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  • 1
    Online Resource
    Online Resource
    Cham : Springer International Publishing | Cham : Imprint: Springer
    Keywords: Marine sciences. ; Freshwater. ; Geobiology. ; Microbiology. ; Aquatic ecology .
    Description / Table of Contents: Chapter1: Nitrogen Fixation in the Marine Environment -- Chapter2: Fundamentals of N2 Fixation -- Chapter3: History of Research on Marine N2 Fixation -- Chapter4: Microorganisms and Habitats -- Chapter5: Measurements of Organism Abundances and Activities -- Chapter6: Factors Controlling N2 Fixation -- Chapter7: Biogeography of N2 Fixation in the Surface Ocean -- Chapter8: N2 Fixation in Ocean Basins -- Chapter9: Marine N2 Fixation, Global Change and the Future -- Chapter10: Summary and Conclusions.
    Type of Medium: Online Resource
    Pages: 1 Online-Ressource(XV, 186 p. 36 illus., 31 illus. in color.)
    Edition: 1st ed. 2021.
    ISBN: 9783030677466
    Language: English
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  • 2
    Book
    Book
    Cham : Springer
    Type of Medium: Book
    Pages: xv, 186 Seiten , Illustrationen, Diagramme
    ISBN: 9783030677459
    Language: English
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  • 3
    Online Resource
    Online Resource
    Cham :Springer International Publishing AG,
    Keywords: Nitrogen-Fixation. ; Electronic books.
    Type of Medium: Online Resource
    Pages: 1 online resource (191 pages)
    Edition: 1st ed.
    ISBN: 9783030677466
    DDC: 551.466
    Language: English
    Note: Intro -- Foreword -- References -- Preface -- Acknowledgments -- Contents -- Chapter 1: Nitrogen Fixation in the Marine Environment -- 1.1 The Nitrogen Cycle -- 1.2 Terrestrial and Aquatic Environments -- References -- Chapter 2: Fundamentals of N2 Fixation -- 2.1 Microbiology -- 2.2 Nitrogen Fixation Reaction and Nitrogenases -- 2.3 The Biological Nitrogen Fixation Reaction -- 2.4 Non-structural nif Genes and Protein Assembly -- 2.5 Cellular Regulation of Nitrogenase -- 2.6 Conclusions -- References -- Chapter 3: History of Research on Marine N2 Fixation -- 3.1 History of Studies of Marine N2 Fixation -- 3.2 Process Oriented Studies: Water Column -- 3.3 Benthic Marine Environments -- 3.4 Concluding Remarks -- References -- Chapter 4: Microorganisms and Habitats -- 4.1 The Surface Ocean (Pelagic) -- Cyanobacteria -- Heterotrophic N2 Fixers -- 4.2 Oxygen Deficient Zones (ODZs) -- 4.3 Mesopelagic and Deep Ocean -- 4.4 The Benthos -- Microbial Mats -- Shallow Sediments -- Corals and Coral Reefs -- Marine Plant Communities -- Deep Sea Benthos -- 4.5 Conclusions -- References -- Chapter 5: Measurements of Organism Abundances and Activities -- 5.1 Introduction -- 5.2 Cultivation -- 5.3 The Acetylene Reduction Method -- 5.4 Isotopic Tracers: 15N -- 5.5 Hydrogen -- 5.6 Functional Gene Analysis -- 5.7 Stable Isotope Probing -- 5.8 Biogeochemical Proxies -- 5.9 Remote Sensing -- 5.10 Experimental and Observational Formats and Scales -- 5.11 Mathematical Models -- 5.12 Conclusions -- References -- Chapter 6: Factors Controlling N2 Fixation -- 6.1 Oxygen -- 6.2 Light -- 6.3 Temperature -- 6.4 Nutrients -- 6.5 Dissolved Organic Matter -- 6.6 Salinity -- 6.7 pH -- 6.8 Turbulence -- 6.9 Fate of Diazotrophs -- 6.10 Conclusions -- References -- Chapter 7: Biogeography of N2 Fixation in the Surface Ocean. , 7.1 Factors Controlling the Distribution of N2 Fixation Biogeography -- 7.2 Nutrient Limitation Geography -- 7.3 N2 Fixation Variables -- 7.4 Oligotrophic Oceans -- 7.5 Coastal and Upwelling Regions -- 7.6 Seasonality -- 7.7 Low O2 Waters -- 7.8 Estuaries and Inland Seas -- 7.9 High Latitudes Including the Arctic -- 7.10 Conclusions -- References -- Chapter 8: N2 Fixation in Ocean Basins -- 8.1 Nutrient Relationships, Ratios and N Cycle Feedbacks -- Stable Isotope Inferences -- The N* Parameter and N2 Fixation -- 8.2 Basin and Global Scale Inputs -- Pelagic Studies -- Heterotrophic N2 Fixation Inputs -- Benthic Studies -- 8.3 Conclusions -- References -- Chapter 9: Marine N2 Fixation, Global Change and the Future -- 9.1 Effects of Environmental Changes on Species -- 9.2 Large-Scale Shifts in N2 Fixation in the Global Ocean -- 9.3 Ocean Fertilization and Marine N2 Fixation -- 9.4 Marine Aquaculture, Biotechnology and N2 Fixation -- 9.5 Overcoming Challenges for Future N2 Fixation Research -- 9.6 Conclusions -- References -- Chapter 10: Summary and Conclusions -- 10.1 Introduction -- 10.2 Fundamentals -- 10.3 History -- 10.4 Microorganisms -- 10.5 Measurements -- 10.6 Factors -- 10.7 Biogeography -- 10.8 N2 Fixation in Ocean Basins -- 10.9 Marine N2 Fixation, Global Change and the Future -- 10.10 Over-Arching Questions, Controversies and Future Directions -- Microbiological -- Physiological -- Ecological/Biogeochemical -- Methodological/Technological -- 10.11 Closing Comments -- Index.
