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  • 2010-2014  (224)
  • 2005-2009  (15)
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  • 1
    ISSN: 1365-2486
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geography
    Notes: Ecosystem processes are important determinants of the biogeochemistry of the ocean, and they can be profoundly affected by changes in climate. Ocean models currently express ecosystem processes through empirically derived parameterizations that tightly link key geochemical tracers to ocean physics. The explicit inclusion of ecosystem processes in models will permit ecological changes to be taken into account, and will allow us to address several important questions, including the causes of observed glacial–interglacial changes in atmospheric trace gases and aerosols, and how the oceanic uptake of CO2 is likely to change in the future. There is an urgent need to assess our mechanistic understanding of the environmental factors that exert control over marine ecosystems, and to represent their natural complexity based on theoretical understanding. We present a prototype design for a Dynamic Green Ocean Model (DGOM) based on the identification of (a) key plankton functional types that need to be simulated explicitly to capture important biogeochemical processes in the ocean; (b) key processes controlling the growth and mortality of these functional types and hence their interactions; and (c) sources of information necessary to parameterize each of these processes within a modeling framework. We also develop a strategy for model evaluation, based on simulation of both past and present mean state and variability, and identify potential sources of validation data for each. Finally, we present a DGOM-based strategy for addressing key questions in ocean biogeochemistry. This paper thus presents ongoing work in ocean biogeochemical modeling, which, it is hoped will motivate international collaborations to improve our understanding of the role of the ocean in the climate system.
    Type of Medium: Electronic Resource
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  • 2
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    In:  [Invited talk] In: Ocean Carbon and Biogeochemistry (OCB) Summer Workshop, 21.-24.07.2014, Woods Hole, USA .
    Publication Date: 2014-12-05
    Type: Conference or Workshop Item , NonPeerReviewed
    Format: text
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  • 3
    Publication Date: 2014-12-05
    Description: A number of state-of-the art biogeochemical floats featuring CTD, biooptical, oxygen, and/or nitrate sensors have been recently deployed in various regions of the Atlantic and Indian Ocean during the RemOcean project. In this presentation, we want to focus on the chemical data from five floats located in the North and South Atlantic subtropical gyres, for which a full seasonal cycle is available. Their data, especially O2 and NO3, are presented and analyzed using a 1-D model to estimate primary production as well as elemental budgets and fluxes for the productive layer in-situ and on seasonal scales. The same model is used to shed light on the observed approx. 50 m upward displacement of the sub-surface O2 maximum relative to the deep chlorophyll a maximum by analyzing source/sink terms required within the model to reproduce the observations. Finally, sequences of float profiles acquired within 24 hours at dawn, noon, dusk, and the next dawn were used to investigate diel variations, i.e., photosynthetic production vs. respiration signals over a full 24-hour cycle. To be able to distinguish these processes, thresholds to O2 data accuracy are presented and a recommendation for a extension of the standard Argo sampling scheme to provide such process information is made based on these results.
    Type: Conference or Workshop Item , NonPeerReviewed
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  • 4
    Publication Date: 2013-12-08
    Description: [1]  We analyze an original large data set of concurrent in situ measurements of fluorescence, temperature and salinity provided by sensors mounted on the elephant seals of Kerguelen Island. Our results were mainly gathered in regions of the Southern Ocean where the typical iron limitation is relieved by natural iron fertilization. Thus the role of light as the proximal factor of control of phytoplankton can be examined. We show that self-shading, and consequently stratification, are major factors controlling the integrated biomass during the bloom induced by iron fertilization. When the mixed layer was the shallowest, the maximum Chl ML achievable by the given light mixing regime was however not reached, most likely due to silicic acid limitation. We also show that a favourable light mixing regime prevails after the spring equinox and is maintained for roughly seven months (October-April).
