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  • 1
    In: Blood, American Society of Hematology, Vol. 136, No. Supplement 1 ( 2020-11-5), p. 13-13
    Abstract: Thrombosis is the major cause of morbidity and mortality in polycythemia vera (PV) and essential thrombocythemia (ET). Age ≥60 years (y) and/or history of thrombosis labels patients (pts) as high-risk for thrombosis. Yet, thrombosis frequently occurs prior to the diagnosis of PV/ET. In a multicenter study of the East German Study Group (HINC-207; OSHO #091), the interaction between age and time occurrence of the first thrombosis as risk factors for thrombosis after diagnosis was studied. Methods After IRB approvals, JAK2 mutated adults with PV or ET were prospectively enrolled in 9 centers and centrally stratified in a one to two ratio (group A: pts with a history of thrombosis; group B: pts without thrombosis) with a pre-planned minimum of 60:120 pts. Based on a longitudinal and cross-sectional design, clinical and laboratory data at diagnosis, last follow-up, and thrombosis (for group A) were collected. Thrombosis prior to diagnosis was labeled as A1 and thrombosis after diagnosis as A2. Thrombosis risk factors were grouped into age-, previous thrombosis-, thrombosis prior to PV/ET-, cardiovascular (CV)-, thrombophilia-, and disease- (JAK2 allele burden, Hct, and WBC) related. Additionally, therapies [aspirin (ASS), anticoagulation, phlebotomy, and cytoreduction] and data from a study-own patient questionnaire were included. All pts signed informed consent. The primary endpoint was the phenotypic diversity in JAK2-mutated ET and PV pts with or without thrombosis. Results From April to Dec, 2019, 246 pts were recruited. Data on 237 pts (median age 62y; 59% females, 58% PV) are available. At diagnosis, pts in group A (n=71, median age 59.5y) tended to be younger than those in group B (n=166, median age 63y) (p=0.07). Yet, 70.4% thrombotic events (venous: median age 46.5y; arterial: median age 57y) occurred in A1 and correlated with younger age (p=0.03). Only 3 pts developed a second event after diagnosis. These were counted in A2 (n=24, median age at thrombosis: 61y). Overall, thrombosis occurred either prior to or within the first 3y after diagnosis in 63/71 (89%) pts. Age & gt;60y could not be identified as a risk factor for thrombosis or type of thrombosis at any time point. The 5 y probability of no thrombotic event after diagnosis in pts & gt;60y was 90.4% vs. 89.2% for pts & lt;60y (p=0.8) and that of a thrombotic event & gt;3y after diagnosis in pts & gt;60y was 3.7% vs. 4.9% for pts & lt;60y (p=0.7). Similarly, A1 did not correlate with A2 (p=0.3). With 1691 patient-years for the entire cohort, the incidence of thrombosis after PV/ET diagnosis was 0.7 for arterial and 0.6 for venous events per 100 patient-years. Smoking was more prevalent in pts & gt;60y (p=0.003) and was not associated with thrombosis. Irrespective of age, hypertension (65%, p=0.03), hyperlipidemia (19%, p=0.008), and diabetes (16.4%, p=0.05) were frequent and correlated with A2 while atrial fibrillation (p=0.03) and inherited thrombophilia risk factors (p & lt;0.00) with A1. JAK2 allele burden (median 19%) and Hct & gt;45% (median 45%) at diagnosis correlated strongly with age & gt;60y (p=0.005) but not with A, A1, or A2, although Hct & gt;45% at diagnosis correlated with A2 in PV (p=0.001). Surprisingly, a Hct & gt;45% at thrombosis was more frequently present in A1 (55%) vs A2 (30%) (p & lt;0.00). Median WBC at diagnosis was higher in B compared to A (p=0.004), strongly associated with age & gt;60y (p & lt;0.00) but not with A2. WBC & gt;15% at thrombosis did not correlate with A. Age rather than thrombosis was the trigger for cytoreduction [82% hydroxyurea (HU) in B pts & gt;60y vs 53% in A pts & lt;60y] (p & lt;0.00). In PV, ASS did not correlate with thrombosis (25% of pts in B did not receive ASS). Cytoreduction, interval between diagnosis and cytoreduction, nor the duration of exposure correlated with thrombosis. Conclusions: The majority of thrombotic events occurred prior to or within the first 3 years after the diagnosis of JAK2 mutated PV/ET and were associated with CV-risk factors rather than older age. Phenotypic features such as Hct & gt;45%, high WBC, and JAK2 allele burden were associated with age & gt;60y and less with thrombosis. Their value as surrogate markers for therapeutic interventions to reduce thrombosis needs to be critically evaluated in larger series. Whether adequate PV/ET- or CV-risk- treatments account for the low rate of CV events after diagnosis (despite a higher incidence of CV-risk factors) compared to the general population could not be answered due to study design and needs to be addressed prospectively. Disclosures Al-Ali: Novartis: Honoraria, Research Funding; Celgene: Honoraria, Research Funding.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2020
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  • 2
    In: Journal of Clinical Microbiology, American Society for Microbiology, Vol. 52, No. 4 ( 2014-04), p. 1052-1059
