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  • 1
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    Mesoscale eddies influence the movements of mature female white sharks in the Gulf Stream and Sargasso Sea (2018)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 7363, doi:10.1038/s41598-018-25565-8.
    Description: Satellite-tracking of mature white sharks (Carcharodon carcharias) has revealed open-ocean movements spanning months and covering tens of thousands of kilometers. But how are the energetic demands of these active apex predators met as they leave coastal areas with relatively high prey abundance to swim across the open ocean through waters often characterized as biological deserts? Here we investigate mesoscale oceanographic variability encountered by two white sharks as they moved through the Gulf Stream region and Sargasso Sea in the North Atlantic Ocean. In the vicinity of the Gulf Stream, the two mature female white sharks exhibited extensive use of the interiors of clockwise-rotating anticyclonic eddies, characterized by positive (warm) temperature anomalies. One tagged white shark was also equipped with an archival tag that indicated this individual made frequent dives to nearly 1,000 m in anticyclones, where it was presumably foraging on mesopelagic prey. We propose that warm temperature anomalies in anticyclones make prey more accessible and energetically profitable to adult white sharks in the Gulf Stream region by reducing the physiological costs of thermoregulation in cold water. The results presented here provide valuable new insight into open ocean habitat use by mature, female white sharks that may be applicable to other large pelagic predators.
    Description: This work was supported by the WHOI Ocean Life Institute and awards from NASA and NSF.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
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    Integrating archival tag data and a high-resolution oceanographic model to estimate basking shark (Cetorhinus maximus) movements in the western Atlantic (2018)
    Frontiers Media
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 25, doi:10.3389/fmars.2018.00025.
    Description: Basking shark (Cetorhinus maximus) populations are considered “vulnerable” globally and “endangered” in the northeast Atlantic by the International Union for the Conservation of Nature (IUCN). Much of our knowledge of this species comes from surface observations in coastal waters, yet recent evidence suggests the majority of their lives may be spent in the deep ocean. Depth preferences of basking sharks have significantly limited movement studies that used pop-up satellite archival transmitting (PSAT) tags as conventional light-based geolocation is impossible for tagged animals that spend significant time below the photic zone. We tagged 57 basking sharks with PSAT tags in the NW Atlantic from 2004 to 2011. Many individuals spent several months at meso- and bathy-pelagic depths where accurate light-level geolocation was impossible during fall, winter and spring. We applied a newly-developed geolocation approach for the PSAT data by comparing three-dimensional depth-temperature profile data recorded by the tags to modeled in situ oceanographic data from the high-resolution HYbrid Coordinate Ocean Model (HYCOM). Observation-based likelihoods were leveraged within a state-space hidden Markov model (HMM). The combined tracks revealed that basking sharks moved from waters around Cape Cod, MA to as far as the SE coast of Brazil (20°S), a total distance of over 17,000 km. Moreover, 59% of tagged individuals with sufficient deployment durations (〉250 days) demonstrated seasonal fidelity to Cape Cod and the Gulf of Maine, with one individual returning to within 60 km of its tagging location 1 year later. Tagged sharks spent most of their time at epipelagic depths during summer months around Cape Cod and in the Gulf of Maine. During winter months, sharks spent extended periods at depths of at least 600 m while moving south to the Sargasso Sea, the Caribbean Sea, or the western tropical Atlantic. Our work demonstrates the utility of applying advances in oceanographic modeling to understanding habitat use of highly migratory, often meso- and bathy-pelagic, ocean megafauna. The large-scale movement patterns of tagged sharks highlight the need for international cooperation when designing and implementing conservation strategies to ensure that the species recovers from the historical effects of over-fishing throughout the North Atlantic Ocean.
    Description: We gratefully acknowledge funding from the US National Science Foundation (OCE 0825148), the National Aeronautics and Space Administration (NNS06AA96G), the Massachusetts Environmental Trust, and the Federal Aid in Sport Fish Restoration Program. CB was funded by the Martin Family Society of Fellows for Sustainability Fellowship at the Massachusetts Institute of Technology, the Grassle Fellowship and Ocean Venture Fund at the Woods Hole Oceanographic Institution, and the NASA Earth and Space Science Fellowship. Funding for the development of HYCOM has been provided by the National Ocean Partnership Program and the Office of Naval Research.
