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  • phylogeny  (4)
  • 03. Hydrosphere::03.02. Hydrology::03.02.03. Groundwater processes  (2)
  • 2010-2014  (2)
  • 2005-2009  (4)
  • 1
    Publication Date: 2024-01-12
    Description: Three species of Mycosphaerella, namely M. eumusae, M. fijiensis, and M. musicola are involved in the Sigatoka disease complex of bananas. Besides these three primary pathogens, several additional species of Mycosphaerella or their anamorphs have been described from Musa. However, very little is known about these taxa, and for the majority of these species no culture or DNA is available for study. In the present study, we collected a global set of Mycosphaerella strains from banana, and compared them by means of morphology and a multi-gene nucleotide sequence data set. The phylogeny inferred from the ITS region and the combined data set containing partial gene sequences of the actin gene, the small subunit mitochondrial ribosomal DNA and the histone H3 gene revealed a rich diversity of Mycosphaerella species on Musa. Integration of morphological and molecular data sets confirmed more than 20 species of Mycosphaerella (incl. anamorphs) to occur on banana. This study reconfirmed the previously described presence of Cercospora apii, M. citri and M. thailandica, and also identified Mycosphaerella communis, M. lateralis and Passalora loranthi on this host. Moreover, eight new species identified from Musa are described, namely Dissoconium musae, Mycosphaerella mozambica, Pseudocercospora assamensis, P. indonesiana, P. longispora, Stenella musae, S. musicola, and S. queenslandica.
    Keywords: Mycosphaerella ; phylogeny ; Sigatoka disease complex ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 2
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    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 22 no. 1, pp. 95-110
    Publication Date: 2024-01-12
    Description: During large-scale surveys for soilborne Phytophthora species in forests and semi-natural stands and nurseries in Europe during the last decade, homothallic Phytophthora isolates with paragynous antheridia, semipapillate persistent sporangia and a growth optimum around 25 \xc2\xb0C which did not form catenulate hyphal swellings, were recovered from 39 host species in 16 families. Based on their morphological and physiological characters and the similarity of their ITS DNA sequences with P. citricola as designated on GenBank, these isolates were routinely identified as P. citricola. In this study DNA sequence data from the internal transcribed spacer regions (ITS1 and ITS2) and 5.8S gene of the rRNA operon, the mitochondrial cox1 and \xce\xb2-tubulin genes were used in combination with morphological and physiological characteristics to characterise these isolates and compare them to the ex-type and the authentic type isolates of P. citricola, and two other taxa of the P. citricola complex, P. citricola I and the recently described P. multivora. Due to their unique combination of morphological, physiological and molecular characters these semipapillate homothallic isolates are described here as a new species, P. plurivora sp. nov.
    Keywords: Beech ; citricola ; decline ; dieback ; forest ; multivora ; nursery ; oak ; phylogeny
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 3
    Publication Date: 2024-01-12
    Description: A new Phytophthora species, isolated from rhizosphere soil of declining or dead trees of Eucalyptus gomphocephala, E. marginata, Agonis flexuosa, and another 13 plant species, and from fine roots of E. marginata and collar lesions of Banksia attenuata in Western Australia, is described as Phytophthora multivora sp. nov. It is homothallic and produces semipapillate sporangia, smooth-walled oogonia containing thick-walled oospores, and paragynous antheridia. Although morphologically similar to P. citricola, phylogenetic analyses of the ITS and cox1 gene regions demonstrate that P. multivora is unique. Phytophthora multivora is pathogenic to bark and cambium of E. gomphocephala and E. marginata and is believed to be involved in the decline syndrome of both eucalypt species within the tuart woodland in south-west Western Australia.
