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  • 1
    Publication Date: 2014-05-05
    Description: Correlating metal to calcium (Me/Ca) ratios of marine biogenic carbonates, such as bivalve shells, to environmental parameters has led to contradictory results. Biogenic carbonates represent complex composites of organic and inorganic phases. Some elements are incorporated preferentially into organic phases, and others are incorporated into inorganic phases. Chemical sample pretreatment to remove the organic matrix prior to trace element analysis may increase the applicability of the investigated proxy relationship, though its efficiency and side effects remain questionable. We treated inorganic calcium carbonate and bivalve shell powder (Arctica islandica) with eight different chemical treatments including H2O2, NaOH, NaOCl, and acetone and analyzed the effects on (1) Me/Ca ratios (Sr/Ca, Mg/Ca, Ba/Ca, and Mn/Ca), (2) organic matter (≈N) content, and (3) mineralogical composition of the calcium carbonate. The different treatments (1) cause element and treatment specific changes of Me/Ca ratios, (2) vary in their efficiency to remove organic matter, and (3) can even alter the phase composition of the calcium carbonate (e.g., formation of Ca(OH)2 during NaOH treatment). Among all examined treatments there were none without any side effects. In addition, certain Me/Ca changes we observed upon chemical treatment contradict our expectations that lattice-bound elements (Sr and Ba) should not be affected, whereas non-lattice-bound elements (Mg and Mn) should decrease upon removal of the organic matrix. For instance, we observe that NaOCl treatment did not alter Sr/Ca ratios but caused unexpected changes of the Mg/Ca ratios. The latter demonstrates that the buildup of complex biogenic composites like the shell of Arctica islandica are still poorly understood.
    Type: Article , PeerReviewed
    Format: text
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  • 2
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    Inter-Research
    In:  EPIC3Marine Ecology Progress Series, Inter-Research, 632, pp. 27-42, ISSN: 0171-8630
    Publication Date: 2020-01-10
    Description: This study shows that macrofaunal irrigation traits constitute a valuable complement to sediment reworking traits in estimating macrofaunal impact on nutrient fluxes across the sediment-water interface. We correlated density, biomass, community bioturbation potential (BPc, an index based on reworking traits, body mass and density) and community irrigation potential (IPc, an index based on irrigation traits, body mass and density) with nitrite, nitrate, ammonium, silicate and phosphate flux data under different environmental conditions. Generalized linear models performed best with a combination of environmental conditions and irrigation trait-based indices. This was not only a direct effect of the irrigation traits, but also of the scaling factor 0.75 employed in IPc to infer metabolic activity from body mass. Accordingly, predictive models of nutrient flux across the sediment-water interface will profit greatly from incorporating macrofaunal irrigation behaviour by means of trait-based indices.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 3
    Publication Date: 2019-07-16
    Description: We compared primary production and respiration of temperate (Helgoland, North Sea) and subtidal Arctic (Kongsfjorden, Svalbard) microphytobenthic communities during summer. The diatom communities were generally characterized as cosmopolitan, displayed no site specificity, and had similar chl a and fucoxanthin concentrations. Their net and gross photosynthesis rates and light adaptation intensities, derived from laboratory microsensor measurements, were also similar, despite differences in water temperature. Daily oxygen fluxes across the sediment− water interface were estimated by combining laboratory microprofile and planar optode measurements with in situ data on oxygen penetration and light dynamics. During the study period, the Svalbard sediments were on average net heterotrophic,while the Helgoland sediments were net autotrophic (−22.4 vs. 9.2 mmol O2 m−2 d−1). This was due to high infaunal abundance in the Svalbard sediments that caused high oxygen uptake rates in the sediments and consumption below the sediment euphotic zone. Additionally, bioirrigation of the sediment due to infaunal burrow ventilation was reduced by light; thus, the sedimentary oxygen inventory was reduced with increasing light. Conversely, light-enhanced the oxygen inventory in the Helgoland sediments. Oxygen dynamics in the Svalbard sediments were therefore dominated by bioirrigation, whereas in the Helgoland sediments they were dominated by photosynthetic oxygen production.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 4
    Publication Date: 2022-11-07
    Description: The Collector's App is a platform-independent (macOS, Linux and Windows) software written in Python. The Collector's App allows biological data to be quality-checked and stored in CRITTERBASE, which is a science-driven PostgreSQL data warehouse for marine biota. For further data processing and statistical analyses or modelling purposes, the respective data can be queried directly via SQL from your CRITTERBASE data warehouse.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Software , notRev
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  • 5
    Publication Date: 2022-11-07
    Description: The following downloadable R scripts for calculating the repeated accessibility are available here: 1. "Download of daily sea ice raster" - The R script automatically downloads all GeoTiffs from IUP, University of Bremen, and saves them in the directory of your choice. 2. "Existing and missing data" - The R script uses the downloaded GeoTiffs to create a table showing for which days satellite images are available and for which days they are not. 3. "Information of GeoTiffs" - The R script extracts important metadata of the downloaded GeoTiffs such as geographical projection, spatial extent and maximum value. A metadata table is created. 4. "Repeated accessibility" - The R script performs the repeated accessibility calculation based on a selectable threshold of sea ice concentration.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Software , notRev
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