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Figures S1–S12
Data type: .pdf
Explanation note: Figure S1. Relative synonymous codon usage (RSCU) of the protein-coding genes in two newly sequenced mitochondrial genomes of Elephantomyiini. Leu1 = Leu (CUN); Leu2 = Leu (UUR); Ser1 = Ser (AGN); Ser2 = Ser (UCN). — Figure S2. The ratio of Ka/Ks of 13 PCGs in two newly sequenced mitochondrial genomes of Elephantomyiini. — Figure S3. Secondary structures of tRNAs of two Elephantomyiini species. All tRNAs are labeled with the abbreviations of their corresponding amino acids. Dashes indicate Watson-Crick base pairing and dots indicate G-U base pairing. — Figure S4. AliGROOVE analysis for four datasets. The mean similarity score between sequences is represented by a colored square, based on AliGROOVE scores ranging from minus one, indicating a large difference in sequence composition from the remainder of the dataset (red coloration), to plus one, indicating similarity to all other comparisons (blue coloration). — Figure S5. Phylogenetic tree of Tipuloidea inferred from the dataset PCG12RNA under ML method. Numbers at the nodes are bootstrap values. The family Trichoceridae was set as the outgroup. — Figure S6. Phylogenetic tree of Tipuloidea inferred from the dataset PCG under ML method. Numbers at the nodes are bootstrap values. The family Trichoceridae was set as the outgroup. — Figure S7. Phylogenetic tree of Tipuloidea inferred from the dataset PCG12 under BI method. Numbers at the nodes are posterior probabilities. The family Trichoceridae was set as the outgroup. — Figure S8. Phylogenetic tree of Tipuloidea inferred from the dataset PCG12 under ML method. Numbers at the nodes are bootstrap values. The family Trichoceridae was set as the outgroup. — Figure S9. Phylogenetic tree of Tipuloidea inferred from the dataset PCGRNA under BI method. Numbers at the nodes are posterior probabilities. The family Trichoceridae was set as the outgroup. — Figure S10. Phylogenetic tree of Tipuloidea inferred from the dataset PCGRNA under ML method. Numbers at the nodes are bootstrap values. The family Trichoceridae was set as the outgroup. — Figure S11. Results of four-cluster likelihood mapping of the first question as 2D simplex graphs based on four datasets. — Figure S12. Results of four-cluster likelihood mapping of the second question as 2D simplex graphs based on four datasets.