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  • Journals
  • Articles  (7)
  • Data
  • Open Access-Papers  (7)
  • Kalimantan  (2)
  • evolution  (2)
  • 01. Atmosphere::01.02. Ionosphere::01.02.06. Instruments and techniques  (1)
  • Ophiostomatales
  • Scientific collections
  • 2010-2014  (6)
  • 2000-2004  (1)
  • 1975-1979
  • 1
    Publication Date: 2017-04-04
    Description: Biomass burning emissions factors are vital to quantifying trace gas release from vegetation fires. Here we evaluate emissions factors for a series of savannah fires in Kruger National Park (KNP), South Africa using ground-based open path Fourier transform infrared (FTIR) spectroscopy and an IR source separated by 150–250 m distance. Molecular abundances along the extended open path are retrieved using a spectral forward model coupled to a non-linear least squares fitting approach. We demonstrate derivation of trace gas column amounts for horizontal paths transecting the width of the advected plume, and find for example that CO mixing ratio changes of ~0.01 μmol mol−1 [10 ppbv] can be detected across the relatively long optical paths used here. Though FTIR spectroscopy can detect dozens of different chemical species present in vegetation fire smoke, we focus our analysis on five key combustion products released preferentially during the pyrolysis (CH2O), flaming (CO2) and smoldering (CO, CH4, NH3) processes. We demonstrate that well constrained emissions ratios for these gases to both CO2 and CO can be derived for the backfire, headfire and residual smouldering combustion (RSC) stages of these savannah fires, from which stage-specific emission factors can then be calculated. Headfires and backfires often show similar emission ratios and emission factors, but those of the RSC stage can differ substantially. The timing of each fire stage was identified via airborne optical and thermal IR imagery and ground-observer reports, with the airborne IR imagery also used to derive estimates of fire radiative energy (FRE), allowing the relative amount of fuel burned in each stage to be calculated and "fire averaged" emission ratios and emission factors to be determined. These "fire averaged" metrics are dominated by the headfire contribution, since the FRE data indicate that the vast majority of the fuel is burned in this stage. Our fire averaged emission ratios and factors for CO2 and CH4 agree well with those from prior studies conducted in the same area using e.g. airborne plume sampling. We also concur with past suggestions that emission factors for formaldehyde in this environment appear substantially underestimated in widely used databases, but see no evidence to support suggestions by Sinha et al. (2003) of a major overestimation in the emission factor of ammonia in works such as Andreae and Merlet (2001) and Akagi et al. (2011). We also measure somewhat higher CO and NH3 emission ratios and factors than are usually reported for this environment, which is interpreted to result from the OP-FTIR ground-based technique sampling a greater proportion of smoke from smouldering processes than is generally the case with methods such as airborne sampling. Finally, our results suggest that the contribution of burning animal (elephant) dung can be a significant factor in the emissions characteristics of certain KNP fires, and that the ability of remotely sensed fire temperatures to provide information useful in tailoring modified combustion efficiency (MCE) and emissions factor estimates maybe rather limited, at least until the generally available precision of such temperature estimates can be substantially improved. One limitation of the OP-FTIR method is its ability to sample only near-ground level smoke, which may limit application at more intense fires where the majority of smoke is released into a vertically rising convection column. Nevertheless, even in such cases the method potentially enables a much better assessment of the emissions contribution of the RSC stage than is typically conducted currently.
    Description: Published
    Description: 11591-11615
    Description: 1.10. TTC - Telerilevamento
    Description: JCR Journal
    Description: open
    Keywords: X-ray computed microtomography ; preferred orientation ; texture analysis ; volcanic scoria ; synchrotron X-rays ; pumice ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate ; 01. Atmosphere::01.01. Atmosphere::01.01.05. Radiation ; 01. Atmosphere::01.02. Ionosphere::01.02.06. Instruments and techniques
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
    Publication Date: 2024-01-12
    Description: Coral reefs in Jakarta Bay have been subjected to scientific studies since the 1920s. Also from that time on biological collections were made. The reefs in the Jakarta Bay have been under long-term natural and anthropogenic stress. With the biological collections and historical documents the coral species richness in Jakarta Bay around 1920 was reconstructed. New data from this bay and the adjacent offshore Thousand Islands archipelago were obtained during a 2005 research expedition. A comparison of the coral assemblages between 1920 and 2005 reveals a clear decline in species numbers. The most prominent results include the near-shore disappearance of species belonging to the families Acroporidae, Milleporidae, and to a lesser extent Poritidae. The overall coral species composition of the reefs has changed considerably, which is partly reflected in a strong decline in coral species richness. About half the number of species recorded in 1920 was found again in 2005.
