.
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Helicobacter 1 (1996), S. 0 
    ISSN: 1523-5378
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Medicine
    Notes: The factors influencing the acquisition and prevalence of Helicobacter pylori infection remain incompletely understood. In Russia, the demographic and socioeconomic factors are relatively similar, allowing investigation of risk factors that might not be identifiable in a more diverse population. Materials and Methods.Sero-prevalence of H. pylori infection was studied in 520 asymptomatic individuals between the ages of 1 and 75 years, residing in St. Petersburg, Russia. Forty-four children lived in orphanages or communal apartments. Demographic information and socioeconomic factors were evaluated, including educational level, income, and living conditions. Helicobacter pylori status was evaluated by using an enzyme-linked immunosorbent assay for anti-H. pylori IgG. Results.The prevalence of H. pylori infection was 44% in children and 88% in adults (P 〈 .001). In adults, H. pylori prevalence was independent of socioeconomic factors. The crude and the age-adjusted odds ratios (ORs) in children showed an inverse correlation between the mother's educational level and H. pylori seropositivity [e.g., OR, 1.8; (95% confidence interval (CI) = 1–3.2] for children whose mothers completed only 8 to 10 years of school compared to children whose mothers completed university. Overcrowding in childhood also was associated with increased H. pylori prevalence. Children from orphanages and communal apartments had the highest crowding index and also were at the greatest risk for H. pylori acquisition (age-adjusted OR, 2.1; 95% CI = 1.2–2.5). Conclusions.The prevalence of H. pylori infection in Russia correlated with socioeconomic factors, suggesting there are differences sufficient to affect H. pylori transmission. The prevalence of H. pylori infection during childhood forms the basis for the variances in prevalence among populations.
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  • 7
    ISSN: 1523-5378
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Medicine
    Notes: The objective of this research was to evaluate the outcomes and costs of alternative approaches to managing patients previously treated for peptic ulcer disease and Helicobacter pylori infection.〈section xml:id="abs1-3"〉〈title type="main"〉Materials and Methods.A decision-analytic model was used to compare (1a) urease breath testing (UBT) for assessment of H. pylori status versus (1b) observation without further testing or treatment, among patients who were symptom-free following initial antimicrobial and antisecretory therapy for endoscopically demonstrated ulcer and H. pylori infection; and (2a) UBT versus (2b) repeat endoscopy with H. pylori testing, and versus (2c) repeat antimicrobial and antisecretory therapy without further testing, among patients who remained symptomatic following initial therapy.〈section xml:id="abs1-4"〉〈title type="main"〉Results.Among patients who were symptom free after initial therapy, 6.1% receiving UBT had symptomatic ulcer at one year, compared to 18.2% of those simply observed. The expected first-year cost per symptom-free patient following initial therapy was $591 for UBT compared to $480 for observation. Among patients with persistent symptoms after initial therapy, 21% receiving repeat therapy had symptomatic ulcer at one year, compared to 23.8% receiving repeat endoscopy, and 23.3% receiving UBT. Corresponding medical costs per patient were, respectively, $766, $1787 and $1122.〈section xml:id="abs1-5"〉〈title type="main"〉Conclusions.The optimal approach to managing patients following initial treatment for ulcer and H. pylori infection depends on symptom status following initial therapy. For symptomatic patients, the preferred approach is to prescribe a repeat course of antimicrobial and antisecretory therapy. For patients without symptoms following initial therapy, UBT is the preferred approach because it is associated with a threefold lower risk of symptomatic ulcer at one year, although it costs an additional $110 per patient, compared with observation.
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  • 8
    ISSN: 1523-5378
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Medicine
    Notes: Background. Childhood is known to be a major risk period for acquiring Helicobacter pylori infection. Studies of the epidemiology of H. pylori infection depend on the validity of the diagnostic tools used to detect the infection in the pediatric setting. This study aims to conduct a combination of diagnostic tests on the same children, evaluate the sensitivity and the specificity of IgG antibody testing compared with the 13C-urea breath test, and examine the variability in the prevalence of H. pylori infection in asymptomatic children based on the use of different diagnostic tests.Methods. 13C-urea breath test (13C-UBT), whole blood FlexSure (systemic antibodies), and OraSure (salivary antibodies) tests were conducted on 287 asymptomatic children (151 boys, 136 girls; ages 2–18 years). The three tests were conducted on each child during the same day. The prevalence was calculated using each test independently.Results. H. pylori infection was detected in 32%, 22%, or 18% of the studied children, based on UBT, OraSure, or FlexSure, respectively. A total of 103 children tested positive for any one test (92 on UBT, 8 on FlexSure, 3 on OraSure), giving a prevalence of 35% based on the “parallel” method. Only 39 children tested positive in all three tests, giving a prevalence of 14% based on the “serial” method. Using the UBT as the gold standard, the sensitivity of FlexSure and OraSure were 48% and 65%, respectively, and the specificity of both tests was greater than 95%. When we applied the parallel method, the sensitivity and specificity of the combined antibody tests (FlexSure+OraSure) compared to the UBT were 71% and 95%, respectively.Conclusions. Among asymptomatic children, there is a wide variation in the prevalence of H. pylori infection based on the diagnostic test used. The study shows that antibody assays are less suitable than the UBT. However, under certain conditions, the IgG assays (combined systemic, salivary, or both) are less expensive alternative tools to the UBT for epidemiological studies in children.
