Abstract
In addition to tetrahydrobiopterin deficiencies and phenylalanine hydroxylase deficiency (phenylketonuria) due to PAH variants, the deficiency of the co-chaperone protein DNAJC12 was identified in 2017 as a novel cause of inherited hyperphenylalaninemia, revealing the genetic etiology in previously unresolved cases. In this study, we aimed to investigate DNAJC12 deficiency in non-tetrahydrobiopterin-deficient persistent hyperphenylalaninemia cases without biallelic PAH variants in a single pediatric metabolic center. It was determined retrospectively that 471 patients with non-tetrahydrobiopterin deficiency-hyperphenylalaninemia had undergone PAH gene sequencing and 451 patients had biallelic variants in PAH. DNAJC12 sequencing was performed in the remaining 20 patients, identifying a previously reported homozygous splice-site variant (c.158-2A > T) in one patient with axial hypotonia and developmental delay, and a novel, homozygous c.404del (p.Arg135Lysfs*21) frameshift variant in an asymptomatic patient. In segregation analysis, the asymptomatic patient’s both parents were also found to be homozygous for this variant and hyperphenylalaninemic. The parents may have had academic difficulties but intellectual disability could not be confirmed due to lack of cooperation. The symptomatic patient significantly benefited from treatment with sapropterin dihydrochloride and neurotransmitter precursors. DNAJC12 deficiency might be responsible for approximately 10% or more of cases with unexplained hyperphenylalaninemia. The phenotypic spectrum is broad, ranging from early infantile hypotonia to incidental diagnosis in adulthood. Similar to tetrahydrobiopterin deficiencies, early diagnosis and treatment with sapropterin dihydrochloride and neurotransmitter precursors can be beneficial, supporting the analysis of DNACJ12 gene in patients with unexplained hyperphenylalaninemia.
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Data availability
Study data are available from the corresponding author upon reasonable request.
Change history
09 June 2021
A Correction to this paper has been published: https://doi.org/10.1007/s11011-021-00759-8
References
Anikster Y, Haack TB, Vilboux T, Pode-Shakked B, Thöny B, Shen N, Guarani V, Meissner T, Mayatepek E, Trefz FK, Marek-Yagel D, Martinez A, Huttlin EL, Paulo JA, Berutti R, Benoist JF, Imbard A, Dorboz I, Heimer G, Landau Y, Ziv-Strasser L, Malicdan MCV, Gemperle-Britschgi C, Cremer K, Engels H, Meili D, Keller I, Bruggmann R, Strom TM, Meitinger T, Mullikin JC, Schwartz G, Ben-Zeev B, Gahl WA, Harper JW, Blau N, Hoffmann GF, Prokisch H, Opladen T, Schiff M (2017) Biallelic Variants in DNAJC12 Cause Hyperphenylalaninemia, Dystonia, and Intellectual Disability. Am J Hum Genet 100(2):257–266. https://doi.org/10.1016/j.ajhg.2017.01.002
Birk Møller L, Nygren AO, Scott P, Hougaard P, Bieber Nielsen J, Hartmann C, Güttler F, Tyfield L, Zschocke J (2007) Low proportion of whole exon deletions causing phenylketonuria in Denmark and Germany. Hum Mutat 28(2):207. https://doi.org/10.1002/humu.9481
Blau N, Hennermann JB, Langenbeck U, Lichter-Konecki U (2011) Diagnosis, classification, and genetics of phenylketonuria and tetrahydrobiopterin (BH4) deficiencies. Mol Genet Metab 104:2–9. https://doi.org/10.5167/uzh-56963
Blau N, Martinez A, Hoffmann GF, Thony B (2018) DNAJC12 deficiency: A new strategy in the diagnosis of hyperphenylalaninemias. Mol Genet Metab 123(1):1–5. https://doi.org/10.1016/j.ymgme.2017.11.005
Blau N, Yue W, Perez B (2021) International Database of Variations in Phenylalanine Hydroxylase Gene. http://www.biopku.org/pah/home.asp. Accessed 08 April 2021
Bouchereau J, Huttlin EL, Guarani V, Pichard S, Anikster Y, Schiff M (2018) DNAJC12: A molecular chaperone involved in proteostasis, PKU, biogenic amines metabolism and beyond? Mol Genet Metab 123(3):285–286. https://doi.org/10.1016/j.ymgme.2018.01.006
de Sain-van der Velden MGM, Kuper WFE, Kuijper MA, van Kats LAT, Prinsen HCMT, Balemans ACJ, Visser G, van Gassen KLI, van Hasselt PM, (2018) Beneficial Effect of BH4 Treatment in a 15-Year-Old Boy with Biallelic Variants in DNAJC12. JIMD Rep 42:99–103. https://doi.org/10.1007/8904_2017_86
