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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 136 (1983), S. 69-73 
    ISSN: 1432-072X
    Keywords: Desulfovibrio vulgaris ; Sodium transport ; Na+/H+ antiport ; Dissimilatory sulfate reduction ; Sulfate transport
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Entry of sodium ions into cells of Desulfovibrio vulgaris was studied. Translocation of Na+ was monitored by following the optical changes associated with shrinkage and swelling of the cells upon exposure to a hyperosmotic solution (200 mM) of sodium acetate or of sodium thiocyanate. By this technique the two solutes were found to equilibrate only after the addition of a protonophore such as carbonylcyanide m-chlorophenyl-hydrazone (CCCP). It was confirmed that acetate permeates electroneutrally as CH3COOH and thiocyanate electrogenically as SCN-. These findings suggest that Na+ is translocated by an electrogenic sodium ion/hydrogen ion antiport mechanism (H+/Na+〉1). Consistent with this interpretation is the observation that the addition of sodium acetate to a cell suspension resulted in the generation of a membrane potential (inside negative) and that of NaCl in an acidification of the external medium.
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  • 2
    ISSN: 1432-072X
    Keywords: Methanofuran ; Tetrahydromethanopterin ; Coenzyme F420 ; Corrinoids ; Cytochromes ; Autotrophic CO2 fixation ; Dissimilatory sulfate reduction ; Archaeoglobus species ; Methanogenic Archaea
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Archaeoglobus lithotrophicus is a hyperthermophilic Archaeon that grows on H2 and sulfate as energy sources and CO2 as sole carbon source. The autotrophic sulfate reducer was shown to contain all the enzyme activities and coenzymes of the reductive carbon monoxide dehydrogenase pathway for autotrophic CO2 fixation as operative in methanogenic Archaea. With the exception of carbon monoxide dehydrogenase these enzymes and coenzymes were also found in A. profundus. This organism grows lithotrophically on H2 and sulfate, but differs from A. lithotrophicus in that it cannot grow autotrophically: A. profundus requires acetate and CO2 for biosynthesis. The absence of carbon monoxide dehydrogenase in A. profundus is substantiated by the observation that this organism, in contrast to A. lithotrophicus, is not mini-methanogenic and contains only relatively low concentrations of corrinoids.
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  • 3
    ISSN: 1432-072X
    Keywords: Archaea ; Archaeoglobus ; Dissimilatory sulfate reduction ; Hyperthermophiles ; Pyruvate: ferredoxin (flavodoxin) oxidoreductase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Archaeoglobus fulgidus is a hyperthermophilic sulfate-reducing archaeon. In this communication we describe the purification and properties of pyruvate: ferredoxin oxidoreductase from this organism. The catabolic enzyme was purified 250-fold to apparent homogeneity with a yield of 16%. The native enzyme had an apparent molecular mass of 120 kDa and was composed of four different subunits of apparent molecular masses of 45, 33, 25, and 13 kDa, indicating and α β γ δ structure. Per mol, the enzyme contained 0.8 mol thiamine pyrophosphate, 9 mol non-heme iron, and 8 mol acid-labile sulfur. FAD, FMN, lipoic acid, and copper were not found. The purified enzyme showed an apparent K m for coenzyme A of 0.02 mM, for pyruvate of 0.3 mM, and for clostridial ferredoxin of 0.01 mM, an apparent V max of 64 U/mg (at 65°C) with a pH optimum near 7.5 and an Arrhenius activation energy of 75 kJ/mol (between 30 and 70°C). The temperature optimum was above 90°C. At 90°C, the enzyme lost 50% activity within 60 min in the presence of 2 M KCl. The enzyme did not catalyze the oxidation of 2-oxoglutarate, indolepyruvate, phenylpyruvate, glyoxylate, and hydroxypyruvate. The N-terminal amino acid sequences of the four subunits were determined. The sequence of the α-subunit had similarities to the N-terminal amino acid sequence of the α-subunit of the heterotetrameric pyruvate: ferredoxin oxidoreductase from Pyrococcus furiosus and from Thermotoga maritima, and unexpectedly, to the N-terminal amino acid sequence of the homodimeric pyruvate: ferredoxin oxidoreductase from proteobacteria and from cyanobacteria. No sequence similarities were found, however, between the α-subunits of the enzyme from A. fulgidus and the heterodimeric pyruvate: ferredoxin oxidoreductase from Halobacterium halobium.
