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  • ABYSS; Accession number, genetics; ARK-XXIX/2.2; Assessment of bacterial life and matter cycling in deep-sea surface sediments; beta-glucosidase activity; Cell counts, standard deviation; Chitobiase activity; Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; HG_IV; Incubation duration; Multicorer with television; North Greenland Sea; Oxygen; Polarstern; Pressure; Prokaryotes, abundance as single cells; PS93/050-5/6; PS93.2; Replicates; Respiration rate, oxygen, sediment; Sample type; Station label; Treatment; TVMUC  (1)
  • ACUTE; Aquaculture practice in tropical coastal ecosystems - understanding ecological and socio-economic consequences; marine aquaculture; nutrient loading; Philippines  (1)
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  • 1
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    PANGAEA
    In:  Supplement to: Hoffmann, Katy; Hassenrück, Christiane; Salman-Carvalho, Verena; Holtappels, Moritz; Bienhold, Christina (2017): Response of bacterial communities to different detritus compositions in Arctic deep-sea sediments. Frontiers in Microbiology, 8, 266, https://doi.org/10.3389/fmicb.2017.00266
    Publication Date: 2023-03-16
    Description: In a multidisciplinary ex situ experiment, benthic bacterial deep-sea communities from 2,500 m water depth at the Long-Term Ecological Research Observatory HAUSGARTEN (stationPS93/050-5 and 6), were retrieved using a TV-guided multiple corer. Surface sediments (0 - 2 cm) of 16 cores were mixed with sterile filtered deep-sea water to a final sediment dilution of 3.5 fold. The slurries were split and supplemented with five different types of habitat-related detritus: chitin, as the most abundant biopolymer in the oceans, and four different naturally occurring Arctic algae species, i.e. Thalassiosira weissflogii, Emiliania huxleyi, Bacillaria sp. and Melosira arctica. Incubations were performed in five replicates, at in situ temperature and at atmospheric pressure, as well as at in situ pressure of 250 atm. At the start of the incubation and after 23 days, changes in key community functions, i.e. extracellular enzymatic activity, oxygen respiration and secondary production of biomass (bacterial cell numbers and biomass), were assessed along with changes in the bacterial community composition based on 16S rRNA gene and 16S rRNA Illumina sequencing. In summary, differences in community structure and in the uptake and remineralization of carbon in the different treatments suggest an effect of organic matter quality on bacterial diversity as well as on carbon turnover at the seafloor.
    Keywords: ABYSS; Accession number, genetics; ARK-XXIX/2.2; Assessment of bacterial life and matter cycling in deep-sea surface sediments; beta-glucosidase activity; Cell counts, standard deviation; Chitobiase activity; Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; HG_IV; Incubation duration; Multicorer with television; North Greenland Sea; Oxygen; Polarstern; Pressure; Prokaryotes, abundance as single cells; PS93/050-5/6; PS93.2; Replicates; Respiration rate, oxygen, sediment; Sample type; Station label; Treatment; TVMUC
    Type: Dataset
    Format: text/tab-separated-values, 1540 data points
    Location Call Number Limitation Availability
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  • 2
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    PANGAEA
    In:  Supplement to: Moncada, Chyrene; Hassenrück, Christiane; Gärdes, Astrid; Conaco, Cecilia (2019): Microbial community composition of sediments influenced by intensive mariculture activity. FEMS Microbiology Ecology, 95(2), https://doi.org/10.1093/femsec/fiz006
    Publication Date: 2024-04-22
    Description: Physicochemical parameters and relative abundance of selected nutrient cycling genes were measured in sediment and pore water samples taken from a fish farming area (Site S3 16◦23.097 N, 119◦55.551 E, depth 12.6m) and a control site (Site S1 16◦22.960 N, 119◦54.723 E, depth 15m) not influenced by fish farming. From each site, five pairs of cores representing five biological replicates were collected. One core from each pair was used for physicochemical analysis while the other cores were used for microbial community analysis. Samples from S1 were collected on 2017-06-10 and samples from S3 were collected the following day. The following parameters were measured from the sediment: grain size distribution, % Carbon (%C), % Nitrogen (%N), % total organic carbon (%Corg), and stable isotope (d13C and d15N) content. The following were measured in the pore water: dissolved organic carbon (DOC), total dissolved nitrogen (TDN), ammonium, phosphate, and silicate. Nitrogen (bacterial ammonia monooxygenase/ amoA and nitrite reductase/ nirK) and sulfur (dissimilatory sulfate reductase/ dsrA and sulfur oxidation/ soxB) cycling genes were quantified and normalized against the abundance of the 16S rRNA gene.
    Keywords: ACUTE; Aquaculture practice in tropical coastal ecosystems - understanding ecological and socio-economic consequences; marine aquaculture; nutrient loading; Philippines
    Type: Dataset
    Format: application/zip, 3 datasets
    Location Call Number Limitation Availability
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