Description: Zooplankton communities vary in space and time. Their composition is strongly influenced by lower trophic levels that are dependent on the availability of light and nutrients. As all marine ecosystems are relying on zooplankton as intermediate trophic step between primary production and higher trophic levels, changes in the zooplankton community composition and biomass can cascade through the food web with important impacts on fish communities and through that on fisheries yields. An intense fisheries exist around the Falkland Islands in the SW Atlantic Ocean, around 51° S, but to the best of our knowledge, no previous study has to date investigated the seasonal variation in zooplankton community composition in these waters. We show that copepods (39.2%), the larvae of the anomurid Grimothea gregaria (33.1%) and euphausiids (10.9%) dominate the local mesozooplankton community by biomass. All species showed seasonal patterns, including ontogenetic behaviour of G. gregaria migrating to deeper waters with development, which were significantly explained by temperature (p 〈 0.001). While overall biomass significantly decreased with distance from shore (p 〈 0.001), mesozooplankton diversity was highest at 30 km from shore. The presented study is the first assessment of the mesozooplankton biomass off the Falkland Islands and provides a first baseline to aid future ecosystem studies in the context of ecosystem based fisheries management in the region.

Description: Highlights: • A DEB model for M. leidyi was parameterized using 60 datasets from literature. • 12 °C might already be outside the optimal temperature range. • M. leidyi has high reserve turnover rates and a high structural component. • Delayed metabolic acceleration confers flexibility in controlling generation time. Abstract: Mnemiopsis leidyi is an invasive comb jelly which has successfully established itself in European seas. The species is known to produce spectacular blooms yet it is holoplanktonic and not much is known about its population dynamics in between. One way to gain insight on how M. leidyi might survive between blooms and how it can bloom so fast is to study how the metabolism of this species actually responds to environmental changes in food and temperature over its different life-stages. To this end we combined modelling and data analysis to study the energy budget of M. leidyi over its full life-cycle using Dynamic Energy Budget (DEB) theory and literature data. An analysis of data obtained at temperatures ranging from 8 to 30 °C suggests that the optimum thermal tolerance range of M. leidyi is higher than 12 °C. Furthermore M. leidyi seems to undergo a so-called metabolic acceleration after hatching. Intriguingly, the onset of the acceleration appears to be delayed and the data do not yet exist which allows determining what actually triggers it. It is hypothesised that this delay confers a lot of metabolic flexibility by controlling generation time. We compared the DEB model parameters for this species with those of another holoplanktonic gelatinous zooplankton species (Pelagia noctiluca). After accounting for differences in water content, the comparison shows just how fundamentally different the two energy allocation strategies are. P. noctiluca has an extremely high reserve capacity, low turnover times of reserve compounds and high resistance to shrinking. M. leidyi adopts the opposite strategy: it has a low reserve capacity, high turnover rates of reserve compounds and fast shrinking.

Description: Highlights: • Non-indigenous species (NIS) are increasingly recognized as a matter of concern. • The microbiome of native and NIS gelatinous zooplankton organisms are compared. • Next generation sequencing confirms sign. Species specific microbiome differences. • Indicator OTUs include bacteria which contain known pathogenic strains. • Microbiome monitoring of NIS should be considered for aquaculture risk assessments. Abstract: The translocation of non-indigenous species (NIS) around the world, especially in marine systems, is increasingly being recognized as a matter of concern. Species translocations have been shown to lead to wide ranging changes in food web structure and functioning. In addition to the direct effects of NIS, they could facilitate the accumulation or translocation of bacteria as part of their microbiomes. The Baltic Sea harbours many non-indigenous species, with most recent detection of the jellyfish Blackfordia virginica and the comb jelly Mnemiopsis leidyi in the low saline southwestern Baltic Sea. In this study, we used a multidisciplinary approach and investigated three gelatinous zooplankton species that co-occur in the same environment and feed on similar zooplankton food sources but show different histories of origin. The aim was to conduct a comparative microbiome analysis of indigenous and non-indigenous gelatinous zooplankton species in the low-saline southwestern Baltic Sea. Next-generation 16S rRNA marker gene sequencing of the V1/V2 region was employed to study the bacterial microbiome compositions. All tested species showed significant differences in their microbiome compositions (one way ANOSIM, R = 1, P 〈 0.008) with dissimilarities ranging from 85 to 92%. The indigenous jellyfish Aurelia aurita showed the highest bacterial operational taxonomic unit (OTU) richness. The overall differentiation between microbiomes was driven by eight indicator OTUs, which included Mycoplasma and Vibrio species. These bacteria can be problematic, as they include known pathogenic strains that are relevant to human health and aquaculture activities. Our results suggest that the impact assessment of NIS should consider potential pathogenic bacteria, enriched in the environment due to invasion, as potential risks to aquaculture activities.