    Print ISSN: 0094-8276
    Electronic ISSN: 1944-8007
    Topics: Geosciences , Physics
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  • 5
    Publication Date: 2022-05-25
    Description: © 2008 Author(s). This work is distributed under the Creative Commons Attribution License. The definitive version was published in Biogeosciences 5 (2008): 95-109, doi:10.5194/bg-5-95-2008
    Description: Due to the low atmospheric input of phosphate into the open ocean, it is one of the key nutrients that could ultimately control primary production and carbon export into the deep ocean. The observed trend over the last 20 years has shown a decrease in the dissolved inorganic phosphate (DIP) pool in the North Pacific gyre, which has been correlated to the increase in di-nitrogen (N2) fixation rates. Following a NW-SE transect, in the Southeast Pacific during the early austral summer (BIOSOPE cruise), we present data on DIP, dissolved organic phosphate (DOP) and particulate phosphate (PP) pools along with DIP turnover times (TDIP) and N2 fixation rates. We observed a decrease in DIP concentration from the edges to the centre of the gyre. Nevertheless the DIP concentrations remained above 100 nmol L−1 and T DIP was more than 6 months in the centre of the gyre; DIP availability remained largely above the level required for phosphate limitation to occur and the absence of Trichodesmium spp and low nitrogen fixation rates were likely to be controlled by other factors such as temperature or iron availability. This contrasts with recent observations in the North Pacific Ocean at the ALOHA station and in the western Pacific Ocean at the same latitude (DIAPALIS cruises) where lower DIP concentrations (〈20 nmol L−1) and T DIP 〈50 h were measured during the summer season in the upper layer. The South Pacific gyre can be considered a High Phosphate Low Chlorophyll (HPLC) oligotrophic area, which could potentially support high N2 fixation rates and possibly carbon dioxide sequestration, if the primary ecophysiological controls, temperature and/or iron availability, were alleviated.
    Description: This research was funded by the Centre National de la Recherche Scientifique (CNRS), the Institut des Sciences de l’Univers (INSU), the Centre National d’Etudes Spatiales (CNES), the European Space Agency (ESA), The National Aeronautics and Space Administration (NASA) and the Natural Sciences and Engineering Research Council of Canada (NSERC). This work is funded in part by the French Research and Education council.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 6
    Publication Date: 2022-05-26
    Description: © 2007 Author(s) et al. This is an open-access article distributed under the terms of a Creative Commons License. The definitive version was published in Biogeosciences 4 (2007): 941-956, doi:10.5194/bg-4-941-2007
    Description: Predicting heterotrophic bacteria and phytoplankton specific growth rates (μ) is of great scientific interest. Many methods have been developed in order to assess bacterial or phytoplankton μ. One widely used method is to estimate μ from data obtained on biomass or cell abundance and rates of biomass or cell production. According to Kirchman (2002), the most appropriate approach for estimating μ is simply to divide the production rate by the biomass or cell abundance estimate. Most methods using this approach to estimate μ are based on carbon (C) incorporation rates and C biomass measurements. Nevertheless it is also possible to estimate μ using phosphate (P) data. We showed that particulate phosphate (PartP) can be used to estimate biomass and that the P uptake rate to PartP ratio can be employed to assess μ. Contrary to other methods using C, this estimator does not need conversion factors and provides an evaluation of μ for both autotrophic and heterotrophic organisms. We report values of P-based μ in three size fractions (0.2–0.6; 0.6–2 and 〉2 μm) along a Southeast Pacific transect, over a wide range of P-replete trophic status. P-based μ values were higher in the 0.6–2 μm fraction than in the 〉2 μm fraction, suggesting that picoplankton-sized cells grew faster than the larger cells, whatever the trophic regime encountered. Picoplankton-sized cells grew significantly faster in the deep chlorophyll maximum layer than in the upper part of the photic zone in the oligotrophic gyre area, suggesting that picoplankton might outcompete 〉2 μm cells in this particular high-nutrient, low-light environment. P-based μ attributed to free-living bacteria (0.2-0.6 μm) and picoplankton (0.6–2 μm) size-fractions were relatively low (0.11±0.07 d−1 and 0.14±0.04 d−1, respectively) in the Southeast Pacific gyre, suggesting that the microbial community turns over very slowly.
