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  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 47 (2000), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . Eighteen strains of flagellated protists representing nine species were isolated and cultured from four deep-sea hydrothermal vents: Juan de Fuca Ridge (2,200 m), Guaymas Basin (2,000 m), 21° N (2,550 m) and 9° N (2,000 m). Light and electron microscopy were used to identify flagellates to genus and, when possible, species. The small subunit ribosomal RNA genes of each vent species and related strains from shallow-waters and the American Type Culture Collection were sequenced then used for comparative analysis with database sequences to place taxa in an rDNA tree. The hydrothermal vent flagellates belonged to six different taxonomic orders: the Ancyromonadida, Bicosoecida, Cercomonadida, Choanoflagellida, Chrysomonadida, and Kinetoplastida. Comparative analysis of vent isolate and database sequences resolved systematic placement of some well-known species with previously uncertain taxonomic affinities, such as Ancyromonas sigmoides, Caecitellus parvulus and Maxxixteria marina. Many of these vent isolates are ubiquitous members of marine, freshwater, and terrestrial ecosystems worldwide, suggesting a global distribution of these flagellate species.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1432-1432
    Keywords: Key words: Protozoa — Flagellate —Ancyromonas—Apusomonas— Opisthokont — 18S small subunit ribosomal DNA — Phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract. Molecular and morphological evidence points to the ancyromonad Ancyromonas as a plausible candidate for the closest relative to the common ancestor of metazoans, fungi, and choanoflagellates (the Opisthokonta). Using 18S rDNA sequences from most of the major eukaryotic lineages, maximum-likelihood, minimum-evolution, and maximum-parsimony analyses yielded congruent phylogenies supporting this hypothesis. Combined with ultrastructural similarities between Ancyromonas and opisthokonts, the evidence presented here suggests that Ancyromonas may form an independent lineage, the Ancyromonadida Cavalier-Smith 1997, closer in its relationship to the opisthokonts than is its nearest protist relatives, the Apusomonadida. However, the very low bootstrap support for deep nodes and hypothesis testing indicate that the resolving power of 18S rDNA sequences is limited for examining this aspect of eukaryotic phylogeny. Alternate branching positions for the Ancyromonas lineage cannot be robustly rejected, revealing the importance of ultrastructure when examining the origins of multicellularity. The future use of a multigene approach may additionally be needed to resolve this aspect of eukaryotic phylogeny.
    Type of Medium: Electronic Resource
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  • 3
    Publication Date: 2022-06-28
    Description: We document the geometry of a massive sill at the root of an approximately 20-m high and 800m-wide ring of hydrothermal formations, termed Ringvent, located 28.5 km off-axis on the northwestern flanking regions of the actively rifting Guaymas Basin (Gulf of California). Using petrophysical data collected during the IODP Expedition 385 and processed 2D seismic profiles, we present evidence on the mechanics of sill emplacement and how the related hydrothermal vent conduits were constructed. The currently active moderate-temperature hydrothermal vent field indicates that, despite being cold and crystallized, the magma plumbing system, is tapping into a deeper geothermal source of the basin. The vent system roots at the vertical end of the magma plumbing system with the top of the sill located at a depth range of 80 to 150 m below the seafloor. Our research aims at constraining how far deep the geothermal fluids are coming from, and identifying how close the hydrothermal system is from a steady-state condition, to draw implications for how frequently such a system may arise in nascent ocean basins.
    Type: Conference or Workshop Item , NonPeerReviewed
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  • 4
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    American Society for Microbiology
    In:  Applied and Environmental Microbiology, 81 (4). pp. 1426-1441.
