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  • PANGAEA  (7)
  • Blackwell Publishing Ltd  (6)
  • ASLO (Association for the Sciences of Limnology and Oceanography)  (2)
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  • 1
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The gene (open reading frame Tm1155, g6pd) encoding glucose-6-phosphate dehydrogenase (G6PD, EC 1.1.1.49) of the hyperthermophilic bacterium Thermotoga maritima was cloned and functionally expressed in Escherichia coli. The purified recombinant enzyme is a homodimer with an apparent molecular mass of 95 kDa composed of 60-kDa subunits. Rate dependence (at 80°C) on glucose-6-phosphate and NADP+ followed Michaelis–Menten kinetics with apparent Km values of 0.15 mM and 0.03 mM, respectively; apparent Vmax values were about 20 U mg−1. The enzyme also reduced NAD+ (apparent Km 12 mM, Vmax 12 U mg−1). The 1000-fold higher catalytic activity (kcat/Km) with NADP+ over NAD+ defines the G6PD as NADP+ specific in vivo. G6PD activity was competitively inhibited by NADPH with a Ki value of 0.11 mM. With a temperature optimum of 92°C the enzyme is the most thermoactive G6PD described.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Annals of the New York Academy of Sciences 714 (1994), S. 0 
    ISSN: 1749-6632
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Natural Sciences in General
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The gene (open reading frame (ORF) Tm1469, glk) encoding ATP-dependent ROK (repressors, ORFs, sugar kinases) glucokinase (ATP-GLK, EC 2.7.1.2) of the hyperthermophilic bacterium Thermotoga maritima was cloned and functionally expressed in Escherichia coli. The purified recombinant enzyme is a homodimer with an apparent molecular mass of 80 kDa composed of 36-kDa subunits. Rate dependence (at 80°C) on glucose and ATP followed Michaelis–Menten kinetics with apparent Km values of 1.0 and 0.36 mM, respectively; apparent Vmax values were about 370 U mg−1. The enzyme was highly specific for glucose as phosphoryl acceptor. Besides glucose only 2-deoxyglucose was phosphorylated to some extent, whereas mannose and fructose were not used. With a temperature optimum of 93°C the enzyme is the most thermoactive bacterial ATP-GLK described.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Annals of the New York Academy of Sciences 384 (1982), S. 0 
    ISSN: 1749-6632
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Natural Sciences in General
    Type of Medium: Electronic Resource
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  • 5
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The metabolic interactions between proteinase-producing bacteria and other members of bacterial communities are poorly investigated, although they are important for the understanding of structure–function relationships in complex ecosystems. We constructed simple model communities consisting of proteolytic and non-proteolytic Pseudomonas fluorescens strains to identify relevant interactions and to assess their specific significance during the mobilization of protein for growth. The proteolytic or non-proteolytic model communities were established by co-inoculating proteolytic or proteinase-deficient Tn5-mutants of P. fluorescens strain ON2 with the non-proteolytic reporter strain DF57-N3 that expresses bioluminescence in response to nitrogen limitation. The growth medium was composed such that growth would be nitrogen limited in the absence of proteolytic activity. In the proteolytic communities data on growth and nitrogen availability showed that the protein hydrolysates were available to both the proteolytic and the non-proteolytic strain. Competition between these strains profoundly affected both growth and proteinase production. Hence, the mobilization of protein was closely coupled to the competitive success of the proteolytic strain. These findings provide new insight into the metabolic interactions that occur when protein is degraded in mixed bacterial communities.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 250 (2005), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The Escherichia coli strain Pgi-UdhA, a mutant of the strain MG1655, is deficient in both the pgi gene and the udhA gene and cannot grow on glucose as carbon and energy source. This strain was transformed with different pET-plasmids containing archaeal or bacterial pgi, cpgi or pgi/pmi genes from the three known PGI families (PGI, PGI/PMI, cPGI). Growth could be restored upon plasmid-based expression of pgi, pgi/pmi or cpgi genes indicating that these heterologous proteins can substitute for E. coli PGI. However, complete restoration of the growth rate could not be obtained by any of the PGIs, PGI/PMIs, or cPGIs used. The data indicate that the PGI function of the three PGI families is functionally exchangeable in glycolysis.
