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Weber, Judith Sophie; Shaida, Stephen Saikiu; Ngomtcho, Sen Claudine Henriette; Musa, Usman Baba; Adamu, Ahmadu; Gbem, Thaddeus Terlumun; Berger, Petra; Mamman, Mohammed; Nok, Jonathan Andrew; Kelm, Sørge (2020): Tryapanosoma prevalence in tsetse proboscis (Glossina sp.) collected in protected and tsetse invested areas in Nigeria [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.913422, In: Weber, JS et al. (2020): Molecular and morphological characterization of Glossina sp. and identification of associated Trypanosoma sp. in Nigeria including analysis for sialidase activity [dataset publication series]. PANGAEA, https://doi.org/10.1594/PANGAEA.915145

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Abstract:
This data set includes the results of nested PCR-analysis of tsetse (Glossina sp.) proboscis samples with primers described by Adams et.al. (2006) and Hamilton et al (2004) from a tsetse (Glossina sp.) collection carried out in Nigeria between 2014 and 2016. Traps were employed for one to three days in four different National Parks, one Game Reserve and two tsetse invested areas. Each tsetse was identified morphologically and dissected in the field. DNA was crudely extracted from the proboscis by Proteinase K digest. Presence of trypanosomes was investigated by amplification of Internal Transcribed Spacer-1 (ITS1). Identification of the respective trypanosome species was done based on lengths polymorphism of the ITS1 region by estimating the approximate size of the DNA amplicon based on electrophoretic separation in agarose gels, as well as sequencing of selected ITS1 amplicons and additional glycosomal Glyceraldehyde-3-phosohate dehydrogenase.
Related to:
Shaida, Stephen Saikiu; Weber, Judith Sophie; Gbem, Thaddeus Terlumun; Ngomtcho, Sen Claudine Henriette; Musa, Usman Baba; Achukwi, Mbunkah Daniel; Mamman, Mohammed; Ndams, Iliya Shehu; Nok, Jonathan Andrew; Kelm, Sørge (2018): Diversity and phylogenetic relationships of Glossina populations in Nigeria and the Cameroonian border region. BMC Microbiology, 18(S1), https://doi.org/10.1186/s12866-018-1293-6
Weber, Judith Sophie; Ngomtcho, Sen Claudine Henriette; Shaida, Stephen Saikiu; Chechet, Gloria Dada; Gbem, Thaddeus Terlumun; Nok, Jonathan Andrew; Mamman, Mohammed; Achukwi, Mbunkah Daniel; Kelm, Sørge (2019): Genetic diversity of trypanosome species in tsetse flies (Glossina spp.) in Nigeria. Parasites & Vectors, 12(1), https://doi.org/10.1186/s13071-019-3718-y
Further details:
Adams, Emily R; Malele, Imna I; Msangi, Atway R; Gibson, Wendy C (2006): Trypanosome identification in wild tsetse populations in Tanzania using generic primers to amplify the ribosomal RNA ITS-1 region. Acta Tropica, 100(1-2), 103-109, https://doi.org/10.1016/j.actatropica.2006.10.002
Hamilton, Patrick B; Stevens, Jamie R; Gaunt, Michael W; Gidley, Jennifer; Gibson, Wendy C (2004): Trypanosomes are monophyletic: evidence from genes for glyceraldehyde phosphate dehydrogenase and small subunit ribosomal RNA. International Journal for Parasitology, 34(12), 1393-1404, https://doi.org/10.1016/j.ijpara.2004.08.011
Ngomtcho, Sen Claudine Henriette; Weber, Judith Sophie; Ngo Bum, Elisabeth; Gbem, Thaddeus Terlumun; Kelm, Sørge; Achukwi, Mbunkah Daniel (2017): Molecular screening of tsetse flies and cattle reveal different Trypanosoma species including T. grayi and T. theileri in northern Cameroon. Parasites & Vectors, 10(1), https://doi.org/10.1186/s13071-017-2540-7
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