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  • 9
    Electronic Resource
    Electronic Resource
    Cambridge, MA, USA : Blackwell Science, Inc.
    Helicobacter 2 (1997), S. 0 
    ISSN: 1523-5378
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Medicine
    Notes: Gastric sucrose permeability is a noninvasive marker that reliably increases in association with gastrointestinal injury due to use of nonsteroidal antiinflammatory drugs. Despite the effect of Helicobacter pylori infection on the gastric mucosa, in a previous study we were unable to demonstrate that H. pylori infection was associated with abnormal gastric sucrose permeability. Our goal in this study was to explore further whether H. pylori infection changed gastric permeability; therefore, we evaluated the effect of treatment of H. pylori infection on gastric permeability to sucrose and the relation of sucrose permeability to density of polymorphonuclear leukocytes.〈section xml:id="abs1-2"〉〈title type="main"〉Materials and Methods.Five hundred milliliters of a solution containing 100 gm of sucrose was ingested by the subject at bedtime. Overnight urine was collected and assayed for sucrose by high-performance liquid chromatography. Sucrose permeability was assessed both before and approximately 4 weeks after anti–H. pylori therapy.〈section xml:id="abs1-3"〉〈title type="main"〉Results.Seventeen asymptomatic H. pylori–infected volunteers participated; 8 were cured. Sucrose permeability was in the range commonly found in normal controls both before and after anti–H. pylori therapy (mean excretion, 76.3 mg; range, 13–171 mg). Gastric sucrose permeability correlated with the density of polymorphonulcear cell infiltration of the mucosa. Cure of the H. pylori infection was associated with a small but significant decrease in sucrose permeability (98.8 ± 18 mg to 51.7 ± 9.8 mg (p = .01). Sucrose permeability was greater in those with a high density of mucosal polymorphonuclear cells compared to those with lower scores (119.5 ± 4 vs 71.4 ± 13 for those with scores ≥ 5 compared to scores ≤ 4;p = .023). Failed therapy resulted in an increase in the mucosal density of polymorphonuclear infiltration and sucrose permeability (56.4 ± 13 mg–99.7 ± 19 mg pretreatment vs posttreatment, respectively;p = .031).〈section xml:id="abs1-4"〉〈title type="main"〉Conclusion. H. pylori gastritis causes a small but measurable increase in gastric permeability to sucrose that may reflect epithelial transmigration of neutrophils.
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  • 10
    Electronic Resource
    Electronic Resource
    Boston, MA, USA : Blackwell Science Inc
    Helicobacter 4 (1999), S. 0 
    ISSN: 1523-5378
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Medicine
    Notes: Background. The β-lactam group of antibiotics kills bacteria by inhibiting the terminal stages of peptidoglycan metabolism. We have recently identified amoxicillin-resistant Helicobacter pylori, none of which expressed β-lactamase. Penicillin-binding proteins (PBPs) represent a group of target enzymes for the β-lactam antibiotic family, and alterations in PBPs have been described in other penicillin-resistant bacteria. The amoxicillin-resistant phenotype characteristically was lost after freezing but could be restored by consecutive transfers into gradient plates.Materials and Methods. To determine whether amoxicillin resistance in H. pylori was related to alterations in any of the H. pylori PBPs, five H. pylori strains resistant to amoxicillin and three amoxicillin-sensitive strains were tested. PBPs were extracted from bacteria grown to logarithmic phase, labeled in vivo with 3H-benzylpenicillin, and analyzed by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and fluorography. Four main PBPs were separated from all amoxicillin-sensitive H. pylori strains.Results. Only three of the four main PBPs were found in the amoxicillin-resistant H. pylori strains. The differentially detectable PBP (PBP D) had an apparent molecular weight of 30 to 32 kD.Conclusion. These results suggest that PBP D might play a role in the amoxicillin-resistant phenotype of H. pylori strains lacking β-lactamase activity.
    Type of Medium: Electronic Resource
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