    Abstract: Limited performance data from line probe assays (LPAs), nucleic acid tests used for the rapid diagnosis of tuberculosis (TB), nontuberculosis mycobacteria (NTM), and Mycobacterium tuberculosis drug resistance are available for HIV-infected individuals, in whom paucibacillary TB is common. In this study, the strategy of testing sputum with GenoType MTBDRplus (MTBDR-Plus) and GenoType Direct LPA (Direct LPA) was compared to a gold standard of one mycobacterial growth indicator tube (MGIT) liquid culture. HIV-positive (HIV + ) individuals with suspected TB from southern Africa and South America with 〈 7 days of TB treatment had 1 sputum specimen tested with Direct LPA, MTBDR-Plus LPA, smear microscopy, MGIT, biochemical identification of mycobacterial species, and culture-based drug-susceptibility testing (DST). Of 639 participants, 59.3% were MGIT M. tuberculosis culture positive, of which 276 (72.8%) were acid-fast bacillus (AFB) smear positive. MTBDR-Plus had a sensitivity of 81.0% and a specificity of 100%, with sensitivities of 44.1% in AFB smear-negative versus 94.6% in AFB smear-positive specimens. For specimens that were positive for M. tuberculosis by MTBDR-Plus, the sensitivity and specificity for rifampin resistance were 91.7% and 96.6%, respectively, and for isoniazid (INH) they were 70.6% and 99.1%. The Direct LPA had a sensitivity of 88.4% and a specificity of 94.6% for M. tuberculosis detection, with a sensitivity of 72.5% in smear-negative specimens. Ten of 639 MGIT cultures grew Mycobacterium avium complex or Mycobacterium kansasii , half of which were detected by Direct LPA. Both LPA assays performed well in specimens from HIV-infected individuals, including in AFB smear-negative specimens, with 72.5% sensitivity for M. tuberculosis identification with the Direct LPA and 44.1% sensitivity with MTBDR-Plus. LPAs have a continued role for use in settings where rapid identification of INH resistance and clinically relevant NTM are priorities.
    Type of Medium: Online Resource
    ISSN: 0095-1137 , 1098-660X
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    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2014
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  • 3
    Online Resource
    Online Resource
    AOSIS ; 2023
    In:  African Journal of Laboratory Medicine Vol. 12, No. 1 ( 2023-08-30)
    In: African Journal of Laboratory Medicine, AOSIS, Vol. 12, No. 1 ( 2023-08-30)
    Type of Medium: Online Resource
    ISSN: 2225-2010 , 2225-2002
    Language: English
    Publisher: AOSIS
    Publication Date: 2023
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  • 4
    In: Nature Ecology & Evolution, Springer Science and Business Media LLC, Vol. 2, No. 12 ( 2018-11-19), p. 1906-1917
    Type of Medium: Online Resource
    ISSN: 2397-334X
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2018
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  • 5
    In: Global Ecology and Biogeography, Wiley, Vol. 30, No. 9 ( 2021-09), p. 1740-1764
    Abstract: Assessing biodiversity status and trends in plant communities is critical for understanding, quantifying and predicting the effects of global change on ecosystems. Vegetation plots record the occurrence or abundance of all plant species co‐occurring within delimited local areas. This allows species absences to be inferred, information seldom provided by existing global plant datasets. Although many vegetation plots have been recorded, most are not available to the global research community. A recent initiative, called ‘sPlot’, compiled the first global vegetation plot database, and continues to grow and curate it. The sPlot database, however, is extremely unbalanced spatially and environmentally, and is not open‐access. Here, we address both these issues by (a) resampling the vegetation plots using several environmental variables as sampling strata and (b) securing permission from data holders of 105 local‐to‐regional datasets to openly release data. We thus present sPlotOpen, the largest open‐access dataset of vegetation plots ever released. sPlotOpen can be used to explore global diversity at the plant community level, as ground truth data in remote sensing applications, or as a baseline for biodiversity monitoring. Main types of variable contained Vegetation plots ( n  = 95,104) recording cover or abundance of naturally co‐occurring vascular plant species within delimited areas. sPlotOpen contains three partially overlapping resampled datasets ( c . 50,000 plots each), to be used as replicates in global analyses. Besides geographical location, date, plot size, biome, elevation, slope, aspect, vegetation type, naturalness, coverage of various vegetation layers, and source dataset, plot‐level data also include community‐weighted means and variances of 18 plant functional traits from the TRY Plant Trait Database. Spatial location and grain Global, 0.01–40,000 m². Time period and grain 1888–2015, recording dates. Major taxa and level of measurement 42,677 vascular plant taxa, plot‐level records. Software format Three main matrices (.csv), relationally linked.