    Type of Medium: Electronic Resource
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  • 7
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    PANGAEA
    In:  Supplement to: Garzke, Jessica; Hansen, Thomas; Ismar, Stefanie M; Sommer, Ulrich; Ross, Pauline M (2016): Combined Effects of Ocean Warming and Acidification on Copepod Abundance, Body Size and Fatty Acid Content. PLoS ONE, 11(5), e0155952, https://doi.org/10.1371/journal.pone.0155952
    Publication Date: 2023-04-24
    Description: Concerns about increasing atmospheric CO2 concentrations and global warming have initiated studies on the consequences of multiple-stressor interactions on marine organisms and ecosystems. We present a fully-crossed factorial mesocosm study and assess how warming and acidification affect the abundance, body size, and fatty acid composition of copepods as a measure of nutritional quality. The experimental set-up allowed us to determine whether the effects of warming and acidification act additively, synergistically, or antagonistically on the abundance, body size, and fatty acid content of copepods, a major group of lower level consumers in marine food webs. Copepodite (developmental stages 1-5) and nauplii abundance were antagonistically affected by warming and acidification. Higher temperature decreased copepodite and nauplii abundance, while acidification partially compensated for the temperature effect. The abundance of adult copepods was negatively affected by warming. The prosome length of copepods was significantly reduced by warming, and the interaction of warming and CO2 antagonistically affected prosome length. Fatty acid composition was also significantly affected by warming. The content of saturated fatty acids increased, and the ratios of the polyunsaturated essential fatty acids docosahexaenoic- (DHA) and arachidonic acid (ARA) to total fatty acid content increased with higher temperatures. Additionally, here was a significant additive interaction effect of both parameters on arachidonic acid. Our results indicate that in a future ocean scenario, acidification might partially counteract some observed effects of increased temperature on zooplankton, while adding to others. These may be results of a fertilizing effect on phytoplankton as a copepod food source. In summary, copepod populations will be more strongly affected by warming rather than by acidifying oceans, but ocean acidification effects can modify some temperature impacts
    Keywords: BIOACID; Biological Impacts of Ocean Acidification
    Type: Dataset
    Format: application/zip, 4 datasets
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  • 8
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    PANGAEA
    In:  Supplement to: Hauss, Helena; Franz, Jasmin; Hansen, Thomas; Struck, Ulrich; Sommer, Ulrich (2013): Relative inputs of upwelled and atmospheric nitrogen to the eastern tropical North Atlantic food web: Spatial distribution of d15N in mesozooplankton and relation to dissolved nutrient dynamics. Deep Sea Research Part I: Oceanographic Research Papers, 75, 135-145, https://doi.org/10.1016/j.dsr.2013.01.010
    Publication Date: 2023-10-28
    Description: Oxygen-deficient waters in the ocean, generally referred to as oxygen minimum zones (OMZ), are expected to expand as a consequence of global climate change. Poor oxygenation is promoting microbial loss of inorganic nitrogen (N) and increasing release of sediment-bound phosphate (P) into the water column. These intermediate water masses, nutrient-loaded but with an N deficit relative to the canonical N:P Redfield ratio of 16:1, are transported via coastal upwelling into the euphotic zone. To test the impact of nutrient supply and nutrient stoichiometry on production, partitioning and elemental composition of dissolved (DOC, DON, DOP) and particulate (POC, PON, POP) organic matter, three nutrient enrichment experiments were conducted with natural microbial communities in shipboard mesocosms, during research cruises in the tropical waters of the southeast Pacific and the northeast Atlantic. Maximum accumulation of POC and PON was observed under high N supply conditions, indicating that primary production was controlled by N availability. The stoichiometry of microbial biomass was unaffected by nutrient N:P supply during exponential growth under nutrient saturation, while it was highly variable under conditions of nutrient limitation and closely correlated to the N:P supply ratio, although PON:POP of accumulated biomass generally exceeded the supply ratio. Microbial N:P composition was constrained by a general lower limit of 5:1. Channelling of assimilated P into DOP appears to be the mechanism responsible for the consistent offset of cellular stoichiometry relative to inorganic nutrient supply and nutrient drawdown, as DOP build-up was observed to intensify under decreasing N:P supply. Low nutrient N:P conditions in coastal upwelling areas overlying O2-deficient waters seem to represent a net source for DOP, which may stimulate growth of diazotrophic phytoplankton. These results demonstrate that microbial nutrient assimilation and partitioning of organic matter between the particulate and the dissolved phase are controlled by the N:P ratio of upwelled nutrients, implying substantial consequences for nutrient cycling and organic matter pools in the course of decreasing nutrient N:P stoichiometry.
