Estimating effective population size changes from preferentially sampled genetic sequences
Fig 3
Effective population size reconstruction for BNPR, BNPR-PS, and BNPR-PS with simple covariates.
The dotted black line represents the true effective population trajectory. The solid colored line represents the marginal posterior median effective population trajectory inferred by BNPR (yellow), BNPR-PS (blue), and BNPR-PS with simple covariates (purple), and the gray region represents the corresponding pointwise 95% credible intervals for the effective population trajectory. The log sampling intensity was 1.557 + γ(t) − 0.025t.