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  • 1
    Online Resource
    Online Resource
    Dordrecht :Springer Netherlands,
    Keywords: Marine Sciences. ; Electronic books.
    Type of Medium: Online Resource
    Pages: 1 online resource (398 pages)
    Edition: 1st ed.
    ISBN: 9789401775342
    DDC: 579.88
    Language: English
    Note: Intro -- Preface -- Why Seaweed Phylogeography, Why Now? -- Acknowledgments -- Contents -- Contributors -- Part I The Field of Phylogeographic Research on Seaweeds -- 1 Seaweed Phylogeography from 1994 to 2014: An Overview -- Abstract -- 1.1 Introduction -- 1.2 Benchmark Progress -- 1.3 Global Glance -- 1.4 Taxonomic Coverage -- 1.5 Regions and Countries -- 1.6 Genetic Markers -- 1.7 Concluding Remarks and Perspectives -- Acknowledgements -- References -- 2 Paradigm Shifts in the Phylogeographic Analysis of Seaweeds -- Abstract -- 2.1 Introduction -- 2.2 Shifting Paradigms in Phylogeography -- 2.3 Methodological Considerations -- 2.3.1 Molecular Markers -- 2.3.2 Levels of Polymorphisms Influence Hypothesis Testing -- 2.3.3 Use of Multiple Markers -- 2.3.4 Sampling Schemes and Statistical Power -- 2.3.5 Molecular Clock Calibration -- 2.3.6 Reproductive Skew and Genealogical Models -- 2.4 Biological Variables Influencing Phylogeography -- 2.4.1 Inheritance of Molecular Marker -- 2.4.2 Effect of Life-History Phases on Phylogeography -- 2.4.3 Asexual and Clonal Reproduction -- 2.4.4 Self-Fertilization -- 2.4.5 Dispersal -- 2.5 Reconstructing Historical Population Events -- 2.6 Comparative Phylogeography -- 2.7 Effects of Natural Selection on Phylogeographic Structure -- 2.8 Conclusions -- Acknowledgments -- References -- 3 The Dynamic Biogeography of the Anthropocene: The Speed of Recent Range Shifts in Seaweeds -- Abstract -- 3.1 Introduction -- 3.2 Drivers of Seaweed Biogeography -- 3.2.1 Temperature -- 3.2.2 Barriers -- 3.2.3 Dispersal -- 3.2.4 Species Introductions (Human-Assisted Dispersal) -- 3.2.5 Environmental Change (Human-Induced Climate Change) -- 3.3 Speed of Range Shifts in Seaweeds -- 3.4 Case Studies of Seaweed Range Shifts and Ecological Implications -- 3.4.1 Range Contractions (Native Species). , 3.4.2 Range Expansions (Native Species) -- 3.4.3 Range Expansion (Introduced Species) -- 3.4.4 Abundance Change -- 3.5 Perspective and Conclusion: Human Impacts on Seaweed Biogeography -- 3.6 Conclusion -- Acknowledgements -- Appendix -- References -- Part IISeaweed at Sea: Floating as a DispersalMechanism -- 4 Float and Raft: Role of Buoyant Seaweeds in the Phylogeography and Genetic Structure of Non-buoyant Associated Flora -- Abstract -- 4.1 Introduction -- 4.2 Buoyant Seaweeds: Distribution and Latitudinal Patterns -- 4.3 Observations of Non-buoyant Seaweeds Associated with Buoyant Seaweeds -- 4.4 Phylogeography/Genetic Structure of Non-buoyant Seaweeds Associated with Buoyant Species -- 4.4.1 Role of the West Wind Drift (WWD) in Dispersal and Connectivity of Non-buoyant Seaweeds -- 4.4.2 Non-buoyant Fucus and buoyant Ascophyllum, an Example from the Northern Hemisphere -- 4.4.3 The Kelp Conveyor Hypothesis -- 4.4.4 Genetic Analysis of Stranded Kelps -- 4.5 Environmental Factors Determining a Successful Rafting Journey -- 4.5.1 Availability