Description: Gel particles—a class of abundant transparent organic particles—have increasingly gathered attention in marine research. Field studies on the bacterial colonization of marine gels however are still scarce. So far, most studies on respective particles have focused on the upper ocean, while little is known on their occurrence in the deep sea. Here, we report on the vertical distribution of the two most common gel particle types, which are polysaccharide-containing transparent exopolymer particles (TEP) and proteinaceous Coomassie stainable particles (CSP), as well as numbers of bacteria attached to gel particles throughout the water column, from the surface ocean down to the bathypelagial (〈 3,000 m). Our study was conducted in the Arctic Fram Strait during northern hemispheres' summer in 2015. Besides data on the bacterial colonization of the two gel particle types (TEP and CSP), we present bacterial densities on different gel particle size classes according to 12 different sampling depths at four sampling locations. Gel particles were frequently abundant at all sampled depths, and their concentrations decreased from the euphotic zone to the dark ocean. They were colonized by bacteria at all sampled water depths with risen importance at the deepest water layers, where fractions of bacteria attached to gel particles (%) increased within the total bacterial community. Due to the omnipresent bacterial colonization of gel particles at all sampled depths in our study, we presume that euphotic production of this type of organic matter may affect microbial species distribution within the whole water column in the Fram Strait, down to the deep sea. Our results raise the question if changes in the bacterial community composition and functioning on gel particles occur over depth, which may affect microbial respiration and remineralization rates of respective particles in different water layers.

Description: The by-collection of zooplankton swimmers in time-series sediment traps offers a unique insight into year-round and inter-annual trends in zooplankton population dynamics. These samples are especially valuable in remote and difficult to access areas such as the Arctic, where samples from the ice-covered winter season are rare. In the present study we investigate the year-round swimmer composition of sediment trap samples collected at water depths of 200-300 m over a period of 12 years (2000-2012) at the LTER (Long-Term Ecological Research) observatory HAUSGARTEN located in the northeastern Fram Strait (79° N, 4° E). Here we describe seasonal and inter-annual appearances within the dominant zooplankton groups including amphipods, chaetognaths, copepods, ostracods and pteropods. Amphipods and copepods made up the largest amount of the swimmer fraction. Although the seasonal occurrence of these groups was relatively consistent between years there were notable inter-annual variations in abundance that suggested the influence of different environmental conditions. In addition to these general patterns, specific changes were also detected. Notably, concerning pelagic amphipods, the occurrence of a southern invader Themisto compressa could be observed from 2004 onwards. Concurrent to this observation a reversal in dominance of the arctic pteropod species Limacina helicina towards the subarctic-boreal L. retroversa was noticed. In addition to a long-term trend in warming in eastern Fram Strait since 1997, a warm anomaly event was also observed during late 2004 to 2007. Whether these trends indicate lasting alterations due to global environmental change, or simply reflect natural variability on multiyear time-scales is presently unclear.

Description: Pteropods are important organisms in highlatitude ecosystems, and they are expected to severely suffer from climate change in the near future. In this study, sedimentation patterns of two pteropod species, the polar Limacina helicina and the subarctic boreal L. retroversa, are presented. Time series data received by moored sediment traps at the Long-Term Ecological Research (LTER) Observatory HAUSGARTEN in eastern Fram Strait were analyzed during the years 2008 to 2012. Results were derived from four different deployment depths (200, 1,250, 2,400, and 2,550 m) at two different sites (79°N 04'200E; 79°430N 04'300E). A species-specific sedimentation pattern was present at all depths and at both sites showing maximal flux rates during September/October for L. helicina and in November/December for L. retroversa. The polar L. helicina was outnumbered by L. retroversa (55–99 %) at both positions and at all depths supporting the recently observed trend toward the dominance of the subarctic boreal species. The largest decrease in pteropod abundance occurred within the mesopelagic zone (*200–1,250 m), indicating loss via microbial degradation and grazing. Pteropod carbonate (aragonite) amounted up to *75 % of the total carbonate flux at 200 m and 2–13 % of the aragonite found in the shallow traps arrived at the deep sediment traps (*160 m above the seafloor), revealing the significance of pteropods in carbonate export at Fram Strait. Our results emphasize the relevance and the need for continuation of long-term studies to detect and trace changes in pteropod abundances and community composition and thus in the vertical transport of aragonite.