Description: Current research highlights the importance of associated microbes in contributing to the functioning, health, and even adaptation of their animal, plant, and fungal hosts. As such, we are witnessing a shift in research that moves away from focusing on the eukaryotic host sensu stricto to research into the complex conglomerate of the host and its associated microorganisms (i.e., microbial eukaryotes, archaea, bacteria, and viruses), the so-called metaorganism, as the biological entity. While recent research supports and encourages the adoption of such an integrative view, it must be understood that microorganisms are not involved in all host processes and not all associated microorganisms are functionally important. As such, our intention here is to provide a critical review and evaluation of perspectives and limitations relevant to studying organisms in a metaorganism framework and the functional toolbox available to do so. We note that marker gene-guided approaches that primarily characterize microbial diversity are a first step in delineating associated microbes but are not sufficient to establish proof of their functional relevance. More sophisticated tools and experiments are necessary to reveal the specific functions of associated microbes. This can be accomplished through the study of metaorganisms in less complex environments, the targeted manipulation of microbial associates, or work at the mechanistic level with the toolbox available in model systems. We conclude that the metaorganism framework is a powerful new concept to help provide answers to longstanding biological questions such as the evolution and ecology of organismal complexity and the importance of organismal symbioses to ecosystem functioning. The intricacy of the metaorganism requires a holistic framework combining reductionist and integrative approaches to resolve metaorganism identities and to disclose the various roles that microorganisms play in the biology of their hosts.

Description: It is now recognised that the biology of almost any organism cannot be fully understood without recognising the existence and potential functional importance of associated microbes. Arguably, the emergence of this holistic viewpoint may never have occurred without the development of a crucial molecular technique, 16S rDNA amplicon sequencing, which allowed microbial communities to be easily profiled across a broad range of contexts. A diverse array of molecular techniques are now used to profile microbial communities, infer their evolutionary histories, visualise them in host tissues, and measure their molecular activity. In this review, we examine each of these categories of measurement and inference with a focus on the questions they make tractable, and the degree to which their capabilities and limitations shape our view of the holobiont.

Description: This article describes the biodiversity of gelatinous macrozooplankton and presents quantitative field data on their community composition and distribution pattern in the North Sea during August 2018. The data set consists of jellyfish and comb jelly species abundance estimates which are based on sampling at 62 stations in the central and southern North Sea covering Danish waters, the German Bight, waters off the Dutch coast as well as the western North Sea off the UK coast and the central North Sea. The sampling gear was a 13 m long MIK-net (modified Methot Isaac Kidd net; Ø 2 m, mesh size 1 mm, mesh size cod end 500 μm) deployed in double oblique hauls from the surface to 5 m above the sea floor. Samples were visually analysed for gelatinous macrozooplankton (〉2 mm) using a light table. Samples were processed within 1 hour after catch. In total, 6239 gelatinous macrozooplankton specimen were caught. Spatial distribution pattern described in this article include the jellyfish species Aequorea sp., Aurelia aurita, Beroe sp., Chrysaora hysoscella, Clytia hemisphaerica, Cyanea capillata, Cyanea lamarckii, Eirene viridula, Leuckartiara octona, Melicertum octocostatum, Obelia sp. as well as the comb jelly species Mnemiopsis leidyi and Pleurobrachia pileus. Further, size frequency distributions of abundant taxa are provided together with a summary of abundances as well as average, maximum and minimum sizes of all species. This dataset has not previously been published and is of high value for comparison with other – and future - investigations of gelatinous macrozooplankton in the North Sea. The data were obtained during an internationally coordinated, standard fishery survey which is carried out annually (Quarter 3 – North Sea – International Bottom Trawl Survey – Q3 NS-IBTS). The gained information could be used as baseline for a monitoring of potential changes in gelatinous macrozooplankton abundances to address the long standing question if gelatinous zooplankton are on the rise due to climate change induced stressors.

