The Genomes of Oryza sativa: A History of Duplications
Figure 3
Overlapping FGENESH Predictions in All Three Rice Assemblies
Two predictions are shared when 50% of their coding regions can be aligned. Because of imprecision in the predictions and overlap criteria, we get slightly different numbers for each assembly, and these are encoded through multiple color-coded numbers in the Venn diagram. EST confirmation requires 100 bp of exact match. Unlike the genes, we do not bother to show a different number for each assembly, because they are very similar.