Ruff, S Emil; Humez, Pauline; Hrabe de Angelis, Isabella; Diao, Muhe; Nightingale, Michael; Cho, Sara; Connors, Liam; Kuloyo, Olukayode O; Seltzer, Alan; Bowman, Samuel; Wankel, Scott D; McClain, Cynthia N; Mayer, Bernhard; Strous, Marc (2022): Relative abundances of bacterial amplicon sequence variants (ASV) from Canadian Pairie groundwater ecosystems [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.952419, In: Ruff, SE et al. (2022): Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.952473
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Abstract:
Groundwater ecosystems are globally widespread yet still poorly understood. We investigated the microbiology of >100 groundwater samples from 90 monitoring wells (<250m depth) located in 14 aquifers in the Canadian Prairie. This dataset contains relative abundances of bacterial lineages based on 16S rRNA gene amplicons retrieved from 119 groundwater samples of aquifers in the Canadian Prairie, collected between 2015 and 2020. The study area comprised 14 major aquifers and a geographic area of ~210.000 km2. The goal of the study was to understand the links between the biogeochemistry and microbial ecology of groundwater ecosystems in diverse geological settings on a broad spatial scale. Details concerning DNA extraction, sequencing and sequence analyses can be found in the associated publication by Ruff et al. 2023.
Coverage:
Median Latitude: 52.237756 * Median Longitude: -113.212072 * South-bound Latitude: 49.027319 * West-bound Longitude: -119.397742 * North-bound Latitude: 58.995364 * East-bound Longitude: -110.006390
Date/Time Start: 2016-01-19T00:00:00 * Date/Time End: 2017-12-12T00:00:00
Event(s):
GOWN_Airdrie * Latitude: 51.234343 * Longitude: -114.000246 * Date/Time: 2017-06-06T00:00:00 * Location: Canadian Prairie * Method/Device: Field measurement
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Ruff, S Emil | |||
| 2 | DATE/TIME | Date/Time | Ruff, S Emil | Geocode | ||
| 3 | LATITUDE | Latitude | Ruff, S Emil | Geocode | ||
| 4 | LONGITUDE | Longitude | Ruff, S Emil | Geocode | ||
| 5 | Well | Well | Ruff, S Emil | Well name of Groundwater Observation Well Network (GOWN) | ||
| 6 | Well, identifier | Well ID | Ruff, S Emil | Well number of Groundwater Observation Well Network (GOWN) | ||
| 7 | Sample code/label | Sample label | Ruff, S Emil | of Groundwater Observation Well Network (GOWN) | ||
| 8 | Sample code/label 2 | Sample label 2 | Ruff, S Emil | NCBI BioSample name | ||
| 9 | Kingdom | Kingdom | Ruff, S Emil | |||
| 10 | Phylum | Phylum | Ruff, S Emil | |||
| 11 | Class | Class | Ruff, S Emil | |||
| 12 | Order | Order | Ruff, S Emil | |||
| 13 | Family | Family | Ruff, S Emil | |||
| 14 | Genus | Genus | Ruff, S Emil | |||
| 15 | Species | Species | Ruff, S Emil | |||
| 16 | Amplicon sequence variant | ASV | Ruff, S Emil | |||
| 17 | Sequence identifier | SeqID | Ruff, S Emil | |||
| 18 | Accession number, genetics | Access no gen | Ruff, S Emil | NCBI BioProject accession number | ||
| 19 | Accession number, genetics | Access no gen | Ruff, S Emil | NCBI BioSample accession number | ||
| 20 | Sequence abundance | sequence abund | # | Ruff, S Emil |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
24831730 data points
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