    Publication Date: 2018-05-04
    Description: The zonation of anaerobic methane-cycling Archaea in hydrothermal sediment of Guaymas Basin was studied by general primer pairs (mcrI, ME1/ME2, mcrIRD) targeting the alpha subunit of methyl coenzyme M reductase gene (mcrA) and by new group-specific mcrA and 16S rRNA gene primer pairs. The mcrIRD primer pair outperformed the other general mcrA primer pairs in detection sensitivity and phylogenetic coverage. Methanotrophic ANME-1 Archaea were the only group detected with group-specific primers only. The detection of 14 mcrA lineages surpasses the diversity previously found in this location. Most phylotypes have high sequence similarities to hydrogenotrophs, methylotrophs, and anaerobic methanotrophs previously detected at Guaymas Basin or at hydrothermal vents, cold seeps, and oil reservoirs worldwide. Additionally, five mcrA phylotypes belonging to newly defined lineages are detected. Two of these belong to deeply branching new orders, while the others are new species or genera of Methanopyraceae and Methermicoccaceae. Downcore diversity decreases from all groups detected in the upper 6 cm (∼2 to 40°C, sulfate measurable to 4 cm) to only two groups below 6 cm (〉40°C). Despite the presence of hyperthermophilic genera (Methanopyrus, Methanocaldococcus) in cooler surface strata, no genes were detected below 10 cm (≥60°C). While mcrA-based and 16S rRNA gene-based community compositions are generally congruent, the deeply branching mcrA cannot be assigned to specific 16S rRNA gene lineages. Our study indicates that even among well-studied metabolic groups and in previously characterized model environments, major evolutionary branches are overlooked. Detecting these groups by improved molecular biological methods is a crucial first step toward understanding their roles in nature.
    Type: Article , PeerReviewed
    Format: text
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  • 5
    Publication Date: 2016-09-08
    Description: Kessler et al. (Reports, 21 January 2011, p. 312) reported that methane released from the 2010 Deepwater Horizon blowout, approximately 40% of the total hydrocarbon discharge, was consumed quantitatively by methanotrophic bacteria in Gulf of Mexico deep waters over a 4-month period. We find the evidence explicitly linking observed oxygen anomalies to methane consumption ambiguous and extension of these observations to hydrate-derived methane climate forcing premature.
    Type: Article , PeerReviewed
    Format: text
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  • 6
    Publication Date: 2023-02-08
    Description: Highlights • Archaeal community composition reflects locally specific environmental challenges • Biogeochemical properties do not predict archaeal community structure • Environmental history controls subseafloor archaeal populations Summary We explore archaeal distributions in sedimentary subseafloor habitats of Guaymas Basin and the adjacent Sonora Margin, located in the Gulf of California, México. Sampling locations include (1) control sediments without hydrothermal or seep influence, (2) Sonora Margin sediments underlying oxygen minimum zone water, (3) compacted, highly reduced sediments from a pressure ridge with numerous seeps at the base of the Sonora Margin, and (4) sediments impacted by hydrothermal circulation at the off-axis Ringvent site. Generally, archaeal communities largely comprise Bathyarchaeal lineages, members of the Hadesarchaea, MBG-D, TMEG, and ANME-1 groups. Variations in archaeal community composition reflect locally specific environmental challenges. Background sediments are divided into surface and subsurface niches. Overall, the environmental setting and history of a particular site, not isolated biogeochemical properties out of context, control the subseafloor archaeal communities in Guaymas Basin and Sonora Margin sediments.
    Type: Article , PeerReviewed
    Format: text
    Format: text
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  • 7
    Publication Date: 2022-03-21
    Description: We document the geometry of a massive sill at the root of an approximately 20-m high and 800m-wide ring of hydrothermal formations, termed Ringvent, located 28.5 km off-axis on the northwestern flanking regions of the actively rifting Guaymas Basin (Gulf of California). Using petrophysical data collected during the IODP Expedition 385 and processed 2D seismic profiles, we present evidence on the mechanics of sill emplacement and how the related hydrothermal vent conduits were constructed. The currently active moderate-temperature hydrothermal vent field indicates that, despite being cold and crystallized, the magma plumbing system, is tapping into a deeper geothermal source of the basin. The vent system roots at the vertical end of the magma plumbing system with the top of the sill located at a depth range of 80 to 150 m below the seafloor. Our research aims at constraining how far deep the geothermal fluids are coming from, and identifying how close the hydrothermal system is from a steady-state condition, to draw implications for how frequently such a system may arise in nascent ocean basins.