Description: The composition of particles obtained by annually moored sediment traps have been analysed at the Long-Term Ecological Research (LTER) site HAUSGARTEN in Fram Strait (79°/4°E) since 2000. The open ocean observatory is seasonally covered by sea ice and is influenced by the inflow of relatively warm Atlantic Waters at the surface. Exceptionally warm Atlantic Water with temperatures of 〉3°C entered Fram Strait during 2006/7. We present data on the export of total particulate matter (TPM), particulate organic carbon and nitrogen (POC/PON), biogenic particulate silica (bPSi), calcium carbonate (CaCO3), and protist composition achieved during 2000-2011. Annual fluxes showed greatest variation (3-5 folds) for TPM and CaCO3 flux and a drastic decrease in bPSi, a proxy for diatoms, after 2004. Variations in the flux of CaCO3 and its increase during and after the warming event in 2006/7 could be attributed to an increase of pteropods, namely the boreal species Limacina retroversa. Pteropod carbonate (aragonite) dominated with up to ~80% in the total CaCO3 flux, which is also reflected in the POC/PIC ratio indicating repercussions on the biological carbon pump.

Description: In the present study, we profiled bacterial and archaeal communities from 13 phylogenetically diverse deep-sea sponge species (Demospongiae and Hexactinellida) from the South Pacific by 16S rRNA-gene amplicon sequencing. Additionally, the associated bacteria and archaea were quantified by real-time qPCR. Our results show that bacterial communities from the deep-sea sponges are mostly host-species specific similar to what has been observed for shallow-water demosponges. The archaeal deep-sea sponge community structures are different from the bacterial community structures in that they are almost completely dominated by a single family, which are the ammonia-oxidizing genera within the Nitrosopumilaceae. Remarkably, the archaeal communities are mostly specific to individual sponges (rather than sponge-species), and this observation applies to both hexactinellids and demosponges. Finally, archaeal 16s gene numbers, as detected by quantitative real-time PCR, were up to three orders of magnitude higher than in shallow-water sponges, highlighting the importance of the archaea for deep-sea sponges in general.

Description: The original version of the Description of Additional Supplementary Files associated with this Article contained errors in the legends of Supplementary Data 5–8 and omitted legends for the Source Data. The HTML has been updated to include a corrected version of the Description of Additional Supplementary Files; the original incorrect version of this file can be found as Supplementary Information associated with this Correction.

Description: In the deep ocean symbioses between microbes and invertebrates are emerging as key drivers of ecosystem health and services. We present a large-scale analysis of microbial diversity in deep-sea sponges (Porifera) from scales of sponge individuals to ocean basins, covering 52 locations, 1077 host individuals translating into 169 sponge species (including understudied glass sponges), and 469 reference samples, collected anew during 21 ship-based expeditions. We demonstrate the impacts of the sponge microbial abundance status, geographic distance, sponge phylogeny, and the physical-biogeochemical environment as drivers of microbiome composition, in descending order of relevance. Our study further discloses that fundamental concepts of sponge microbiology apply robustly to sponges from the deep-sea across distances of 〉10,000 km. Deep-sea sponge microbiomes are less complex, yet more heterogeneous, than their shallow-water counterparts. Our analysis underscores the uniqueness of each deep-sea sponge ground based on which we provide critical knowledge for conservation of these vulnerable ecosystems.

Description: The collection of zooplankton swimmers and sinkers in time-series sediment traps provides unique insight into year-round and interannual trends in zooplankton population dynamics. These samples are particularly valuable in remote and difficult to access areas such as the Arctic Ocean, where samples from the ice-covered season are rare. In the present study, we investigated zooplankton composition based on swimmers and sinkers collected by sediment traps at water depths of 180–280, 800–1320, and 2320–2550 m, over a period of 16 yr (2000–2016) at the Long-Term Ecological Research observatory HAUSGARTEN located in the eastern Fram Strait (79°N, 4°E). The time-series data showed seasonal and interannual trends within the dominant zooplankton groups including copepoda, foraminifera, ostracoda, amphipoda, pteropoda, and chaetognatha. Amphipoda and copepoda dominated the abundance of swimmers while pteropoda and foraminifera were the most important sinkers. Although the seasonal occurrence of these groups was relatively consistent between years, there were notable interannual variations in abundance, suggesting the influence of various environmental condi- tions such as sea-ice dynamic and lateral advection of water masses, for example, meltwater and Atlantic water. Statistical analyses revealed a correlation between the Arctic dipole climatic index and sea-ice dynamics (i.e., ice coverage and concentration), as well as the importance of the distance from the ice edge on swimmer composition patterns and carbon export.