Description: Society’s needs for a network of in situ ocean observing systems cross many areas of earth and marine science. Here we review the science themes that benefit from data supplied from ocean observatories. Understanding from existing studies is fragmented to the extent that it lacks the coherent long-term monitoring needed to address questions at the scales essential to understand climate change and improve geo-hazard early warning. Data sets from the deep sea are particularly rare with long-term data available from only a few locations worldwide. These science areas have impacts on societal health and well-being and our awareness of ocean function in a shifting climate. Substantial efforts are underway to realise a network of open-ocean observatories around European Seas that will operate over multiple decades. Some systems are already collecting high-resolution data from surface, water column, seafloor, and sub-seafloor sensors linked to shore by satellite or cable connection in real or near-real time, along with samples and other data collected in a delayed mode. We expect that such observatories will contribute to answering major ocean science questions including: How can monitoring of factors such as seismic activity, pore fluid chemistry and pressure, and gas hydrate stability improve seismic, slope failure, and tsunami warning? What aspects of physical oceanography, biogeochemical cycling, and ecosystems will be most sensitive to climatic and anthropogenic change? What are natural versus anthropogenic changes? Most fundamentally, how are marine processes that occur at differing scales related? The development of ocean observatories provides a substantial opportunity for ocean science to evolve in Europe. Here we also describe some basic attributes of network design. Observatory networks provide the means to coordinate and integrate the collection of standardised data capable of bridging measurement scales across a dispersed area in European Seas adding needed certainty to estimates of future oceanic conditions. Observatory data can be analysed along with other data such as those from satellites, drifting floats, autonomous underwater vehicles, model analysis, and the known distribution and abundances of marine fauna in order to address some of the questions posed above. Standardised methods for information management are also becoming established to ensure better accessibility and traceability of these data sets and ultimately to increase their use for societal benefit. The connection of ocean observatory effort into larger frameworks including the Global Earth Observation System of Systems (GEOSS) and the Global Monitoring of Environment and Security (GMES) is integral to its success. It is in a greater integrated framework that the full potential of the component systems will be realised. Highlights ► Societies increasingly depend on timely information on ecosystems and natural hazards. ► Data is needed to improve climate-related uncertainty and geo-hazard early warning. ► Observatory networks coordinate and integrate the collection of standardised data. ► Ocean observatories provide opportunity for ocean science to evolve.

Description: Seamounts are abundant and prominent features on the deep-sea floor and intersperse with the nodule fields of the Clarion-Clipperton Fracture Zone (CCZ). There is a particular interest in characterising the fauna inhabiting seamounts in the CCZ because they are the only other ecosystem in the region to provide hard substrata besides the abundant nodules on the soft-sediment abyssal plains. It has been hypothesised that seamounts could provide refuge for organisms during deep-sea mining actions or that they could play a role in the (re-)colonisation of the disturbed nodule fields. This hypothesis is tested by analysing video transects in both ecosystems, assessing megafauna composition and abundance. Nine video transects (ROV dives) from two different license areas and one Area of Particular Environmental Interest in the eastern CCZ were analysed. Four of these transects were carried out as exploratory dives on four different seamounts in order to gain first insights into megafauna composition. The five other dives were carried out in the neighbouring nodule fields in the same areas. Variation in community composition observed among and along the video transects was high, with little morphospecies overlap along intra-ecosystem transects. Despite the observation of considerable faunal variations within each ecosystem, differences between seamounts and nodule fields prevailed, showing significantly different species associations characterising them, thus calling into question their use as a possible refuge area.

Description: Ocean manipulation to mitigate climate change may harm deep-sea ecosystems

Description: In the deep ocean symbioses between microbes and invertebrates are emerging as key drivers of ecosystem health and services. We present a large-scale analysis of microbial diversity in deep-sea sponges (Porifera) from scales of sponge individuals to ocean basins, covering 52 locations, 1077 host individuals translating into 169 sponge species (including understudied glass sponges), and 469 reference samples, collected anew during 21 ship-based expeditions. We demonstrate the impacts of the sponge microbial abundance status, geographic distance, sponge phylogeny, and the physical-biogeochemical environment as drivers of microbiome composition, in descending order of relevance. Our study further discloses that fundamental concepts of sponge microbiology apply robustly to sponges from the deep-sea across distances of 〉10,000 km. Deep-sea sponge microbiomes are less complex, yet more heterogeneous, than their shallow-water counterparts. Our analysis underscores the uniqueness of each deep-sea sponge ground based on which we provide critical knowledge for conservation of these vulnerable ecosystems.