    Type: Article , NonPeerReviewed
    Format: text
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  • 8
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    Unknown
    PANGAEA
    In:  Supplement to: Zhuang, Guang-Chao; Elling, Felix J; Nigro, Lisa M; Samarkin, Vladimir A; Joye, Samantha B; Teske, Andreas P; Hinrichs, Kai-Uwe (2016): Multiple evidence for methylotrophic methanogenesis as the dominant methanogenic pathway in hypersaline sediments from the Orca Basin, Gulf of Mexico. Geochimica et Cosmochimica Acta, 187, 1-20, https://doi.org/10.1016/j.gca.2016.05.005
    Publication Date: 2023-03-03
    Description: Among the most extreme habitats on Earth, dark, deep, anoxic brines host unique microbial ecosystems that remain largely unexplored. As the terminal step of anaerobic degradation of organic matter, methanogenesis is a potentially significant but poorly constrained process in deep-sea hypersaline environments. We combined biogeochemical and phylogenetic analyses as well as incubation experiments to unravel the origin of methane in hypersaline sediments of Orca Basin in the northern Gulf of Mexico. Substantial concentrations of methane (up to 3.4 mM) coexisted with high concentrations of sulfate (16-43 mM) in two sediment cores retrieved from the northern and southern parts of Orca Basin. The strong depletion of 13C in methane (-77 to -89 per mill) pointed towards a biological source. While low concentrations of competitive substrates limited the significance of hydrogenotrophic and acetoclastic methanogenesis, the presence of non-competitive methylated substrates (methanol, trimethylamine, dimethyl sulfide, dimethylsulfoniopropionate) supported the potential for methane generation through methylotrophic methanogenesis. Thermodynamic calculations demonstrated that hydrogenotrophic and acetoclastic methanogenesis were unlikely to occur under in situ conditions, while methylotrophic methanogenesis from a variety of substrates was highly favorable. Likewise, carbon isotope relationships between methylated substrates and methane supported methylotrophic methanogenesis as the major source of methane. Stable isotope tracer and radiotracer experiments with 13C bicarbonate, acetate and methanol as well as 14C-labeled methylamine indicated that methylotrophic methanogenesis was the predominant methanogenic pathway. Based on 16S rRNA gene sequences, halophilic methylotrophic methanogens related to the genus Methanohalophilus dominated the benthic archaeal community in the northern basin but also occurred in the southern basin. High abundances of methanogen lipid biomarkers such as intact polar and polyunsaturated hydroxyarchaeols were detected in sediments from the northern basin, with lower abundances in the southern basin. Strong 13C-depletion of saturated and monounsaturated hydroxyarchaeol were consistent with methylotrophic methanogenesis as the major methanogenic pathway. Collectively, the availability of methylated substrates, thermodynamic calculations, experimentally determined methanogenic activity as well as lipid and gene biomarkers strongly suggested methylotrophic methanogenesis as predominant pathway of methane formation in the presence of sulfate in Orca Basin sediments.
    Keywords: Center for Marine Environmental Sciences; MARUM
    Type: Dataset
    Format: application/zip, 6 datasets
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  • 9
    Publication Date: 2023-03-03
    Keywords: AT18/2; AT18-2; AT18-2_6; AT18-2_7; Atlantis (1997); Center for Marine Environmental Sciences; Comment; Event label; Incubation duration; MARUM; MUC; MUC 6; MUC 7; MultiCorer; Northern Orca Basin; Southern Orca Basin; δ13C, methane
    Type: Dataset
    Format: text/tab-separated-values, 294 data points
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  • 10
    Publication Date: 2023-03-03
    Keywords: Archaeol; AT18/2; AT18-2; AT18-2_6; AT18-2_7; Atlantis (1997); Center for Marine Environmental Sciences; Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; Event label; Glycerol dialkanol diethers; Glycerol dialkyl glycerol tetraethers; Hydroxyarchaeols; Hydroxyarchaeols, unsaturated; Hydroxylated glycerol dialkyl glycerol tetraethers; MARUM; MUC; MUC 6; MUC 7; MultiCorer; Northern Orca Basin; Southern Orca Basin; Unsaturated archaeol
    Type: Dataset
    Format: text/tab-separated-values, 81 data points
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