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  • 1
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    The Climatic Response of Tree Ring Width Components of Ash (Fraxinus excelsior L.) and Common Oak (Quercus robur L.) from Eastern Europe (2020)
    MDPI
    In:  EPIC3Forests, MDPI, 11(5), ISSN: 1999-4907
    Details
    Publication Date: 2020-08-10
    Description: This paper aims to develop the first differentiated (earlywood—EW, latewood—LW, and total ring width—RW) dendrochronological series for ash (Fraxinus excelsior L.) and oak (Quercus robur L.) trees from the Republic of Moldova, and to analyze their climatic response and their spatio-temporal stability. For this, 18 ash and 26 oak trees were cored from the DobruÈ�a protected area, Republic of Moldova, Eastern Europe, and new EW, LW, and RW chronologies were developed for ash and oak covering the last century. The obtained results showed that the RW and LW have a similar climatic response for both species, while EW is capturing interannual climate variations and has a different reaction. The analyses performed with monthly climatic data revealed a significant and negative correlation with the mean air temperature and a significant and positive correlation with precipitation and the Standardized Precipitation-Evapotranspiration Index (SPEI) for both ash and oak. The temperature during the vegetation period has a strong influence on all tree-ring components of ash, while for oak the strong correlation was found only for LW. The positive and significant correlation between LW and RW with precipitation for both species, suggests that ash and oak are sensitive to the hydrological component and the precipitation is the main tree growth-limiting factor. Despite the significant correlation with precipitation and temperature for the whole analyzed period, the 25-year moving correlation analyses show that they are not stable in time and can switch from positive to negative or vice versa, while the correlation with SPEI3 drought index, which is a integration of both climatic parameters, is stable in time. By employing the stability map analysis, we show that oak and ash tree ring components, from the eastern part of the Republic of Moldova, have a stable and significant correlation with SPEI3 and scPDSI drought indices from February (January) until September, over the eastern part of Europe.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
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    Diversity of Bacterioplankton and Bacteriobenthos from the Veracruz Reef System, Southwestern Gulf of Mexico (2021)
    MDPI
    In:  EPIC3Microorganisms, MDPI, 9(3), pp. 619, ISSN: 2076-2607
    Details
    Publication Date: 2021-03-19
    Description: Bacterial diversity was explored among field samples and cultured isolates from coral reefs within the Veracruz Reef System. Bacterioplankton and bacteriobenthos were characterized by pyrosequencing 16S rRNA genes. Identified sequences belonged to the kingdom Bacteria and classified into 33 phyla. Proteobacteria (likely SAR11 clade) dominated in collective field samples, whereas Firmicutes were the most abundant taxa among cultured isolates. Bioinformatic sorting of sequences to family level revealed 223 bacterial families. Pseudomonadaceae, Exiguobacteraceae and Bacillaceae were dominant among cultured isolates. Vibrionaceae, Alteromonadaceae, and Flavobacteriaceae dominated in reef-associated sediments, whereas Rickettsiaceae and Synechoccaceae were more highly represented in the water column. Bacterial communities from sediments were more diverse than from the water column. This study reveals cryptic bacterial diversity among microenvironmental components of marine microbial reef communities subject to differential influence of anthropogenic stressors. Such investigations are critical for constructing scenarios of environmentally induced shifts in bacterial biodiversity and species composition.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 3
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    Ensemble Mapping and Change Analysis of the Seafloor Sediment Distribution in the Sylt Outer Reef, German North Sea from 2016 to 2018 (2021)
    MDPI
    In:  EPIC3Water, MDPI, 13(16), pp. 2254, ISSN: 2073-4441
    Details
    Publication Date: 2021-08-24
    Description: Recent studies on seafloor mapping have presented different modelling methods for the automatic classification of seafloor sediments. However, most of these studies have applied these models to seafloor data with appropriate numbers of ground-truth samples and without consideration of the imbalances in the ground-truth datasets. In this study, we aim to address these issues by conducting class-specific predictions using ensemble modelling to map seafloor sediment distributions with minimal ground-truth data combined with hydroacoustic datasets. The resulting class-specific maps were then assembled into a sediment classification map, in which the most probable class was assigned to the appropriate location. Our approach was able to predict sediment classes without bias to the class with more ground-truth data and produced reliable seafloor sediment distributions maps that can be used for seafloor monitoring. The methods presented can also be used for other underwater exploration studies with minimal ground-truth data. Sediment shifts of a heterogenous seafloor in the Sylt Outer Reef, German North Sea were also assessed to understand the sediment dynamics in the marine conservation area during two different short timescales: 2016–2018 (17 months) and 2018–2019 (4 months). The analyses of the sediment shifts showed that the western area of the Sylt Outer Reef experienced sediment fluctuations but the morphology of the bedform features was relatively stable. The results provided information on the seafloor dynamics, which can assist in the management of the marine conservation area.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 4
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    Unknown Extracellular and Bioactive Metabolites of the Genus Alexandrium: A Review of Overlooked Toxins (2021)
    MDPI
    In:  EPIC3Toxins, MDPI, 13, pp. 905, ISSN: 2072-6651
    Details
    Publication Date: 2021-12-22
    Description: Various species of Alexandrium can produce a number of bioactive compounds, e.g., paralytic shellfish toxins (PSTs), spirolides, gymnodimines, goniodomins, and also uncharacterised bioactive extracellular compounds (BECs). The latter metabolites are released into the environment and affect a large range of organisms (from protists to fishes and mammalian cell lines). These compounds mediate allelochemical interactions, have anti-grazing and anti-parasitic activities, and have a potentially strong structuring role for the dynamic of Alexandrium blooms. In many studies evaluating the effects of Alexandrium on marine organisms, only the classical toxins were reported and the involvement of BECs was not considered. A lack of information on the presence/absence of BECs in experimental strains is likely the cause of contrasting results in the literature that render impossible a distinction between PSTs and BECs effects. We review the knowledge on Alexandrium BEC, (i.e., producing species, target cells, physiological effects, detection methods and molecular candidates). Overall, we highlight the need to identify the nature of Alexandrium BECs and urge further research on the chemical interactions according to their ecological importance in the planktonic chemical warfare and due to their potential collateral damage to a wide range of organisms.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 5
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    Genome-Scale Metabolic Reconstruction and in Silico Perturbation Analysis of the Polar Diatom Fragilariopsis cylindrus Predicts High Metabolic Robustness (2020)
    MDPI
    In:  Biology, 9 (2). Art.Nr. 30.