of Floating Substrata -- 4.5.2 Detachment -- 4.5.3 Colonization of Floating Substrata -- 4.5.4 Attachment Site and Strength -- 4.5.5 Survival on Rafts -- 4.5.6 Colonization of New Habitats -- 4.6 Physiology of Non-floating Algae and Reproductive Patterns -- 4.6.1 Physiological Performance -- 4.6.2 Reproductive Patterns -- 4.7 Conclusions and Outlook -- Acknowledgements -- References -- 5 Change in Southern Hemisphere Intertidal Communities Through Climate Cycles: The Role of Dispersing Algae -- Abstract -- 5.1 Introduction -- 5.2 Pleistocene Glacial---Interglacial Cycles -- 5.3 Phylogeographic Evidence for Changes in Intertidal Communities Through Climate Cycles -- 5.3.1 Polar and Sub-polar Latitudes -- 5.3.2 Tropical and Temperate Latitudes -- 5.4 Effects of Dispersal Ability on Community Structure. , 5.5 Summary and Outlook -- Acknowledgements -- References -- Part IIIInvasive Seaweeds -- 6 Non-native Seaweeds Drive Changes in Marine Coastal Communities Around the World -- Abstract -- 6.1 Introduction---Scope of Seaweed Invasions -- 6.2 Research on and Numbers of Non-native Seaweeds -- 6.3 How Non-native Seaweeds Get Around -- 6.4 Success and Impacts of Non-native Seaweeds -- 6.5 Common Types of Ecological Impacts -- 6.6 Impacts Reviewed Across Studies, Seaweeds and Habitats -- 6.7 New Meta-analysis -- Impact Is Density-dependent and Non-native Seaweeds Affect Community Similarity -- 6.7.1 New Meta-analysis 1: Density-dependent Effects -- 6.7.2 New Meta-analysis 2: Effects on Community Structures -- 6.8 Summary -- Acknowledgements -- References -- 7 Towards an Integrative Phylogeography of Invasive Marine Seaweeds, Based on Multiple Lines of Evidence -- Abstract -- 7.1 Introduction -- 7.2 The Advantages of Molecular Tools in Delineating Species -- 7.3 Multiple Cryptic Endemisms or Introduced Lineages Within Cosmopolitan Species? -- 7.4 The Impact of Multiple Invasive Life Stages -- 7.5 Vectors of Introduction Promote Relocations of Seaweeds: Range Shifts Versus Niche Shifts -- 7.6 Multiple Introductions from a Single Source -- 7.7 Introductions from Multiple Sources -- 7.8 Differences Between Donor and Introduced Populations -- 7.9 Integrative Taxonomy and Phylogeography: Combining Multiple Lines of Evidence -- 7.10 The Utility of Combining Multiple Lines of Evidence in the Study of Invasive Seaweeds -- 7.11 Modern Technology and Metabarcoding in the Study of Invasive Seaweeds -- 7.12 Conclusion -- Acknowledgments -- References -- Part IVComparative Phylogeographyof Seaweeds -- 8 Phylogeography of Tropical Pacific Marine Algae -- Abstract -- 8.1 Introduction -- 8.2 Geology of the Tropical Oceans -- 8.3 Speciation in the Marine Tropical Pacific. , 8.4 Dispersal of Seaweeds -- 8.5 General Patterns of Pacific Marine Tropical Biodiversity -- 8.6 Marine Algal Phylogeographic Patterns in the Tropical Pacific -- 8.7 Summary of Tropical Marine Algal Phylogeographic Patterns -- 8.8 Perspectives for Future Research -- References -- 9 Evolution and Biogeography of Laminarialean Kelps -- Abstract -- 9.1 Background -- 9.2 Historical Review of the Taxonomy of Laminariales -- 9.3 Systematics and Phylogeography of Selected Genera -- 9.3.1 Phylogeny and Congeneric Phylogeography of Chorda -- 9.4 Phylogeny of