Description: The vast majority of freshly produced oceanic dissolved organic carbon (DOC) is derived from marine phytoplankton, then rapidly recycled by heterotrophic microbes. A small fraction of this DOC survives long enough to be routed to the interior ocean, which houses the largest and oldest DOC reservoir. DOC reactivity depends upon its intrinsic chemical composition and extrinsic environmental conditions. Therefore, recalcitrance is an emergent property of DOC that is analytically difficult to constrain. New isotopic techniques that track the flow of carbon through individual organic molecules show promise in unveiling specific biosynthetic or degradation pathways that control the metabolic turnover of DOC and its accumulation in the deep ocean. However, a multivariate approach is required to constrain current carbon fluxes so that we may better predict how the cycling of oceanic DOC will be altered with continued climate change. Ocean warming, acidification, and oxygen depletion may upset the balance between the primary production and heterotrophic reworking of DOC, thus modifying the amount and/or composition of recalcitrant DOC. Climate change and anthropogenic activities may enhance mobilization of terrestrial DOC and/or stimulate DOC production in coastal waters, but it is unclear how this would affect the flux of DOC to the open ocean. Here, we assess current knowledge on the oceanic DOC cycle and identify research gaps that must be addressed to successfully implement its use in global scale carbon models.

Description: Marine transform faults and associated fracture zones (MTFFZs) cover vast stretches of the ocean floor, where they play a key role in plate tectonics, accommodating the lateral movement of tectonic plates and allowing connections between ridges and trenches. Together with the continental counterparts of MTFFZs, these structures also pose a risk to human societies as they can generate high magnitude earthquakes and trigger tsunamis. Historical examples are the Sumatra-Wharton Basin Earthquake in 2012 (M8.6) and the Atlantic Gloria Fault Earthquake in 1941 (M8.4). Earthquakes at MTFFZs furthermore open and sustain pathways for fluid flow triggering reactions with the host rocks that may permanently change the rheological properties of the oceanic lithosphere. In fact, they may act as conduits mediating vertical fluid flow and leading to elemental exchanges between Earth’s mantle and overlying sediments. Chemicals transported upward in MTFFZs include energy substrates, such as H2 and volatile hydrocarbons, which then sustain chemosynthetic, microbial ecosystems at and below the seafloor. Moreover, up- or downwelling of fluids within the complex system of fractures and seismogenic faults along MTFFZs could modify earthquake cycles and/or serve as “detectors” for changes in the stress state during interseismic phases. Despite their likely global importance, the large areas where transform faults and fracture zones occur are still underexplored, as are the coupling mechanisms between seismic activity, fluid flow, and life. This manuscript provides an interdisciplinary review and synthesis of scientific progress at or related to MTFFZs and specifies approaches and strategies to deepen the understanding of processes that trigger, maintain, and control fluid flow at MTFFZs.

Description: In contrast to the abundance of information on bacterial and eubacterial growth associated with photoautotrophic fixation of dissolved carbon dioxide, much less information exists on microbial formation and particularly on the consumption of methane in marine sediments and associated lipid biomarkers ultimately preserved in the sedimentary record. Therefore, molecular and stable carbon isotope analysis of biomarkers were performed to determine either known or as yet unknown biomarkers derived from methanogenic and methanotrophic sources in methane-dominated marine environments.

