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  • Articles  (391)
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  • 11
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    Unknown
    Wiley-Blackwell
    In: Yeast
    Publication Date: 2018-01-17
    Description: No abstract is available for this article.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
    Published by Wiley-Blackwell
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  • 12
    Publication Date: 2018-01-12
    Description: Erythritol is a four-carbon sugar alcohol produced by microorganisms as an osmoprotectant. It could be used as a natural sweetener in the pharmaceutical and food industries. Here, a snapshot on current knowledge on erythritol metabolism and synthesis, optimization of its production, more precisely process and producer strain improvement is presented.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
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  • 13
    Publication Date: 2018-01-12
    Description: Meiotic drivers are selfish DNA loci that can bias their own transmission into gametes. Due to their transmission advantages, meiotic drivers can spread in populations even if the drivers or linked variants decrease organismal fitness. Meiotic drive was first formally described in the 1950s and is thought to be a powerful force shaping eukaryotic genomes. Classic genetic analyses have detected the action of meiotic drivers in plants, filamentous fungi, insects, and vertebrates. Several of these drive systems have limited experimental tractability and relatively little is known about the molecular mechanisms of meiotic drive. Recently, however, meiotic drivers were discovered in a yeast species. The Schizosaccharomyces pombe wtf gene family contains several active meiotic drive genes. This review summarizes what is known about the wtf family and highlights its potential as a highly tractable experimental model for molecular and evolutionary characterization of meiotic drive.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
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  • 14
    Publication Date: 2018-01-12
    Description: One of the fundamental question in biology is how the genotype regulates the phenotype. An increasing number of studies indicate that in most cases, the effect of a genetic locus on the phenotype is context-dependent, i.e. it is influenced by the genetic background and the environment in which the phenotype is measured. Still, the majority of the studies, in both model organisms and humans, that map the genetic regulation of phenotypic variation in complex traits primarily identify additive loci with independent effects. This does not reflect an absence of the contribution of genetic interactions to phenotypic variation, but instead is a consequence of the technical limitations in mapping gene-gene interactions (GGI) and gene-environment interactions (GEI). Yeast, with its detailed molecular understanding, diverse population genomics, and ease of genetic manipulation, is a unique and powerful resource to study the contributions of GGI and GEI in the regulation of phenotypic variation. Here we review studies in yeast that have identified GGI and GEI that regulate phenotypic variation, and discuss the contribution of these findings in explaining missing heritability of complex traits, and how observations from these GGI and GEI studies enhance our understanding of the mechanisms underlying genetic robustness and adaptability that shape the architecture of the genotype-phenotype map.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
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  • 15
    Publication Date: 2018-01-11
    Description: Online sequence databases such as NCBI GenBank serve as a tremendously useful platform for researchers to share and reuse published data. However, submission systems lack control for errors such as organism misidentification, which once entered in the database can be propagated and mislead downstream analyses. Here we present an illustrating case of misidentification of Candida albicans from a clinical sample as Naumovozyma dairenensis based on whole-genome shotgun data. Analyses of phylogenetic markers, read mapping and single nucleotide polymorphisms (SNP) served to correct the identification. We propose that the routine use of some of such analyses could help to detect misidentifications arising from unsupervised analyses and correct them before they enter the databases. Finally, we discuss broader implications of such misidentifications and the difficulty of correcting them once they are in the records.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
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  • 16
    Publication Date: 2017-12-27
    Description: Pichia pastoris expression system has been widely used in recombinant protein production. So far the majority of heterologous proteins are expressed by methanol inducible promoter P AOX1 and constitutive promoter P GAP . The use of other promoters is rather limited. Here we selected 16 potentially efficient and regulatory promoter candidates based on the RNA-seq and RNA folding free energy Δ G data. GFP and recombinant amylase were inserted after these promoters to reveal their strength and efficiency under different carbon sources and culture scales. Two novel promoters were successfully identified and could possibly be applied in recombinant protein expression: the methanol inducible promoter P 0547 and the constitutive promoter P 0472 .
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
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  • 17
    Publication Date: 2017-12-27
    Description: Diet plays a key role in determining the longevity of the organisms since it has been demonstrated that glucose restriction increases lifespan whereas a high-glucose diet decreases it. However, the molecular basis of how diet leads to the aging process is currently unknown. We propose that the quantity of glucose that fuels respiration influences ROS generation and glutathione levels, and both chemical species impact in the aging process. Herein, we provide evidence that mutation of the gene GSH1 in S. cerevisiae diminishes glutathione levels. Moreover, glutathione levels were higher with 0.5% than in 10% glucose in the gsh1Δ and WT strains. Interestingly, the chronological life span (CLS) was lowered in the gsh1Δ strain cultured with 10% glucose but not under dietary restriction. The gsh1Δ strain also showed an inhibition of the mitochondrial respiration in 0.5 and 10% of glucose but only increased the H 2 O 2 levels under dietary restriction. These results correlate well with the GSH/GSSG ratio, which showed a decrease in gsh1Δ strain cultured with 0.5% glucose. Together, these data indicate that glutathione exhaustion impact negatively both the electron transport chain function and the CLS of yeast, the latter occurring when a low threshold level of this antioxidant is reached, independently of the H 2 O 2 levels.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
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  • 18
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    Wiley-Blackwell
    In: Yeast
    Publication Date: 2017-12-17
    Description: Genome editing is a form of highly precise genetic engineering which produces alterations to an organism's genome as small as a single base pair with no incidental or auxiliary modifications; this technique is crucial to the field of synthetic biology, which requires such precision in the installation of novel genetic circuits into host genomes. While a new methodology for most organisms, genome editing capabilities have been used in the budding yeast Saccharomyces cerevisiae for decades. In this review, I will present a brief history of genome editing in S. cerevisiae , discuss the current gold standard method of Cas9-mediated genome editing (CMGE), and speculate on future directions of the field.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
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  • 19
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    Wiley-Blackwell
    In: Yeast
    Publication Date: 2017-12-05
    Description: No abstract is available for this article.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
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  • 20
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    Wiley-Blackwell
    In: Yeast
    Publication Date: 2017-12-05
    Description: No abstract is available for this article.
    Print ISSN: 0749-503X
    Electronic ISSN: 1097-0061
    Topics: Biology
    Published by Wiley-Blackwell
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