Laminarialean Crown Taxa -- 9.5 Phylogeny and Phylogeography of Undaria -- 9.5.1 Taxonomy of Undaria Species -- 9.5.2 Phylogeography of Undaria Pinnatifida -- 9.5.3 Indigenous Populations -- 9.5.4 Nonindigenous Populations -- 9.6 Future Work -- Acknowledgments -- References -- 10 Phylogeography of Seaweeds in the South East Pacific: Complex Evolutionary Processes Along a Latitudinal Gradient -- Abstract -- 10.1 Introduction -- 10.2 Major Biogeographical Characteristics of the SEP Coast: Linear Gradient or Strong Regional Pattern? -- 10.3 Phylogeography: The Problem of Cryptic Species and Consequences for the Delineation of Species Range Distributions -- 10.4 Parapatric Distribution and Speciation Processes Along a Linear Coast -- 10.4.1 Cryptic Phylogenetic Species Within Previously Reported Morphospecies: Phylogenetic Breaks that Do not Always Fit the Biogeographical Boundaries -- 10.4.2 Genetic Diversity and Structure Within SEP Endemic Taxa -- 10.5 Post-glacial Histories: Distinguishing Between Local Population Recovery and Trans-oceanic Introductions -- 10.6 Prospects and Challenges Ahead -- Acknowledgments -- References -- 11 Climate Oscillations, Range Shifts and Phylogeographic Patterns of North Atlantic Fucaceae -- Abstract -- 11.1 Introduction. , 11.2 Climate-Driven Range Dynamics of North Atlantic Fucoids -- 11.2.1 Glaciations Affect SST, Sea level and Habitat Availability -- 11.2.2 Southern Glacial Ranges, Post-Glacial Range Shifts and Glacial Pockets -- 11.2.3 Glacial Refugia -- 11.2.3.1 Brittany and South-Western Ireland -- 11.2.3.2 North-western Iberia -- 11.2.3.3 Southern Iberia/Morocco -- 11.2.3.4 Northern Europe -- 11.2.3.5 Canadian Maritimes -- 11.2.4 Patterns of Post-glacial Poleward Expansions in the North-east Atlantic -- 11.3 Long-Distance Range Expansions but Poor or no Gene Flow Across Genetic Breaks -- 11.4 Human Impacts---Species Introductions and Climate Change -- 11.4.1 Unintentional Introductions Linked to Maritime Traffic Can Affect Phylogeography -- 11.4.2 Climate Change and Predicted Loss of Southern Ranges and Associated Endemic Diversity -- 11.5 General Conclusions -- References -- 12 Survival in Glacial Refugia Versus Postglacial Dispersal in the North Atlantic: The Cases of Red Seaweeds -- Abstract -- 12.1 Introduction -- 12.2 Climate Shifts and Environmental Variables in the North Atlantic -- 12.3 The North Atlantic as a Model for Phylogeographic Studies of Red Seaweeds -- 12.4 Two Contrasting Hypotheses -- 12.5 Glacial Refugia in the North Atlantic -- 12.5.1 Eastern North Atlantic Refugia -- 12.5.2 Western North Atlantic Refugia -- 12.6 Vicariant Isolation and Trans-Atlantic Dispersal -- 12.6.1 Demographic Histories -- 12.7 Survival in Glacial Refugia Versus Postglacial Dispersal -- 12.8 Concluding Remarks -- Acknowledgments -- References -- 13 Comparative Population Genetics of Red Alga Occupying Different Salinity Conditions -- Abstract -- 13.1 Introduction -- 13.2 Life Histories and Reproduction of Red Algae -- 13.3 Genetic Tools for Population Genetic Analyses on Red Algae -- 13.4 Challenges of Red Algal Populations Occupying Different Salinity Conditions. , 13.5 Genetic Diversity and Differentiation of Red Algal Populations Occupying Different Salinity Conditions.