Description: Saanich Inlet has been a highly productive fjord since the last glaciation. During ODP Leg 169S, nearly 70 m of Holocene sediments were recovered from Hole 1034 at the center of the inlet. The younger sediments are laminated, anaerobic, and rich in organic material (1–2.5 wt.% Corg), whereas the older sediments below 70 mbsf are non-laminated, aerobic, with glacio-marine characteristics and have a significantly lower organic matter content. This difference is also reflected in the changes of interstitial fluids, and in biomarker compositions and their carbon isotope signals. The bacterially-derived hopanoid 17α(H),21β(H)-hop-22(29)-ene (diploptene) occurs in Saanich Inlet sediments throughout the Holocene but is not present in Pleistocene glacio-marine sediments. Its concentration increases after ∼6000 years BP up to present time to about 70 μg/g Corg, whereas terrigenous biomarkers such as the n-alkane C31 are low throughout the Holocene (〈51 μg/g Corg) and even slightly decrease to 36 μg/g Corg at the most recent time. The increasing concentrations of diploptene in sediments younger than ∼6000 years BP separate a recent period of higher primary productivity, stronger anoxic bottom waters, and higher bacterial activity from an older period with lesser activity, heretofore undifferentiated. Carbon isotopic compositions of diploptene in the Holocene are between −31.5 and −39.6‰ PDB after ∼6000 years BP. These differences in the carbon isotopic record of diploptene probably reflect changes in microbial community structure of bacteria living at the oxic–anoxic interface of the overlying water column. The heavier isotope values are consistent with the activity of nitrifying bacteria and the lighter isotope values with that of aerobic methanotrophic bacteria. Therefore, intermediate δ13C values probably represent mixtures between the populations. In contrast, carbon isotopic compositions of n-C31 are roughly constant at −31.4±1.1‰ PDB throughout the Holocene, indicating a uniform input from cuticular waxes of higher plants. Prior to ∼6000 years BP, diploptene enriched in 13C of up to −26.3‰ PDB is indicative of cyanobacteria living in the photic zone and suggests a period of lower primary productivity, more oxygenated bottom waters, and hence lower bacterial activity during the earliest Holocene.

Description: Highlights: • Constraining sources of core and intact archaeal lipids with stable C isotopic ratios. • No evidence for sedimentary sources of IPL crenarchaeol. • Evidence of sedimentary production of IPL caldarchaeol and BDGT-0. • Higher organic matter content promotes higher activity of sedimentary archaea. • Archaeol is a sensitive indicator of sedimentary archaea. Archaea occupy an important niche in the global carbon cycle and their lipids are widely used as indicators of environmental conditions in both paleoenvironmental and modern biogeochemical studies. The principal sources of archaeal lipids in marine sediments are benthic archaea, fossil remnants of planktonic archaea, and allochthonous sources such as soils. However, the relative contributions of these sources to the sedimentary lipid pool have not been comprehensively constrained, complicating a mechanistic understanding of archaeal lipid proxies. In order to provide insights into the relative contributions of these sources and identify signals derived from sedimentary activity, we performed a systematic survey of stable carbon isotopic compositions (delta C-13) of both core and intact archaeal lipids via analyses of their phytanyl (Phy) and biphytanyl (BP) moieties in diverse marine sediments. The sample set consisted of 44 sediment horizons from the Mediterranean and adjacent basins and represented diverse sources of organic matter and depositional conditions. Complementary geochemical data enabled the comparison of lipid distributions and carbon isotopic signatures with prevailing redox conditions. The delta C-13 of tricyclic BP (BPcren) from the core and intact forms of crenarchaeol ranged from -19.1 to -28.6% and -18.1 to -27.4%, respectively. delta C-13 values of core and intact BPcren did not differ, suggesting that intact crenarchaeol is either a fossil relic from planktonic archaea or a product of lipid recycling by benthic archaea, as opposed to being synthesized de novo by sedimentary archaea. delta C-13 values of BP0 derived from core and intact forms of glycerol and butanetriol dibiphytanyl glycerol tetraethers (GDGTs and BGDTs, respectively), but predominantly from caldarchaeol (GDGT-0), ranged from -19.4 to -32.0% and -20.9 to -37.0%, respectively. In contrast to BPcren, intact-lipid derived BP0 was often C-13-depleted relative to its core counterpart, consistent with in situ production by sedimentary archaea. This relative depletion was most pronounced in sulfate reduction zones, likely due to heterotrophic activity. Core and intact archaeol exhibited the largest ranges in delta C-13 values, from -21.6 to -42.1% and -22.7 to -58.9%, respectively. This strong C-13-depletion relative to both total organic carbon and dissolved inorganic carbon is consistent with mixtures of functional sources of sedimentary chemolithoautotrophic, methanotrophic, methanogenic and heterotrophic archaea. Based on the substantial C-13-depletion of BPcren and BP0 in samples in the vicinity of the Rhone River delta relative to a distal marine reference site, we infer that the terrestrial soil contribution of archaeal lipids to these sediments is as high as 43%. Hence, terrestrial input of archaeal lipids, including their intact forms, can be substantial and suggests caution when using existing molecular proxies aimed at constraining riverine input. In summary, our comparative isotopic analysis of sedimentary core versus intact archaeal lipids improves the apportionment of their diverse sources and confidence in distinguishing in situ lipid production by sedimentary archaea.