    Type of Medium: Online Resource
    ISSN: 1466-822X , 1466-8238
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
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  • 6
    In: Viruses, MDPI AG, Vol. 14, No. 7 ( 2022-06-29), p. 1426-
    Abstract: Introduction: Rapid initiation of antiretroviral therapy (ART) in early HIV infection is important to limit seeding of the viral reservoir. A number of studies have shown that if ART is commenced prior to seroconversion, the seroconversion may, or may not, occur. We aimed to assess whether seroreversion or no seroconversion occurs using samples collected during an early treatment study in South Africa. Methods: We tested 10 longitudinal samples collected over three years from 70 blood donors who initiated ART after detection of acute or early HIV infection during donation screening on fourth- and fifth-generation HIV antibody and RNA assays, and three point of care (POC) rapid tests. Donors were allocated to three treatment groups: (1) very early, (2) early, and (3) later. Longitudinal samples were grouped into time bins post-treatment initiation. Results: On all three high-throughput HIV antibody assays, no clear pattern of declining signal intensity was observed over time after ART initiation in any of the treatment initiation groups and 100% detection was obtained. The Abbott Determine POC assay showed 100% detection at all time points with no seroreversion. However, the Abbott ABON HIV1 and OraSure OraQuick POC assays showed lower proportions of detection in all time bins in the very early treated group, ranging from 50.0% (95% CI: 26.8–73.2%) to 83.1% (95% CI: 64.2–93.0%), and moderate detection rates in the early and later-treated groups. Conclusion: While our findings are generally reassuring for HIV detection when high-throughput serological screening assays are used, POC assays may have lower sensitivity for detection of HIV infection after early treatment. Findings are relevant for blood safety and other settings where POC assays are used.
    Type of Medium: Online Resource
    ISSN: 1999-4915
    Language: English
    Publisher: MDPI AG
    Publication Date: 2022
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  • 7
    In: PLoS ONE, Public Library of Science (PLoS), Vol. 8, No. 12 ( 2013-12-6), p. e74900-
    Type of Medium: Online Resource
    ISSN: 1932-6203
    Language: English
    Publisher: Public Library of Science (PLoS)
    Publication Date: 2013
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  • 8
    Online Resource
    Online Resource
    Wiley ; 2019
    In:  ISBT Science Series Vol. 14, No. 2 ( 2019-05), p. 176-182
    In: ISBT Science Series, Wiley, Vol. 14, No. 2 ( 2019-05), p. 176-182
    Abstract: Globally, bacterial contamination of platelets remains the major transfusion‐related infectious risk. Limited data are available from low‐middle income countries. The South African National Blood Service routinely tests a percentage of apheresis platelets for bacterial contamination. We report on contamination rates from January 2011 to December 2016. Methods A retrospective analysis of the surveillance data from apheresis platelets was performed. Two to 4 ml of each apheresis product was collected aseptically and divided equally into an aerobic and anaerobic culture bottle using the BacT/ALERT (bioMerieux) or BACTEC™ (Beckton Dickinson) systems. Bacterial identification was done using the MicroScan (Beckman Coulter) system. Results A total of 87 841 apheresis platelets were collected between 2011 and 2016 of which 18% were tested. The average positive culture rate was 2·7%, ranging between 0·6% (2011) and 5·22% (2015). Gram‐positive bacteria constituted 94% of all isolates (269/285), ten (4%) gram‐negative bacteria and 6 (2%) fungi were detected. The most common bacterial isolates were Cutibacterium acnes (35%), coagulase‐negative Staphylococci (26%), Bacillus spp. (8%), Corynebacteria spp. (8%). A total of nine highly pathogenic bacteria were isolated: two Acinetobacter spp, one each of Enterobacter spp., Serratia spp., Klebsiella spp., one Staphylococcus aureus and three Listeria spp. Average time to positivity for bacteria was 5·9 days. No cases of sepsis or death were reported during this time. Conclusion Bacterial contamination rates, mostly due to gram‐positive bacteria, increased since 2011. Bacterial screening must be aligned with international recommendations, and novel technologies should be explored to reduce the residual risk.