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  • 2
    Publication Date: 2023-02-08
    Description: Ecological processes and intra-specific genetic diversity reciprocally affect each other. While the importance of uniting ecological variables and genetic variation to understand species’ plasticity, adaptation, and evolution is increasingly recognized, only few studies have attempted to address the intersection of population ecology and genetics using marine macrophyte as models. Representative empirical case studies on genetic diversity are reviewed that explore ecological and evolutionary processes in marine macrophytes. These include studies on environment-induced phenotypic plasticity and associated ecological adaptation; population genetic variation and structuring driven by ecological variation; and ecological consequences mediated by intraspecific and interspecific diversity. Knowledge gaps are also discussed that impede the connection of ecology and genetics in macrophytes and possible approaches to address these issues. Finally, an eco-evolutionary perspective is advocated, by incorporating structural-to-functional genomics and life cycle complexity, to increase the understanding of the adaptation and evolution of macrophytes in response to environmental heterogeneity.
    Type: Article , PeerReviewed
    Format: text
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  • 3
    Publication Date: 2023-02-08
    Description: The repeated transgression and regression of coastlines mediated by the late Quaternary glacial–interglacial cycles make the northwest Pacific a hot spot to study marine speciation and population diversity. The red alga Agarophyton vermiculophyllum is an ecologically important species native to the northwest Pacific, capturing considerable research interest due to its wide-range invasiveness in Europe and North America. However, the knowledge of phylogeographic structure and intraspecific genetic diversity across the entire native range was still scarce. Here, we used 1,214-bp of mitochondrial cytochrome c oxidase subunit 1 (cox1) to explore phylogeographic patterns, lineage structure, and population genetic differentiation of 48 A. vermiculophyllum populations in the northwest Pacific. Our DNA data revealed overall high haplotype diversity and low nucleotide diversity and five phylogeographically structured genetic lineages that diverged significantly from each other. S-DIVA analysis showed the ancestors of A. vermiculophyllum originating from multiple areas encompassing the Japan–Pacific coast, East and South China Seas. This combined evidence indicates that A. vermiculophyllum might have survived in multiple scattered glacial refugia during the late Quaternary climate oscillations in the northwest Pacific. Such knowledge may help to better understand how palaeoclimate interacted with contemporary environments to contribute to intraspecific genetic variation and provide a new perspective for conserving natural resource of A. vermiculophyllum in the northwest Pacific.
    Type: Article , PeerReviewed
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  • 4
    Publication Date: 2024-02-07
    Description: Epibacterial communities on seaweeds are affected by several abiotic factors such as temperature and acidification. Due to global warming, surface seawater temperatures are expected to increase by 0.5–5 °C in the next century. However, how epibacterial communities associated with seaweeds will respond to global warming remains unknown. In this study, we investigated the response of epibacterial communities associated with the invasive Gracilaria vermiculophylla exposed to 3 °C above ambient temperature for 4 months using a benthocosm system in Kiel, Germany, and 16S rRNA gene amplicon sequencing. The results showed that elevated temperature affected the beta-diversity of the epibacterial communities. Some potential seaweed pathogens such as Pseudoalteromonas, Vibrio, Thalassotalea, and Acinetobacter were identified as indicator genera at the elevated temperature level. Thirteen core raw amplicon sequence variants in the elevated temperature group were the same as the populations distributed over a wide geographical range, indicating that these core ASVs may play an important role in the invasive G. vermicullophylla. Overall, this study not only contributes to a better understanding of how epibacterial communities associated with G. vermiculophylla may adapt to ocean warming, but also lays the foundation for further exploration of the interactions between G. vermiculophylla and its epimicrobiota.