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 137 (1984), S. 236-240 
    ISSN: 1432-072X
    Keywords: Desulfovibrio vulgaris ; Dissimilatory sulfate reduction ; Growth yields ; Chemostat cultures ; Pyruvate metabolism ; ATP synthesis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Desulfovibrio vulgaris (strain Marburg) was grown on H2 and sulfate as sole energy source in a chemostat limited by the sulfate supply. The biomass concentration and the sulfate concentration in the culture were determined as a function of the dilution rate. From the data a K S (saturation constant) for sulfate of 10 μM, a μmax of 0.23 h−1, and a $${\text{Y}}_{{\text{SO}}_{\text{4}} ^{2 - } }^{{\text{max}}}$$ of 13 g/mol were calculated. The organism was also grown in chemostat culture on H2 and sulfite, H2 and thiosulfate, and pyruvate (without sulfate). $${\text{Y}}_{{\text{SO}}_3 ^{2 - } }^{{\text{max}}}$$ was found to be 35 g/mol, $${\text{Y}}_{{\text{S}}_{\text{2}} {\text{O}}_{\text{3}} ^{2 - } }^{{\text{max}}}$$ 36 g/mol, and Y pyr max 10 g/mol. The growth yields are discussed with respect to ATP gains in dissimilatory sulfate reduction.
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 125 (1980), S. 167-174 
    ISSN: 1432-072X
    Keywords: Desulfovibrio vulgaris (Marburg) ; Dissimilatory sulfate reduction ; Vectorial electron transport ; Topography ; Hydrogenase ; Adenosine phosphosulfate reductase ; Desulfoviridin ; Thiosulfate reductase ; Cytochrome c 3 ; Cytochrome b ; Menaquinone ; Ferredoxin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Desulfovibrio vulgaris (Marburg) was grown on hydrogen plus sulfate as sole energy source in a medium containing excess iron. The topography of electron transport components was investigated. The bacterium contained per mg cells (dry weight) 30U hydrogenase (1U=1 μmol/min), 35 μg desulfoviridin (= bisulfite reductase), 0.6 U adenosine phosphosulfate reductase, 30 mU thiosulfate reductase, 0.3 nmol cytochrome c 3 (M r=13,000), 0.04 nmol cytochrome b, 0.85 nmol menaquinone, and 0.4 nmol ferredoxin. Hydrogenase (〉95%) and cytochrome c 3 (82%) were localized on the periplasmic side and desulfoviridin (≈95%), adenosine phosphosulfate reductase (87%), thiosulfate reductase (74%), and ferredoxin (71%) on the cytoplasmic side of the cytoplasmic membrane; menaquinone and cytochrome b were exlusively found in the membrane fraction. The location of the oxidoreductases indicate that in D. vulgaris (Marburg) H2 oxidation and sulfate reduction take place on opposite sides of the cytoplasmic membrane rather than on the same side, as has recently been proposed.
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  • 6
    ISSN: 0887-3585
    Keywords: Protein crystallization ; X-ray crystallography ; methanogenic Archaea ; hyperthermophilic enzymes ; halophilic enzymes ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine
    Notes: Formylmethanofuran:tetrahydromethanopterin formyltransferase from the hyperthermophilic methanogenic Archaeon Methanopyrus kandleri (growth temperature optimum 98°C) was crystallized by vapor diffusion methods. Crystal form M obtained with 2-methyl-2,4-pentanediol as precipitant displayed the space group P21 with unit cell parameters of a = 87.0 Å, b = 75.4 Å, c = 104.7 Å, and β = 113.9° and diffracted better than 2 Å resolution. Crystal form P grown from polyethylene glycol 8000 belonged to the space group I4122 and had unit cell parameters of 157.5 Å and 242.1 Å. Diffraction data to 1.73 Å were recorded. Crystal form S which was crystallized from (NH4)2SO4in the space group I4122 with unit cell parameters of 151.3 Å and 249.5 Å diffracted at least to 2.2 Å resolution. All crystal forms probably have four molecules per asymmetric unit and are suitable for X-ray structure analysis. © 1996 Wiley-Liss, Inc.