    Keywords: Movement ecology ; Satellite archival telemetry ; Migration ; Mesopelagic ; Oceanographic modeling ; Site fidelity
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Carbon and nitrogen isotope fractionation of amino acids in an avian marine predator, the gentoo penguin (Pygoscelis papua) (2015)
    John Wiley & Sons
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecology and Evolution 5 (2015): 1278–1290, doi:10.1002/ece3.1437.
    Description: Compound-specific stable isotope analysis (CSIA) of amino acids (AA) has rapidly become a powerful tool in studies of food web architecture, resource use, and biogeochemical cycling. However, applications to avian ecology have been limited because no controlled studies have examined the patterns in AA isotope fractionation in birds. We conducted a controlled CSIA feeding experiment on an avian species, the gentoo penguin (Pygoscelis papua), to examine patterns in individual AA carbon and nitrogen stable isotope fractionation between diet (D) and consumer (C) (Δ13CC-D and Δ15NC-D, respectively). We found that essential AA δ13C values and source AA δ15N values in feathers showed minimal trophic fractionation between diet and consumer, providing independent but complimentary archival proxies for primary producers and nitrogen sources respectively, at the base of food webs supporting penguins. Variations in nonessential AA Δ13CC-D values reflected differences in macromolecule sources used for biosynthesis (e.g., protein vs. lipids) and provided a metric to assess resource utilization. The avian-specific nitrogen trophic discrimination factor (TDFGlu-Phe = 3.5 ± 0.4‰) that we calculated from the difference in trophic fractionation (Δ15NC-D) of glutamic acid and phenylalanine was significantly lower than the conventional literature value of 7.6‰. Trophic positions of five species of wild penguins calculated using a multi-TDFGlu-Phe equation with the avian-specific TDFGlu-Phe value from our experiment provided estimates that were more ecologically realistic than estimates using a single TDFGlu-Phe of 7.6‰ from the previous literature. Our results provide a quantitative, mechanistic framework for the use of CSIA in nonlethal, archival feathers to study the movement and foraging ecology of avian consumers.
    Description: This research was funded by National Science Foundation Office of Polar Programs [grants ANT-0125098, ANT-0739575] and the 2013 Antarctic Science Bursaries.
    Keywords: Amino acid ; Avian ; Compound-specific stable isotope analysis ; Diet ; Fractionation ; Penguin ; Trophic position
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 4
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    Coral reef fish populations can persist without immigration (2016)
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    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of The Royal Society for personal use, not for redistribution. The definitive version was published in Proceedings of the Royal Society B: Biological Sciences, 282 (2015): 20151311, doi:10.1098/rspb.2015.1311.
    Description: Determining the conditions under which populations may persist requires accurate estimates of demographic parameters, including immigration, local reproductive success, and mortality rates. In marine populations, empirical estimates of these parameters are rare, due at least in part to the pelagic dispersal stage common to most marine organisms. Here, we evaluate population persistence and turnover for a population of orange clownfish, Amphiprion percula, at Kimbe Island in Papua New Guinea. All fish in the population were sampled and genotyped on five occasions at 2-year intervals spanning eight years. The genetic data enabled estimates of reproductive success retained in the same population (reproductive success to self-recruitment), reproductive success exported to other subpopulations (reproductive success to local connectivity), and immigration and mortality rates of sub-adults and adults. Approximately 50% of the recruits were assigned to parents from the Kimbe Island population and this was stable through the sampling period. Stability in the proportion of local and immigrant settlers is likely due to: low annual mortality rates and stable egg production rates, and the short larval stages and sensory capacities of reef fish larvae. Biannual mortality rates ranged from 0.09 to 0.55 and varied significantly spatially. We used these data to parameterize a model that estimated the probability of the Kimbe Island population persisting in the absence of immigration. The Kimbe Island population was found to persist without significant immigration. Model results suggest the island population persists because the largest of the subpopulations are maintained due to having low mortality and high self-recruitment rates. Our results enable managers to appropriately target and scale actions to maximize persistence likelihood as disturbance frequencies increase.