    Keywords: Climate - Biogeochemistry Interactions in the Tropical Ocean; SFB754
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 9
    Publication Date: 2024-03-08
    Description: Data represent isotopic values of plankton community of the eastern tropical Atlantic. Main focus was given to the trophic position of gelatinous zooplankton within the oceanic food web. Sampling was conducted during November and December 2015 on board R/V “MARIA S. MERIAN” (cruise MSM49) at 8 stations in Cape Verdean waters in the ETA, including a shallow seamount (Senghor Seamount, 100-3300 m) and its northwestern and southeastern slopes, a cyclonic eddy, and four oceanic stations. Net sampling was conducted using two types of multiple opening/closing nets and environmental sampling systems (MOCNESS), one with 1 m2 ( three nets, mesh size: 2 mm; and six nets, mesh size: 335 µm) and one with 10 m2 opening (five nets, mesh size: 1.5 mm), towed at a speed of 2 kn. Sampling depth intervals were targeted at 0-50, 50-100, 100-200, 200-400, 400-600, and 600-1000 m. Samples from replicate tows at the same depth and station were pooled for analyses.
    Keywords: Carbon/Nitrogen ratio; DEPTH, water; Depth comment; Event label; Group; Maria S. Merian; MSM49; MSM49_585; MSM49_587; MSM49_588; MSM49_595; MSM49_601; MSM49_602; MSM49_603; MSM49_604; MULT; Multiple investigations; S03_Senghor Ref; S04_Senghor NW; S05_Senghor Summit; S06_Senghor SE; S07_Eddy; S08_CVSE; S09_CVS1; S10_CVS2; Size; Species; Station label; Taxa; δ13C; δ15N
    Type: Dataset
    Format: text/tab-separated-values, 7193 data points
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  • 10
    Publication Date: 2024-06-10
    Keywords: Climate - Biogeochemistry Interactions in the Tropical Ocean; Date/Time of event; Deoxyribonucleic acid; Dry mass; Event label; GO-FLO 5; Individuals; Latitude of event; Longitude of event; M83/1; M83/1_773; M83/1_780; M83/1_786; M83/1_796; M83/1_799; M83/1_805; M83/1_815; M83/1_824; M83/1_830; M83/1_838; M83/1_846; M83/1_853; M83/1_859; M83/1_865; M83/1_871; M83/1_877; M83/1_883; M83/1_891; M83/1_896; M83/1_903; M83/1_908; M83/1_913; M83/1_921; M83/1_929; M83/1_935; Meteor (1986); Profile ID; Ribonucleic acid; SFB754; Species; WP2; WP-2 Plankton Net 1; WP-2 Plankton Net 10; WP-2 Plankton Net 11; WP-2 Plankton Net 12; WP-2 Plankton Net 13; WP-2 Plankton Net 14; WP-2 Plankton Net 15; WP-2 Plankton Net 16; WP-2 Plankton Net 17; WP-2 Plankton Net 18; WP-2 Plankton Net 19; WP-2 Plankton Net 2; WP-2 Plankton Net 20; WP-2 Plankton Net 21; WP-2 Plankton Net 22; WP-2 Plankton Net 23; WP-2 Plankton Net 3; WP-2 Plankton Net 4; WP-2 Plankton Net 5; WP-2 Plankton Net 6; WP-2 Plankton Net 7; WP-2 Plankton Net 8; WP-2 Plankton Net 9; WP-2 towed closing plankton net
    Type: Dataset
    Format: text/tab-separated-values, 1800 data points
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