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  • 7
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Factor F430 from Methanogenic Bacteria: On the Nature of the Isolation Artefacts of F430, a Contribution to the Chemistry of F430 and the Conformational Stereochemistry of the Ligand Periphery of Hydroporphinoid Nickel(II) ComplexesFactor F430 (1), a coenzyme from methanogenic bacteria, when heated in aqueous solution isomerizes to 12,13-di-epi-F430 (5) via 13-epi-F430 (3). The equilibrium mixture of the three F430 isomers in aqueous phosphate buffer solution (pH 7, 100°) contains 88 % of 5, 8 % of 3, and 4 % of 1 (Scheme 1). The structural assignment for the F430 isomers rests on FAB-MS-, UV/VIS-, 1H- and 13C-NMR spectra of their pentamethyl esters. Chemical proof for the double epimerization at the two chiral centers of F430's ring C was provided by ozonolytic degradation of the di-epimer to give a ring-C-derived succinimide derivative that was shown to be the enantiomer of the one previously obtained by ozonolysis of F430M (see Scheme 2). The two F430 ring-C epimers 3 and 5 are the isolation artefacts described in the earlier F430 literature. F430 is susceptible to autoxidation in air and the product, that absorbs at 560 nm, was shown to be the 12,13-didehydro derivative 8 of F430 by spectroscopic characterization of its pentamethyl ester 9. The dehydrogenation product 8 can be diastereoselectively reduced with Zn in AcOH to give natural F430 as the main product rather than the thermodynamically more stable F430-di-epimer (Scheme 3). In the double epimerization of F430, the two ring-C side chains change from a trans-quasi-diaxial arrangement to the (locally) enantiomorphic position in which the same side chains are again in a trans-quasi-diaxial arrangement. This equilibrium paradox as well as the kinetic diastereoselectivity of the reduction of 12,13-didehydro-F430 (8) are rationalized to be consequences of the general phenomenon documented earlier (see the preceding paper) according to which hydroporphinoid Ni(II) complexes all show a characteristic conformational ruffling of their ligand system due to the tendency of the (small) Ni(II) ion to contract the size of the ligand's central coordination hole (see Fig. 5 and 6).
    Additional Material: 1 Ill.
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  • 8
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Factor F430 from Methanogenic Bacteria: Structure of the Porphninoid Ligand SystemA structure is proposed for F430M, a non-cristalline methanolysis product of isolates of the nickel-containing, porphinoid factor F430 from Methanobacterium thermoautotrophicum.Crucial to the structure determination are five incorporation experiments with M. thermoautotrophicum (strain Marburg) in which the specifically mono-13C-labeled biosynthetic precursors (2-13C), (3-13C), (4-13C)-, (5-13C) ALA (ALA = δ-amino-levulinic acid) and L-(methyl-13C)methionine were incorporated into F430 with high efficiency. The 13C-NMR,-spectra of the specifically labeled F430M samples derived therefrom, together with the UV./VIS. spectral data of F430M, contain all the information necessary for the deduction of the constitution of the F430M chromophore, assuming the established pattern of porphinoid biosynthesis to be operative in F430 biosynthesis. 1H-NMR. spectroscopy and, in particular, 1H-NMR.-NOE-difference spectroscopy corroborates and completes the constitutional assignments and, furthermore, makes possible an almost complete derivation of the molecule's relative configuration. Schemes 3 and 4 summarize the results of 1H-NMR. spectroscopy, presenting them within the context of the proposed structure for F430M. The assignment of absolute configuration implied in the formula is given preference because of F430M's very close structural and (assumed) biosynthetic relationship to sirohydrochlorin and vitamin B12 (with respect to ring C, the assignment is based on degradative evidence).According to the proposed structure, the nickel complex F430M possesses an uroporphinoid (Type III) ligand skeleton with an additional carbocyclic ring and a chromophore system not previously encountered among natural porphinoids. It can be considered to be a (tetrahydro) derivative of the corphin system, combining structural elements of both porphyrins and corrins.
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  • 9
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Factor F430 from Methanogenic Bacteria: Structure of the Protein-free FactorFactor F430, the porphinoid nickel-containing coenzyme of the methylcoenzyme-M reductase of metanogenic bacteria is shown to be the 33,83,122,133,182-pentaacid derivative of the pentamethylester F430M, the structure of which had been determined previously (see structural formulae 1 and 2). The structure assignment rests on chromatographic, UV/VIS-, CD-, IR-, and 13C-NMR-spectroscopic as well as FAB-mass spectral comparision of F430 with F430M and the pentaacid prepared by acid-catalyzed hydrolysis of F430M.In the cells of Methanobacterium thermoautotrophicum, factor F430 is present in a ‘bound’ and also, depending on the growth conditions, in ‘free’ form, the latter being defined as the part of total F430 that can be extracted from the cells under extremely mild conditions (80% EtOH at 0-4°). From the (protein)-‘bound’ form, F430 is extracted by subsequently treating the cells at 0-4° with 80% EtOH containing (e.g.), 2m LiCi.From both sources, the extracted factor is the same pentaacid, and there is no indication for the existence of a protein-free F430 species that would contain additional (covalently bound) structural elements.
    Additional Material: 17 Ill.
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  • 10
    ISSN: 0044-8249
    Keywords: Archaebakterien ; Carbokationen ; Enzyme ; Hydrogenasen ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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