    Description: This research was supported by LABEX Corail, ERC, CRISP, the GEF CRTR Connectivity Working Group, NSF, the ARC CoE Coral Reef Studies, TNC, Total Foundation, JCU, KAUST, and WHOI.
    Description: 2016-11-18
    Keywords: Amphiprion percula ; Long-term monitoring ; Parentage analysis ; Self-recruitment ; Population demography ; Persistence
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 5
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    First genealogy for a wild marine fish population reveals multi-generational philopatry (2016)
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    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2016. This is the author's version of the work. It is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 113 (2016): 13245-13250, doi: 10.1073/pnas.1611797113.
    Description: Natal philopatry — the return of individuals to their natal area for reproduction — has advantages and disadvantages for animal populations. Natal philopatry may generate local genetic adaptation but may also increase the probability of inbreeding that can compromise persistence. While natal philopatry is well documented in anadromous fishes, marine fish may also return to their birth site to spawn. How philopatry shapes wild fish populations is, however, unclear because it requires constructing multi-generational pedigrees that are currently lacking for marine fishes. Here we present the first multi-generational pedigree for a marine fish population by repeatedly genotyping all individuals in a population of the orange clownfish (Amphiprion percula) at Kimbe Island (Papua New Guinea) over a 10-year period. Based on 2927 individuals, our pedigree analysis revealed that longitudinal philopatry was recurrent over five generations. Progeny tended to settle close to their parents, with related individuals often sharing the same colony. However, successful inbreeding was rare and genetic diversity remained high, suggesting occasional inbreeding does not impair local population persistence. Local reproductive success was dependent on the habitat larvae settled into, rather than the habitat they came from. Our study suggests that longitudinal philopatry can influence both population replenishment and local adaptation of marine fishes. Resolving multi-generational pedigrees over a relatively short time period, as we present here, provides a framework for assessing the ability of marine populations to persist and adapt to accelerating climate change.
    Description: This research was supported by LABEX Corail, ERC, CRISP, the GEF CRTR Connectivity Working Group, NSF, the ARC CoE Coral Reef Studies, TNC, Total Foundation, JCU, KAUST, and WHOI.
    Keywords: Amphiprion percula ; Self-recruitment ; Multi-generational pedigree ; Inbreeding ; Parental effects
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 6
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    HMMoce : an R package for improved geolocation of archival-tagged fishes using a hidden Markov method (2018)
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2017. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Methods in Ecology and Evolution 9 (2018): 1212-1220, doi:10.1111/2041-210X.12959.
    Description: Electronic tagging of marine fishes is commonly achieved with archival tags that rely on light levels and sea surface temperatures to retrospectively estimate movements. However, methodological issues associated with light-level geolocation have constrained meaningful inference to species where it is possible to accurately estimate time of sunrise and sunset. Most studies have largely ignored the oceanographic profiles collected by the tag as a potential way to refine light-level geolocation estimates. Open-source oceanographic measurements and outputs from high-resolution models are increasingly available and accessible. Temperature and depth profiles recorded by electronic tags can be integrated with these empirical data and model outputs to construct likelihoods and improve geolocation estimates. The R package HMMoce leverages available tag and oceanographic data to improve position estimates derived from electronic tags using a hidden Markov approach. We illustrate the use of the model and test its performance using example blue and mako shark archival tag data. Model results were validated using independent, known tracks and compared to results from other geolocation approaches. HMMoce exhibited as much as 6-fold improvement in pointwise error as compared to traditional light-level geolocation approaches. The results demonstrated the general applicability of HMMoce to marine animals, particularly those that do not frequent surface waters during crepuscular periods.
    Description: This work was funded by awards to C. Braun from the Martin Family Society of Fellows for Sustainability Fellowship at the Massachusetts Institute of Technology, the Grassle Fellowship and Ocean Venture Fund at the Woods Hole Oceanographic Institution, and the NASA Earth and Space Science Fellowship.