    Keywords: Decline ; dieback ; forest ; jarrah ; phylogeny ; Phytophthora citricola ; tuart
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 4
    Publication Date: 2024-01-12
    Description: During surveys of dying vegetation in natural ecosystems and associated waterways in Australia many new taxa have been identified from Phytophthora ITS Clade 6. For representative isolates, the region spanning the internal transcribed spacer region of the ribosomal DNA, the nuclear gene encoding heat shock protein 90 and the mitochondrial cox1 gene were PCR amplified and sequenced. Based on phylogenetic analysis and morphological and physiological comparison, four species and one informally designated taxon have been described; Phytophthora gibbosa, P. gregata, P. litoralis, P. thermophila and P. taxon paludosa. Phytophthora gibbosa, P. gregata and P. taxon paludosa form a new cluster and share a common ancestor; they are homothallic and generally associated with dying vegetation in swampy or water-logged areas. Phytophthora thermophila and P. litoralis are sister species to each other and more distantly to P. gonapodyides. Both new species are common in waterways and cause scattered mortality within native vegetation. They are self-sterile and appear well adapted for survival in an aquatic environment and inundated soils, filling the niche occupied by P. gonapodyides and P. taxon salixsoil in the northern hemisphere. Currently the origin of these new taxa, their pathogenicity and their role in natural ecosystems are unknown. Following the precautionary principle, they should be regarded as a potential threat to native ecosystems and managed to minimise their further spread.
    Keywords: Aquatic habitat ; breeding systems ; evolution ; phylogeny ; radiation ; sterility ; survival
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 5
    Publication Date: 2017-04-04
    Description: The coastal karstic aquifer of Mt. Oyramanges (1864 m asl) is located in the Vlora Bay, along the Adriatic coast. The quality of the spring water there is so high that it is used to supply the drinking supply of the second largest Albanian town, Vlora. Starting from a geological and tectonic conceptualization of the area, a GIS approach based on long-term rainfall, temperature and river yield time series has been used to define hydrologic balance. The assessment of recharge and the measurement of sub-aerial spring discharge permit the rough assessment of submarine groundwater discharge. The definition of the flow domain and of groundwater chemical features is pursued with an on-going survey which includes chemical and isotopic analyses of rainfall, groundwater and sea water.
    Description: Published
    Description: Naples, Florida (USA)
    Description: open
    Keywords: Aquifer ; groundwater ; gis ; Albania ; 03. Hydrosphere::03.02. Hydrology::03.02.03. Groundwater processes
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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  • 6
    Publication Date: 2017-04-04
    Description: Population growth, urbanization and global climate change have increased urban and agricultural water demands, stressing aquifer systems where groundwater is a source of water supply. The availability and utility of groundwater may further be threatened by factors stressing the quality of groundwater, such as industrial and domestic wastes and agricultural intensification. Consequences include, for example, over-allocation of groundwater, groundwater overdraft, declining well yields and land subsidence; degraded groundwater quality due to mobilization of natural pollutants (arsenic), salt contamination caused by seawater intrusion; increased demand for conjunctively used surface water, and resulting conflicts with junior users; and streamflow capture and resulting damage to ecosystems. These consequences may occur incrementally and inequitably across an aquifer. Natural environmental problems can further complicate use of groundwater and increase strain on the aquifer system; for example, underground structures, geothermal heating (such as heat islands), and geochemical evolution (such as karst formation, excessive salinity, acidity, fluoride, radioactivity, hardness, or turbidity). To address this issue, a joint symposium on the Trends and Sustainability of Groundwater in Highly Stressed Aquifers was held during the 8th Scientific Assembly of the International Association of Hydrological Sciences, IAHS, and the 37th Congress of the International Association of Hydrogeology, IAH, in Hyderabad, India, September 2009. The symposium was organized by the IAHS International Commission on Groundwater (ICGW), supported IAH and by the IAHS International Commission on Water Quality (ICWQ). This symposium brought together scientists, including modellers, geochemists and hydro-geologists, with water supply managers and policy makers to discuss scientific and management ideas and approaches for improving the sustainability of highly stressed aquifers. The importance of this topic was reflected in the large number of contributions to the symposium. Selected papers from this symposium have been compiled in this volume. The editors gratefully acknowledge the assistance of the reviewers who made valuable contributions to this volume. We thank Penny Perrins and Cate Gardner from IAHS Press for their professional approach and help with the processing of the manuscripts.
    Description: Published
    Description: V
    Description: open
    Keywords: goundwater ; 03. Hydrosphere::03.02. Hydrology::03.02.03. Groundwater processes
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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