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  • 4
    Publication Date: 2024-02-07
    Description: Complex assemblages of microbes in the surface ocean are responsible for approximately half of global carbon fixation. The persistence of high taxonomic diversity despite competition for a small suite of relatively homogeneously distributed nutrients, that is, 'the paradox of the plankton', represents a long-standing challenge for ecological theory. Here we find evidence consistent with temporal niche partitioning of nitrogen assimilation processes over a diel cycle in the North Pacific Subtropical Gyre. We jointly analysed transcript abundances, lipids and metabolites and discovered that a small number of diel archetypes can explain pervasive periodic dynamics. Metabolic pathway analysis of identified diel signals revealed asynchronous timing in the transcription of nitrogen uptake and assimilation genes among different microbial groups-cyanobacteria, heterotrophic bacteria and eukaryotes. This temporal niche partitioning of nitrogen uptake emerged despite synchronous transcription of photosynthesis and central carbon metabolism genes and associated macromolecular abundances. Temporal niche partitioning may be a mechanism by which microorganisms in the open ocean mitigate competition for scarce resources, supporting community coexistence.
    Type: Article , PeerReviewed
    Format: text
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  • 5
    Publication Date: 2024-02-07
    Description: Marine diazotrophs convert dinitrogen (N-2) gas into bioavailable nitrogen (N), supporting life in the global ocean. In 2012, the first version of the global oceanic diazotroph database (version 1) was published. Here, we present an updated version of the database (version 2), significantly increasing the number of in situ diazotrophic measurements from 13 565 to 55 286. Data points for N-2 fixation rates, diazotrophic cell abundance, and nifH gene copy abundance have increased by 184 %, 86 %, and 809 %, respectively. Version 2 includes two new data sheets for the nifH gene copy abundance of non-cyanobacterial diazotrophs and cell-specific N2 fixation rates. The measurements of N-2 fixation rates approximately follow a log-normal distribution in both version 1 and version 2. However, version 2 considerably extends both the left and right tails of the distribution. Consequently, when estimating global oceanic N-2 fixation rates using the geometric means of different ocean basins, version 1 and version 2 yield similar rates (43-57 versus 45-63 TgNyr (-1); ranges based on one geometric standard error). In contrast, when using arithmetic means, version 2 suggests a significantly higher rate of 223 +/- 30 TgNyr (-1) (mean +/- standard error; same hereafter) compared to version 1 (74 +/- 7 TgNyr (-1)). Specifically, substantial rate increases are estimated for the South Pacific Ocean (88 +/- 23 versus 20 +/- 2 TgNyr 1), primarily driven by measurements in the southwestern subtropics, and for the North Atlantic Ocean (40 +/- 9 versus 10 +/- 2 TgNyr (-1)). Moreover, version 2 estimates the N-2 fixation rate in the Indian Ocean to be 35 +/- 14 TgNyr (-1), which could not be estimated using version 1 due to limited data availability. Furthermore, a comparison of N-2 fixation rates obtained through different measurement methods at the same months, locations, and depths reveals that the conventional N-15(2) bubble method yields lower rates in 69% cases compared to the new N-15(2) dissolution method. This updated version of the database can facilitate future studies in marine ecology and biogeochemistry. The database is stored at the Figshare repository (https://doi.org/10.6084/m9.figshare.21677687; Shao et al., 2022).
    Type: Article , PeerReviewed
    Format: text
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