    Keywords: Satellite telemetry ; Movement ecology ; Oceanography ; State-space model ; Behavioral state
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 7
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    Spatial and isotopic niche partitioning during winter in chinstrap and Adélie penguins from the South Shetland Islands (2015)
    Ecological Society of America
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 6 (2015): art125, doi:10.1890/ES14-00287.1.
    Description: Closely related species with similar ecological requirements should exhibit segregation along spatial, temporal, or trophic niche axes to limit the degree of competitive overlap. For migratory marine organisms like seabirds, assessing such overlap during the non-breeding period is difficult because of long-distance dispersal to potentially diffuse foraging habitats. Miniaturization of geolocation devices and advances in stable isotope analysis (SIA), however, provide a robust toolset to quantitatively track the movements and foraging niches of wide ranging marine animals throughout much of their annual cycle. We used light-based geolocation tags and analyzed stable carbon and nitrogen isotopes from tail feathers to simultaneously characterize winter movements, habitat utilization, and overlap of spatial and isotopic niches of migratory chinstrap (Pygoscelis antarctica) and Adélie (P. adeliae) penguins during the austral winter of 2012. Chinstrap penguins exhibited a higher diversity of movements and occupied portions of the Southern Ocean from 138° W to 30° W within a narrow latitudinal band centered on 60° S. In contrast, all tracked Adélie penguins exhibited smaller-scale movements into the Weddell Sea and then generally along a counter-clockwise path as winter advanced. Inter-specific overlap during the non-breeding season was low except during the months immediately adjacent to the summer breeding season. Intra-specific overlap by chinstraps from adjacent breeding colonies was higher throughout the winter. Spatial segregation appears to be the primary mechanism to maintain inter- and intra-specific niche separation during the non-breeding season for chinstrap and Adélie penguins. Despite low spatial overlap, however, the data do suggest that a narrow pelagic corridor in the southern Scotia Sea hosted both chinstrap and Adélie penguins for most months of the year. Shared occupancy and similar isotopic signatures of the penguins in that region suggests that the potential for inter-specific competition persists during the winter months. Finally, we note that SIA was able to discriminate eastward versus westward migrations in penguins, suggesting that SIA of tail feathers may provide useful information on population-level distribution patterns for future studies.
    Description: Funds for the GLS tags were provided by the National Marine Sanctuary Foundation. Additional support for this project was provided by a Woods Hole Oceanographic Devonshire Scholarship as well as funding from the Ocean Life Institute and SeaWorld Bush Gardens Conservation Fund to MJP.
    Keywords: Antarctica ; Geolocation ; Migration ; Niche ; Pygoscelis adeliae ; Pygoscelis antarctica ; Stable isotope ; Winter
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
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    Homogeneity of coral reef communities across 8 degrees of latitude in the Saudi Arabian Red Sea (2015)
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    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Marine Pollution Bulletin 105 (2016): 558-565, doi:10.1016/j.marpolbul.2015.11.024.
    Description: Coral reef communities between 26.8°N and 18.6°N latitude in the Saudi Arabian Red Sea were surveyed to provide baseline data and an assessment of fine-scale biogeography of communities in this region. Forty reefs along 1100 km of coastline were surveyed using depth-stratified visual transects of fish and benthic communities. Fish abundance and benthic cover data were analyzed using multivariate approaches to investigate whether coral reef communities differed with latitude. A total of 215 fish species and 90 benthic categories were recorded on the surveys. There were no significant differences among locations in fish abundance, species richness, or among several diversity indices. Despite known environmental gradients within the Red Sea, the communities remained surprisingly similar. The communities do, however, exhibit subtle changes across this span of reefs that likely reflect the constrained distributions of several species of reef fish and benthic fauna.
    Description: This research was supported by a KAUST Competitive Research Grant (URF/1/1389-01-01) and baseline research funds to MLB, as well as WHOI-KAUST Special Partnership Awards (USA-00002 and KSA-00011) to SRT.
    Keywords: Benthic cover ; Biogeography ; Coral reef fishes ; Dissimilarity ; Red Sea
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 9
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    Movements of the reef manta ray (Manta alfredi) in the Red Sea using satellite and acoustic telemetry (2016)
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    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in Marine Biology 162 (2015): 2351-2362, doi:10.1007/s00227-015-2760-3.