    Description: This research was funded by the Centre National de la Recherche Scientifique (CNRS), the Institut des Sciences de l’Univers (INSU), the Centre National d’Etudes Spatiales (CNES), the European Space Agency (ESA), The National Aeronautics and Space Administration (NASA) and the Natural Sciences and Engineering Research Council of Canada (NSERC). This work is funded in part by the French Research and Education council.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 7
    Publication Date: 2023-01-13
    Description: Phytoplankton photosynthetic pigment concentrations from various expeditions, analysed by HPLC by the Laboratoire d'Oceanographie de Villefranche (LOV).
    Type: Dataset
    Format: application/zip, 42 datasets
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  • 8
    Publication Date: 2023-02-12
    Keywords: BIOSOPE_EGY; BIOSOPE_HLNC; BIOSOPE04-11-03; BIOSOPE04-11-04; BIOSOPE04-11-06; BIOSOPE04-11-08; BIOSOPE04-11-12; BIOSOPE04-11-21; BIOSOPE04-11-23; BIOSOPE04-11-24; BIOSOPE2004-11-05; BIOSOPE2004-11-09; BIOSOPE2004-11-22; Calculated after Luo et al. (2012); Calothrix, abundance expressed in number of nifH gene copies; Calothrix, associated species; Calothrix, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Diazotrophs, total biomass as carbon; Event label; Fluorescence-based quantitative real-time PCR (qPCR); Heterocyst, biomass; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Mooring (long time); MOORY; South Pacific; Trichodesmium, abundance expressed in number of nifH gene copies; Trichodesmium, biomass as carbon; Trichodesmium abundance, total; Unicellular cyanobacteria, biomass; Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies
    Type: Dataset
    Format: text/tab-separated-values, 156 data points
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  • 9
    Publication Date: 2024-02-01
    Keywords: Biogeochemical Processes in the Oceans and Fluxes; Carbon dioxide, partial pressure; Chlorophyll a; CT; DATE/TIME; Density, sigma-theta (0); DEPTH, water; JGOFS; Joint Global Ocean Flux Study; LATITUDE; LONGITUDE; Mediterranean Sea; PROOF; PROSOPE; PROSOPE_surface; Salinity; Temperature, water; Thalassa; Underway cruise track measurements
    Type: Dataset
    Format: text/tab-separated-values, 185546 data points
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  • 10
    Publication Date: 2024-02-01
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; alpha-Carotene, beta,epsilon-Carotene; beta-Carotene, beta,beta-Carotene; Biogeochemical Processes in the Oceans and Fluxes; bsn003; bsn006; bsn010; bsn015; bsn020; bsn024; bsn030; bsn036; bsn039; bsn047; bsn049; bsn051; bsn055; bsn060; bsn066; bsn067; bsn072; bsn105; bsn114; bsn115; Canarias Sea; Chlorophyll a; Chlorophyll b; Chlorophyll c1+c2; Chlorophyll c3; Chlorophyllide; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Diadinoxanthin; Diatoxanthin; Divinyl chlorophyll a; EU3_M1.02C; EU3_M1.03B; EU3_M2.01B; EU3_M2.08; EU3_M2.16; EU3_M2.23; EU3_M2.26A; EU3_O1.01D; EU3_O1.03C; EU3_O2.01A; EU3_O2.05; EU3_O2.14; EU3_O2.21B; EU3_O2.21C; EU3_O2.27; EU3_O2.60A; EU3_O2.65A; EU3_O2.65B; EU3_T1A; EU3_T2A; EUMELI3; Event label; Fucoxanthin; High Performance Liquid Chromatography (HPLC); JGOFS; Joint Global Ocean Flux Study; L Atalante; Latitude of event; Longitude of event; Peridinin; Phaeopigments; PROOF; South Atlantic Ocean; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 4255 data points
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