Description: Highlights • Probeebei mirabilis with or without anemone as indicator of changed environment. • 26 years after disturbance population densities changed significantly. • Possible delayed response to anthropogenic disturbance experiment. • Need for long-term (〉30 yrs) monitoring surveys post-disturbance in the abyss. The deep Peru Basin is characterised by a unique abyssal scavenging community featuring large numbers of hermit crabs (Probeebei mirabilis, Decapoda, Crustacea). These are atypical hermit crabs, not carrying a shell, but on some occasions carrying an anemone (Actiniaria). The reason why some hermit crabs carry or not carry anemones is thought to be indicative of a changed environment, outweighing the cost/benefit of their relationship. Here we present the temporal variation of abundances of P. mirabilis with and without anemones, spanning more than two decades, following a benthic impact experiment. An overall decrease in hermit crab densities was observed, most noticeable and significant after 26 years and characterised by a loss of Actiniaria on the Probeebei mirabilis' pleon. Whether this is a delayed response to the benthic impact experiment carried out 26 years’ prior or a natural variation in the population remains to be corroborated by an extension of the time-series. Attention is drawn to the limitations of our knowledge over time and space of the abyssal community dynamics and the urgent necessity to fill in these gaps prior to any type of deep-sea exploitation.

Description: Records of distribution of deep-sea lithistids (Porifera, Heteroscleromorpha) of the Azores archipelago

Description: In 2014, two experimental Agassiz trawls were conducted on the Schulz Bank; one at the summit (568–670 m depth) and one on the southwestern flank (1,464 m depth). The 3-m-wide Agassiz trawl, with a 1 cm mesh size in the cod-end, was towed along the seafloor for 676 m on the summit and 441 m on the flank, resulting in a disturbed area of 2,028 and 1,323 m2, for the summit and flank, respectively. Towing speed was maintained at around 2 knots and the initial and final position were recorded. In August 2018, the two trawl marks and four additional control transects (one on either side of the trawl mark) were surveyed while onboard the R/V G.O.Sars. Video recordings were taken along the trawl marks and control transects with the ROV AEGIR6000. Control transects were located 50 m to the east and west of each trawl mark and were performed parallel to the mark.

Description: In 2014, two experimental Agassiz trawls were conducted on the Schulz Bank; one at the summit (568–670 m depth) and one on the southwestern flank (1,464 m depth). The 3-m-wide Agassiz trawl, with a 1 cm mesh size in the cod-end, was towed along the seafloor for 676 m on the summit and 441 m on the flank, resulting in a disturbed area of 2,028 and 1,323 m², for the summit and flank, respectively. Towing speed was maintained at around 2 knots and the initial and final position were recorded. In August 2018, the two trawl marks and four additional control transects (one on either side of the trawl mark) were surveyed while onboard the R/V G.O.Sars. Video recordings were taken along the trawl marks and control transects with the ROV AEGIR6000. Control transects were located 50 m to the east and west of each trawl mark and were performed parallel to the mark.

Description: This database contains functional traits of target and non-target fish species (Actinopterygii and Elasmobranchii) from the Azores archipelago, Portugal. The included traits are reproductive guilds, body shape, position in water column, mean temperature preference (ᵒC), generation time (years), maximum depth (m), trophic position, growth coefficient (K), size at first maturity (cm), food consumption (Q/B), fecundity, and maximum body size (cm). The traits scores were assigned based on databases provided by FishBase (Froese and Pauly, 2023), and Trindade-Santos et al. (2020). Additionally, relevant literature was also utilized. These traits were selected based on biological and ecological knowledge of species critical for ecological processes in marine ecosystems, as well as data availability. The selected traits are associated with fish functions including habitat use, locomotion, feeding, and life history.

Description: Mesopelagic organisms play a critical role in marine ecosystems, channelling energy and organic matter across food webs and serving as the primary prey for many open-ocean predators. Nevertheless, trophic pathways involving mesopelagic organisms are poorly understood and their contribution to food web structure remains difficult to assess (St. John et al., 2016). Existing data to assess mesopelagic feeding interactions and energy transfer are scattered in the literature or remain unpublished, making it difficult to locate and use such datasets. As part of the EU funded project SUMMER - Sustainable Management of Mesopelagic Resources H2020-BG-2018-2, GA: 817806) (https://summerh2020.eu/), we created MesopTroph, a georeferenced database of diet, trophic biogeochemical markers, and energy content of mesopelagic organisms and other marine taxa from the Northeast Atlantic and Mediterranean Sea, compiled from 191 published and non-published sources. MesopTroph includes seven datasets: (i) diet compositions from stomach content analysis, (ii) stable isotopes of carbon and nitrogen (δ13C and δ15N), (iii) fatty acid trophic markers (FATM), (iv) major and trace elements, (v) energy density, (vi) estimates of diet proportions, and (vii) trophic positions. The database contains information from 4918 samples, representing 51119 specimens from 499 species or genera, covering a wide range of trophic guilds and taxonomic groups. Metadata provided for each record include the location, dates and method of sample collection, taxonomic ranks (phylum, class, order, family), number and size (or size range) of sampled organisms, method/model used in data analysis, reference and DOI of the original data source. Compiled data were checked for errors, missing information, and to avoid duplicate entries, and scientific names and taxonomy were standardized.