    Description: Populations of mobulid rays are declining globally through a combination of directed fisheries and indirect anthropogenic threats. Understanding the movement ecology of these rays remains an important priority for devising appropriate conservation measures throughout the world’s oceans. We sought to determine manta movements across several temporal and spatial scales with a focus on quantifying site fidelity and seasonality in the northern Farasan Banks, Red Sea. We fitted manta rays with acoustic transmitters (n = 9) and popup satellite archival transmitting (PSAT) tags (n = 9), including four with GPS capability (Fastloc), during spring 2011 and 2012. We deployed an extensive array of acoustic receivers (n = 67) to record movements of tagged mantas in the study area. All acoustically tagged individuals travelled frequently among highuse receiver locations and reefs and demonstrated fidelity to specific sites within the array. Estimated and realized satellite tag data indicated regional movements 〈200 km from the tagging location, largely coastal residency, and high surface occupation. GPStagged individuals regularly moved within the coastal reef matrix up to ~70 km to the south but continued to return to the tagging area near the highoccupancy sites identified in the acoustic array. We also tested the accuracy of several geolocation models to determine the best approach to analyze our lightbased satellite tag data. We documented significant errors in lightbased movement estimates that should be considered when interpreting tracks derived from lightlevel geolocation, especially for animals with restricted movements through a homogenous temperature field. Despite some error in satellite tag positions, combining results from PSAT and acoustic tags in this study yielded a comprehensive representation of manta spatial ecology across several scales, and such approaches will, in the future, inform the design of appropriate management strategies for manta rays in the Red Sea and tropical regions worldwide.
    Description: Financial support was provided in part by KAUST baseline research funds (to MLB), KAUST award nos. USA00002 and KSA 00011 (to SRT), and the U.S. National Science Foundation (OCE 0825148 to SRT and GBS).
    Description: 2016-10-27
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 10
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    Environmentally mediated trends in otolith composition of juvenile Atlantic cod (Gadus morhua) (2016)
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    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in ICES Journal of Marine Science 72 (2015): 2350-2363, doi: 10.1093/icesjms/fsv070.
    Description: We evaluated the influence of environmental exposure of juvenile Atlantic cod (Gadus morua) to inform interpretations of natal origins and movement patterns using otolith geochemistry. Laboratory rearing experiments were conducted with a variety of temperature (~ 5, 8.5 and 12 °C) and salinity (~ 25, 28.5 and 32 PSU) combinations. We measured magnesium (Mg), manganese (Mn), strontium (Sr) and barium (Ba), expressed as a ratio to calcium (Ca), using laser ablation inductively coupled plasma mass spectrometry (ICP-MS), and stable carbon (δ13C) and oxygen (δ18O) isotopes using isotope ratio monitoring mass spectrometry. Temperature and salinity significantly affected all elements and isotopes measured, with the exception of salinity on Mg:Ca. We detected significant interactions among temperature and salinity for Mn:Ca and Ba:Ca partition coefficients (ratio of otolith chemistry to water chemistry), with significant temperature effects only detected in the 32 and 28.5 PSU salinity treatments. Similarly, we detected a significant interaction between temperature and salinity in incorporation of δ13C, with a significant temperature effect except at intermediate salinity. These results support the contention that environmental mediation of otolith composition varies among species, thus limiting the ability of generalized models to infer life history patterns from chemistry. Our results provide essential baseline information detailing environmental influence on juvenile Atlantic cod otolith composition, punctuating the importance of laboratory validations to translate species-specific otolith composition when inferring in situ life histories and movements.
    Description: Research funding and support was provided by a Natural Sciences and Engineering Research Council of Canada (NSERC) Strategic Grant on Connectivity in Marine Fishes. R. Stanley was supported by an NSERC Postgraduate Scholarship and a Research and Development Corporation of Newfoundland (RDC) student fellowship.
    Description: 2016-04-26
    Keywords: Otolith chemistry ; Temperature ; Salinity ; Gadus morhua ; Elemental fingerprinting ; Isotopes
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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