    Type of Medium: Online Resource
    ISSN: 1751-2816 , 1751-2824
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2019
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  • 9
    In: Journal of Vegetation Science, Wiley, Vol. 31, No. 5 ( 2020-09), p. 792-802
    Abstract: Compensatory dynamics are described as one of the main mechanisms that increase community stability, e.g., where decreases of some species on a year‐to‐year basis are offset by an increase in others. Deviations from perfect synchrony between species (asynchrony) have therefore been advocated as an important mechanism underlying biodiversity effects on stability. However, it is unclear to what extent existing measures of synchrony actually capture the signal of year‐to‐year species fluctuations in the presence of long‐term directional trends in both species abundance and composition (species directional trends hereafter). Such directional trends may lead to a misinterpretation of indices commonly used to reflect year‐to‐year synchrony. Methods An approach based on three‐term local quadrat variance ( T 3) which assesses population variability in a three‐year moving window, was used to overcome species directional trend effects. This “detrending” approach was applied to common indices of synchrony across a worldwide collection of 77 temporal plant community datasets comprising almost 7,800 individual plots sampled for at least six years. Plots included were either maintained under constant “control” conditions over time or were subjected to different management or disturbance treatments. Results Accounting for directional trends increased the detection of year‐to‐year synchronous patterns in all synchrony indices considered. Specifically, synchrony values increased significantly in ~40% of the datasets with the T 3 detrending approach while in ~10% synchrony decreased. For the 38 studies with both control and manipulated conditions, the increase in synchrony values was stronger for longer time series, particularly following experimental manipulation. Conclusions Species’ long‐term directional trends can affect synchrony and stability measures potentially masking the ecological mechanism causing year‐to‐year fluctuations. As such, previous studies on community stability might have overemphasised the role of compensatory dynamics in real‐world ecosystems, and particularly in manipulative conditions, when not considering the possible overriding effects of long‐term directional trends.
    Type of Medium: Online Resource
    ISSN: 1100-9233 , 1654-1103
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2020
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    detail.hit.zdb_id: 1053769-7
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    SSG: 23
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  • 10
    In: Journal of Vegetation Science, Wiley, Vol. 32, No. 4 ( 2021-07)
    Abstract: Understanding fine‐grain diversity patterns across large spatial extents is fundamental for macroecological research and biodiversity conservation. Using the GrassPlot database, we provide benchmarks of fine‐grain richness values of Palaearctic open habitats for vascular plants, bryophytes, lichens and complete vegetation (i.e., the sum of the former three groups). Location Palaearctic biogeographic realm. Methods We used 126,524 plots of eight standard grain sizes from the GrassPlot database: 0.0001, 0.001, 0.01, 0.1, 1, 10, 100 and 1,000 m 2 and calculated the mean richness and standard deviations, as well as maximum, minimum, median, and first and third quartiles for each combination of grain size, taxonomic group, biome, region, vegetation type and phytosociological class. Results Patterns of plant diversity in vegetation types and biomes differ across grain sizes and taxonomic groups. Overall, secondary (mostly semi‐natural) grasslands and natural grasslands are the richest vegetation type. The open‐access file ”GrassPlot Diversity Benchmarks” and the web tool “GrassPlot Diversity Explorer” are now available online ( https://edgg.org/databases/GrasslandDiversityExplorer ) and provide more insights into species richness patterns in the Palaearctic open habitats. Conclusions The GrassPlot Diversity Benchmarks provide high‐quality data on species richness in open habitat types across the Palaearctic. These benchmark data can be used in vegetation ecology, macroecology, biodiversity conservation and data quality checking. While the amount of data in the underlying GrassPlot database and their spatial coverage are smaller than in other extensive vegetation‐plot databases, species recordings in GrassPlot are on average more complete, making it a valuable complementary data source in macroecology.
    Type of Medium: Online Resource
    ISSN: 1100-9233 , 1654-1103
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2021
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    detail.hit.zdb_id: 1053769-7
    SSG: 12
    SSG: 23
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