    Keywords: Biodiversity change ; Global change ; Kepulauan Seribu ; Reef degradation ; Scientific collections ; Scleractinia
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 3
    Publication Date: 2024-01-12
    Description: The coastal waters of East Kalimantan are part of the western boundary of the Indo-West Pacific centre of maximum marine biodiversity. During the pilot phase of the East Kalimantan Program (EKP) this has been tested by various specialists who used model taxa to test this hypothesis. Emphasis has been put on the species-rich coral reefs and islands that show reef communities in association with mangroves, seagrass, and algae. A range of habitats has been surveyed, varying in distance offshore (with decreasing salinity, turbidity, sedimentation and nutrient load): fringing reefs along the mainland shore, offshore patch reefs, delta-front barrier reefs, and uplifted atolls. The atolls consist of limestone rock and contain shallow enclosed marine lakes with a unique marine biota. The various marine environments at NE Kalimantan have enabled the selection of taxa and sites that can be used for future research on climate change records (e.g. corals, sponges and molluscs), molecular (genetic) divergence within species between separated populations, and environmental effects on species diversity. The biodiversity data will be important for the design of Marine Protected Areas (MPAs) and as an instrument in raising public awareness regarding the sustainable use of the natural resources, such as through fisheries and diving tourism.
    Keywords: Marine biodiversity ; Berau region ; Kalimantan ; Indonesia
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/other
    Format: application/pdf
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  • 4
    Publication Date: 2024-01-12
    Description: During surveys of dying vegetation in natural ecosystems and associated waterways in Australia many new taxa have been identified from Phytophthora ITS Clade 6. For representative isolates, the region spanning the internal transcribed spacer region of the ribosomal DNA, the nuclear gene encoding heat shock protein 90 and the mitochondrial cox1 gene were PCR amplified and sequenced. Based on phylogenetic analysis and morphological and physiological comparison, four species and one informally designated taxon have been described; Phytophthora gibbosa, P. gregata, P. litoralis, P. thermophila and P. taxon paludosa. Phytophthora gibbosa, P. gregata and P. taxon paludosa form a new cluster and share a common ancestor; they are homothallic and generally associated with dying vegetation in swampy or water-logged areas. Phytophthora thermophila and P. litoralis are sister species to each other and more distantly to P. gonapodyides. Both new species are common in waterways and cause scattered mortality within native vegetation. They are self-sterile and appear well adapted for survival in an aquatic environment and inundated soils, filling the niche occupied by P. gonapodyides and P. taxon salixsoil in the northern hemisphere. Currently the origin of these new taxa, their pathogenicity and their role in natural ecosystems are unknown. Following the precautionary principle, they should be regarded as a potential threat to native ecosystems and managed to minimise their further spread.