Description: In the hadal zone of the ocean (6–11 km), the characteristics of sinking marine snow particles and their attached microbial communities remain elusive, despite their potential importance for benthic life thriving at extreme pressures (60–110 MPa). Here, we used simulation experiments to explore how increasing pressure levels modify the microbial degradation, organic matter composition, and microbiome of sinking diatom aggregates. Individual aggregates were incubated in rotating tanks in which pressure was incrementally increased to simulate a descent from surface to hadal depth within 20 days. Incubations at atmospheric pressure served as controls. With increasing pressure, microbial respiration and diatom degradation decreased gradually and ceased completely at 60 MPa. Dissolved organic carbon leaked substantially from the aggregates at ≥40 MPa, while diatom lipid and pigment contents decreased moderately. Bacterial abundance remained stable at 〉40 MPa, but bacterial community composition changed significantly at 60–100 MPa. Thus, pressure exposure reduces microbial degradation and transforms both organic matter composition and microbiomes of sinking particles, which may seed hadal sediments with relatively fresh particulate organic matter and putative pressure-tolerant microbes.

Description: The Black Sea is a permanently anoxic, marine basin serving as model system for the deposition of organic-rich sediments in a highly stratified ocean. In such systems, archaeal lipids are widely used as paleoceanographic and biogeochemical proxies; however, the diverse planktonic and benthic sources as well as their potentially distinct diagenetic fate may complicate their application. To track the flux of archaeal lipids and to constrain their sources and turnover, we quantitatively examined the distributions and stable carbon isotopic compositions (delta 13C) of intact polar lipids (IPLs) and core lipids (CLs) from the upper oxic water column into the underlying sediments, reaching deposits from the last glacial. The distribution of IPLs responded more sensitively to the geochemical zonation than the CLs, with the latter being governed by the deposition from the chemocline. The isotopic composition of archaeal lipids indicates CLs and IPLs in the deep anoxic water column have negligible influence on the sedimentary pool. Archaeol substitutes tetraether lipids as the most abundant IPL in the deep anoxic water column and the lacustrine methanic zone. Its elevated IPL/CL ratios and negative delta 13C values indicate active methane metabolism. Sedimentary CL- and IPL-crenarchaeol were exclusively derived from the water column, as indicated by non-variable delta 13C values that are identical to those in the chemocline and by the low BIT (branched isoprenoid tetraether index). By contrast, in situ production accounts on average for 22% of the sedimentary IPL-GDGT-0 (glycerol dibiphytanyl glycerol tetraether) based on isotopic mass balance using the fermentation product lactate as an endmember for the dissolved substrate pool. Despite the structural similarity, glycosidic crenarchaeol appears to be more recalcitrant in comparison to its non-cycloalkylated counterpart GDGT-0, as indicated by its consistently higher IPL/CL ratio in sediments. The higher TEX86, CCaT, and GDGT-2/-3 values in glacial sediments could plausibly result from selective turnover of archaeal lipids and/or an archaeal ecology shift during the transition from the glacial lacustrine to the Holocene marine setting. Our in-depth molecular-isotopic examination of archaeal core and intact polar lipids provided new constraints on the sources and fate of archaeal lipids and their applicability in paleoceanographic and biogeochemical studies.