Description: Highlights: • Sightings of non-native of range expanding marine species in the SW Baltic Sea • Novel approach for classification of hydrographic conditions in the SW Baltic Sea • Linking sightings of species to hydrographic environmental anomalies Abstract: The Baltic Sea, located in northern Europe, is one of the largest brackish water bodies in the world. Salinity levels range from fresh water conditions in the northeast to full strength saline waters at its transition zone to the North Sea in the west. Most of the water exchange happens in the SW Baltic Sea, the Belt Sea, where fresh water exits the Baltic Sea at the surface, while high saline, oxygen rich water is entering the Baltic at depth. Due to the extended salinity gradient of the Baltic Sea, a variety of species occur at the limit of their physiological tolerance and preference, i.e. in areas and habitats not representing their marine or fresh water origin. Additionally, the Baltic Sea is known for its high share of non-indigenous species, which have established. In this study, we compiled extraordinary sightings of transient, non-native or potentially range expanding species in the SW Baltic Sea for a period from 2001 to 2018. We focused on jellyfish, squid, fishes and marine mammals and linked their occurrences to the local hydrography. Hydrographic conditions, such as water temperature and salinity, were obtained from a high spatio-temporally resolved hydrodynamic Baltic Sea model, covering a daily resolved 40-year time series. We investigated that changes in the occurrence of exceptional species reflect the dynamics of water mass exchange between the Kattegat/Skagerrak and the SW Baltic Sea. Our analyses show that these changes could be related to the presence of anomalously high saline water masses. However, only a minor part of the sightings was caused by major Baltic inflow events, which are important to sustain oxygen rich deep water in the central Baltic Sea. This documents that the hydrographically highly dynamic SW Baltic Sea needs special attention for monitoring of non-indigenous species, as (i) high saline and warm water intrusions are more frequent than currently believed and ii) can be linked to sightings of exceptional species in the SW Baltic Sea. Additionally, most of the recent sightings occurred during anomalously warm periods. This supports the hypothesis, that the Baltic Sea is presently a predominant receiver area for non-indigenous species from warmer regions of the world.

Description: Highlights: • Gelatinous zooplankton (GZ) is common in Eastern Tropical North Atlantic (ETNA). • Weak negative correlation between oxygen and key GZ groups with higher densities at lower oxygen conditions. • High GZ biomass also found at lowest oxygen concentration depths. • Strong positive correlation between temperature and key GZ group abundance. • GZ important component of oceanic ecosystems including low oxygenated waters. Physical and topographic characteristics can structure pelagic habitats and affect the plankton community composition. For example, oxygen minimum zones (OMZs) are expected to lead to a habitat compression for species with a high oxygen demand, while upwelling of nutrient-rich deep water at seamounts can locally increase productivity, especially in oligotrophic oceanic waters. Here we investigate the response of the gelatinous zooplankton (GZ) assemblage and biomass to differing oxygen conditions and to a seamount in the Eastern Tropical North Atlantic (ETNA) around the Cape Verde archipelago. A total of 16 GZ taxa (〉1100 specimens) were found in the upper 1000 m with distinct species-specific differences, such as the absence of deep-living species Atolla wyvillei and Periphylla periphylla above the shallow seamount summit. Statistical analyses considering the most prominent groups, present at all stations, namely Beroe spp., hydromedusae (including Zygocanna vagans, Halicreas minimum, Colobonema sericeum, Solmissus spp.) and total GZ, showed a strong positive correlation of abundance with temperature for all groups, whereas oxygen had a weak negative correlation only with abundances of Beroe spp. and hydromedusae. To account for size differences between species, we established length-weight regressions and investigated total GZ biomass changes in relation to physical (OMZ) and topographic characteristics. The highest GZ biomass was observed at depths of lowest oxygen concentrations and deepest depth strata at the southeastern flank of the seamount and at two stations south of the Cape Verde archipelago. Our data suggest that, irrespective of their patchy distribution, GZ organisms are ubiquitous food web members of the ETNA, and their habitat includes waters of low oxygen content.