    Keywords: Aquatic habitat ; breeding systems ; evolution ; phylogeny ; radiation ; sterility ; survival
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 5
    Publication Date: 2024-01-12
    Description: The existence of multiple independently derived populations in landlocked marine lakes provides an opportunity for fundamental research into the role of isolation in population divergence and speciation in marine taxa. Marine lakes are landlocked water bodies that maintain a marine character through narrow submarine connections to the sea and could be regarded as the marine equivalents of terrestrial islands. The sponge Suberites diversicolor (Porifera: Demospongiae: Suberitidae) is typical of marine lake habitats in the Indo-Australian Archipelago. Four molecular markers (two mitochondrial and two nuclear) were employed to study genetic structure of populations within and between marine lakes in Indonesia and three coastal locations in Indonesia, Singapore and Australia. Within populations of S. diversicolor two strongly divergent lineages (A & B) (COI: p = 0.4% and ITS: p = 7.3%) were found, that may constitute cryptic species. Lineage A only occurred in Kakaban lake (East Kalimantan), while lineage B was present in all sampled populations. Within lineage B, we found low levels of genetic diversity in lakes, though there was spatial genetic population structuring. The Australian population is genetically differentiated from the Indonesian populations. Within Indonesia we did not record an East-West barrier, which has frequently been reported for other marine invertebrates. Kakaban lake is the largest and most isolated marine lake in Indonesia and contains the highest genetic diversity with genetic variants not observed elsewhere. Kakaban lake may be an area where multiple putative refugia populations have come into secondary contact, resulting in high levels of genetic diversity and a high number of endemic species.
    Keywords: Suberites diversicolor ; Indo-Australian Archipelago ; marine lakes ; evolution
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 6
    Publication Date: 2024-01-12
    Description: We provide results of a second survey of the hutan adat (forest traditionally exploited on a small scale by local people) situated in the Gunung Lumut Protection Forest, East Kalimantan, conducted in 2007 and closely following the first survey in 2005 (Wielstra & Pieterse 2009. Kukila 14: 1-15). An additional 29 species were observed, bringing the total number of species observed in GLPF to 217. These include two globally threatened (Vulnerable) species, 16 \xe2\x80\x9cSundaic Lowland Forest\xe2\x80\x9d biomerestricted species and one \xe2\x80\x9cSundaic montane forest\xe2\x80\x9d biome-restricted species. We confirmed the presence of over 1% of the biogeographic population of the congregatory waterbird Storm\xe2\x80\x99s Stork Ciconia stormi. The findings provide further support for our previous suggestion to recognize Gunung Lumut Protection Forest as an Important Bird Area. We also provide some remarks on the potential conservation value of hutanadat and raise issues to be addressed in further studies.
    Keywords: avifauna ; Gunung Lumut Protection Forest ; Kalimantan ; conservation value ; hutan adat ; Important Bird Area
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 7
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    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 25 no. 1, pp. 72-93
    Publication Date: 2024-01-12
    Description: The timber and pulp industries of Finland rely heavily on importations from Russia as source of raw timber. These imports raise the risk of accidentally importing forest pests and pathogens, especially bark beetles and their associated fungi, into Finland. Although ophiostomatoid fungi have previously been reported from Finland and Russia, the risks of accidentally moving these fungi has prompted a first survey to compare the diversity of conifer-infesting bark beetles and associated fungi from boreal forests on both sides of the Finnish-Russian border.\nThe aim of the present study was to identify and characterise Ophiostoma species isolated in association with 11 bark beetle species infesting Pinus sylvestris and Picea abies during this survey in the eastern parts of Finland and neighbouring Russia. Fungal isolates were grouped based on morphology and representatives of each morphological group were subjected to DNA sequence comparisons of the internal transcribed spaced region (ITS1, 5.8S, ITS2) and \xce\xb2-tubulin gene region. A total of 15 species of Ophiostoma were identified, including seven known species, five new species, and three species for which the identity remains uncertain. In the O. piceae-complex we identified O. canum, O. floccosum, O. karelicum and O. rachisporum sp. nov., and related to these, some isolates belonging to the European clade of O. minus in the O. minus-complex. Ophiostoma bicolor and O. fuscum sp. nov. were identified in the O. ips-complex, while O. ainoae, O. brunneo-ciliatum, O. tapionis sp. nov. and O. pallidulum sp. nov. were shown to group close to, but not in a strict monophyletic lineage with species of the O. ips-complex.\nTogether with a single O. abietinum-like isolate, the only species that grouped close to the Sporothrix schenckiiO. stenoceras complex, was O. saponiodorum sp. nov.
    Keywords: Bark beetle ; insect-fungus relationship ; Ophiostoma ; Ophiostomatales ; symbiosis
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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