    Type: Article , PeerReviewed
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  • 5
    Publication Date: 2024-02-07
    Description: Invasive species can successfully and rapidly colonize new niches and expand ranges via founder effects and enhanced tolerance towards environmental stresses. However, the underpinning molecular mechanisms (i.e., gene expression changes) facilitating rapid adaptation to harsh environments are still poorly understood. The red seaweed Gracilaria vermiculophylla, which is native to the northwest Pacific but invaded North American and European coastal habitats over the last 100 years, provides an excellent model to examine whether enhanced tolerance at the level of gene expression contributed to its invasion success. We collected G. vermiculophylla from its native range in Japan and from two non-native regions along the Delmarva Peninsula (Eastern United States) and in Germany. Thalli were reared in a common garden for 4 months at which time we performed comparative transcriptome (mRNA) and microRNA (miRNA) sequencing. MRNA-expression profiling identified 59 genes that were differently expressed between native and non-native thalli. Of these genes, most were involved in metabolic pathways, including photosynthesis, abiotic stress, and biosynthesis of products and hormones in all four non-native sites. MiRNA-based target-gene correlation analysis in native/non-native pairs revealed that some target genes are positively or negatively regulated via epigenetic mechanisms. Importantly, these genes are mostly associated with metabolism and defence capability (e.g., metal transporter Nramp5, senescence-associated protein, cell wall-associated hydrolase, ycf68 protein and cytochrome P450-like TBP). Thus, our gene expression results indicate that resource reallocation to metabolic processes is most likely a predominant mechanism contributing to the range-wide persistence and adaptation of G. vermiculophylla in the invaded range. This study, therefore, provides molecular insight into the speed and nature of invasion-mediated rapid adaption.
    Type: Article , PeerReviewed
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  • 6
    Publication Date: 2024-02-07
    Description: Ocean warming is one of the most important factors in shaping the spatial distribution and genetic biodiversity of marine organisms worldwide. The northwest Pacific has been broadly illustrated as an essential seaweed diversity hotspot. However, few studies have yet investigated in this region on whether and how past and ongoing climate warming impacted the distribution and genetic pools of coastal seaweeds. Here, we chose the invasive species Gracilaria vermiculophylla as a model, and identified multiple genetic lineages in the native range through genome-scale microsatellite genotyping. Subsequently, by reconstructing decadal trends of sea surface temperature (SST) change between 1978 and 2018, we found that SST in northern Japan and the East China Sea indeed increased broadly by 0.25-0.4°C/decade. The projections of species distribution models (SDMs) under different future climate change scenarios (RCP 2.6, RCP 4.5, RCP 6.0 and RCP 8.5) indicated that a unique genetic pool of G. vermiculophylla at its current southern range limit (i.e. the South China Sea) is at high risk of disappearance, and that the populations at its current northern range limit (i.e. in Hokkaido region) will undergo poleward expansions, particularly by the year 2100. Such responses, along with this species’ limited dispersal potential, may considerably alter the contemporary distribution and genetic composition of G. vermiculophylla in the northwest Pacific, and ultimately threaten ecological services provided by this habitat-forming species and other associated functional roles.
    Type: Article , PeerReviewed
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  • 7
    Publication Date: 2024-05-16
    Description: Species classified in the genus Ulva are important foundational marine primary producers distributed worldwide. These species are particularly abundant and diverse through the northwest Pacific (NWP) where they experience marked latitudinal gradients of environmental heterogeneity. It is unclear, however, to what extent such dynamic conditions can modulate phenotypic and genetic patterns in these organisms, potentially reflecting the influence of historical and contemporary biotic and abiotic factors. Here, we assessed inter- and intra-specific genetic patterns of Ulva species through the NWP using plastid rbc L and tuf A gene sequences. Although we initially targeted Ulva australis based on morphological identification, we recovered eight Ulva genetic entities masked by morphological similarities. Except for the Ulva linza–procera–prolifera and U. lactuca–reticulata complexes, six of these genetic entities were recovered as individual species (i.e., U. australis , U. ohnoi , U. californica , U. compressa , U. lacinulata , and U. arasakii ), and showed biogeographic patterns likely explained by clines in sea surface temperature and ocean current dispersal. At intra-specific level, all the genetic entities showed low genetic variation and divergence based on rbc L (0–0.3 %) and tuf A (0–0.9 %) data. Our results provide insights regarding intra- and inter-specific genetic patterns characterizing morphologically similar Ulva species through the NWP. However, further studies are needed to understand the mechanisms underpinning such patterns and the associated ecological and evolutionary implications.
    Type: Article , PeerReviewed
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