    Details
    Publication Date: 2021-01-08
    Description: Diatoms are major primary producers in polar environments where they can actively grow under extremely variable conditions. Integrative modeling using a genome-scale model (GSM) is a powerful approach to decipher the complex interactions between components of diatom metabolism and can provide insights into metabolic mechanisms underlying their evolutionary success in polar ecosystems. We developed the first GSM for a polar diatom, Fragilariopsis cylindrus, which enabled us to study its metabolic robustness using sensitivity analysis. We find that the predicted growth rate was robust to changes in all model parameters (i.e., cell biochemical composition) except the carbon uptake rate. Constraints on total cellular carbon buffer the effect of changes in the input parameters on reaction fluxes and growth rate. We also show that single reaction deletion of 20% to 32% of active (nonzero flux) reactions and single gene deletion of 44% to 55% of genes associated with active reactions affected the growth rate, as well as the production fluxes of total protein, lipid, carbohydrate, DNA, RNA, and pigments by less than 1%, which was due to the activation of compensatory reactions (e.g., analogous enzymes and alternative pathways) with more highly connected metabolites involved in the reactions that were robust to deletion. Interestingly, including highly divergent alleles unique for F. cylindrus increased its metabolic robustness to cellular perturbations even more. Overall, our results underscore the high robustness of metabolism in F. cylindrus, a feature that likely helps to maintain cell homeostasis under polar conditions.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.3390/biology9020030
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 6
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    Multi-Use of the Sea as a Sustainable Development Instrument in Five EU Sea Basins (2021)
    MDPI
    In:  EPIC3Sustainability, MDPI, 13(15), pp. 1-16, ISSN: 2071-1050
    Details
    Publication Date: 2021-07-23
    Description: This paper examines the concept of maritime multi-use as a territorial/SPATIAL governance instrument for the enhancement of sustainable development in five EU sea basins. Multi-use (MU) is expected to enhance the productivity of blue economy sectors, as well as deliver additional socio-economic benefits related to the environmental and social dimensions of sustainable development. The paper provides a definition of maritime multi-use and identifies the multi-uses with the highest potential in EU sea basins. In each sea basin, multi-use plays a different role as concerns sustainable development. For the Eastern Baltic Sea, the Mediterranean Sea and the Black Sea, the MU focus should remain on the environmental pillar of sustainable development. In the North Sea, North Atlantic and Western Baltic Sea, addressing social sustainability seems a key precondition for success of MU in enhancement of sustainable spatial development at sea. Moreover, it has been suggested to introduce MU key global strategies such as SDGs or Macroregional strategies and action plans and to supplement maritime spatial planning with sectoral incentives and educational efforts as key vehicles supporting MU. The paper concludes by identifying aspects which, in order to inform maritime spatial planning and maritime governance regarding a more conscious application of the aforementioned concept, require further investigation. Key tasks are related to: more profound evaluation of performance of policies supporting MUs, researching the impact of MU on societal goals and on the MU costs and benefits, including external ones, and finally identifying the impact of MU on the development of various sectors and regions on land.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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  • 7
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    Impact of Freshwater Inflow From the Volturno River on Coastal Circulation (2021)
    MDPI
    Details
    Publication Date: 2021-01-26
    Description: The coastal area located in front of the Volturno river estuary (the Gulf of Gaeta, central-eastern Tyrrhenian Sea) was synoptically sampled in seven surveys between June 2012 and October 2014. Vertical profiles of temperature and salinity were acquired on a high-resolution nearly-regular grid in order to describe the spatial and temporal variability of the characteristics of the waters. Moreover, the three-dimensional velocity field associated with each survey was computed through the full momentum equations of the Princeton Ocean Model to provide a first assessment of the steady-state circulation at small scale. The data analysis shows the entire water column to be characterized by an evident thermal cycle and a vertical thermohaline structure, dominated by three types of waters: the freshwater of the river, the saltier coastal Tyrrhenian waters, and transitional waters originating from their mixing. The inflow of freshwater strongly affects the density distribution, leading to strong temporal variability in the upper layer. Its impact is more evident in winter, sometimes inducing a vertical temperature inversion. In case of rainy events, and also in conditions of high vertical temperature stratification, it forms a surface-trapped layer with high density gradients. These and wind forcing contribute to the formation of small-scale shallow features, such as longshore currents and cyclonic and anticyclonic eddies. The latter influence the vertical stratification and modify the coastal circulation, preserving the transitional waters from the surrounding saltier ones.
    Description: Published
    Description: 293
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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