Feng Y, Liu S, Tang C, Jiang X, Tang F, Li B, Jia X, Chen Q, Liu J, Huang Y (2019) Identification of an inherited pathogenic DNAJC12 variant in a patient with hyperphenylalaninemia. Clin Chim Acta 490:172–175. https://doi.org/10.1016/j.cca.2018.09.002
Gallego D, Leal F, Gámez A, Castro M, Navarrete R, Sanchez-Lijarcio O, Vitoria I, Bueno-Delgado M, Belanger-Quintana A, Morais A, Pedrón-Giner C, García I, Campistol J, Artuch R, Alcaide C, Cornejo V, Gil D, Yahyaoui R, Desviat LR, Ugarte M, Martínez A, Pérez B (2020) Pathogenic variants of DNAJC12 and evaluation of the encoded cochaperone as a genetic modifier of hyperphenylalaninemia. Hum Mutat 41(7):1329–1338. https://doi.org/10.1002/humu.24026
Hillert A, Anikster Y, Belanger-Quintana A, Burlina A, Burton BK, Carducci C, Chiesa AE, Christodoulou J, Đorđević M, Desviat LR, Eliyahu A, Evers RAF, Fajkusova L, Feillet F, Bonfim-Freitas PE, Giżewska M, Gundorova P, Karall D, Kneller K, Kutsev SI, Leuzzi V, Levy HL, Lichter-Konecki U, Muntau AC, Namour F, Oltarzewski M, Paras A, Perez B, Polak E, Polyakov AV, Porta F, Rohrbach M, Scholl-Bürgi S, Spécola N, Stojiljković M, Shen N, Santana-da Silva LC, Skouma A, van Spronsen F, Stoppioni V, Thöny B, Trefz FK, Vockley J, Yu Y, Zschocke J, Hoffmann GF, Garbade SF, Blau N (2020) The Genetic Landscape and Epidemiology of Phenylketonuria. Am J Hum Genet 107(2):234–250. https://doi.org/10.1016/j.ajhg.2020.06.006
Jung-Kc K, Himmelreich N, Prestegård KS, Shi TS, Scherer T, Ying M, Jorge-Finnigan A, Thöny B, Blau N, Martinez A (2019) Phenylalanine hydroxylase variants interact with the co-chaperone DNAJC12. Hum Mutat 40(4):483–494. https://doi.org/10.1002/humu.23712
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna A, Birnbaum DP, Gauthier LD, Brand H, Solomonson M, Watts NA, Rhodes D, Singer-Berk M, England EM, Seaby EG, Kosmicki JA, Walters RK, Tashman K, Farjoun Y, Banks E, Poterba T, Wang A, Seed C, Whiffin N, Chong JX, Samocha KE, Pierce-Hoffman E, Zappala Z, O’Donnell-Luria AH, Minikel EV, Weisburd B, Lek M, Ware JS, Vittal C, Armean IM, Bergelson L, Cibulskis K, Connolly KM, Covarrubias M, Donnelly S, Ferriera S, Gabriel S, Gentry J, Gupta N, Jeandet T, Kaplan D, Llanwarne C, Munshi R, Novod S, Petrillo N, Roazen D, Ruano-Rubio V, Saltzman A, Schleicher M, Soto J, Tibbetts K, Tolonen C, Wade G, Talkowski ME; Genome Aggregation Database Consortium, Neale BM, Daly MJ, MacArthur DG (2020) The Variantal constraint spectrum quantified from variation in 141,456 humans. Nature 581(7809):434–443. https://doi.org/10.1038/s41586-020-2308-7
Landrum MJ, Lee JM, Benson M, Brown GR, Chao C, Chitipiralla S, Gu B, Hart J, Hoffman D, Jang W, Karapetyan K, Katz K, Liu C, Maddipatla Z, Malheiro A, McDaniel K, Ovetsky M, Riley G, Zhou G, Holmes JB, Kattman BL, Maglott DR (2018) ClinVar: improving access to variant interpretations and supporting evidence. Nucleic Acid Res 46(D1):D1062–D1067. https://doi.org/10.1093/nar/gkx1153
Li M, Yang Q, Yi S, Qin Z, Luo J, Fan X (2020) Two novel Variants in DNAJC12 identified by whole-exome sequencing in a patient with mild hyperphenylalaninemia. Mol Genet Genomic Med 8(8):e1303. https://doi.org/10.1002/mgg3.1303
Razipour M, Alavinejad E, Sajedi SZ, Talebi S, Entezam M, Mohajer N, Kazemi-Sefat GE, Gharesouran J, Setoodeh A, Mohaddes Ardebili SM, Keramatipour M (2017) Genetic study of the PAH locus in the Iranian population: familial gene Variants and minihaplotypes. Metab Brain Dis 32(5):1685–1691. https://doi.org/10.1007/s11011-017-0048-7
Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL, Laboratory Quality Assurance Committee ACMG (2015) Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med 17(5):405–424. https://doi.org/10.1038/gim.2015.30
Stenson PD, Ball EV, Mort M, Phillips AD, Shiel JA, Thomas NS, Abeysinghe S, Krawczak M, Cooper DN (2003) Human Gene Variant Database (HGMD): 2003 update. Hum Mutat 21(6):577–581. https://doi.org/10.1002/humu.10212
Straniero L, Guella I, Cilia R, Parkkinen L, Rimoldi V, Young A, Asselta R, Soldà G, Sossi V, Stoessl AJ, Priori A, Nishioka K, Hattori N, Follett J, Rajput A, Blau N, Pezzoli G, Farrer MJ, Goldwurm S, Rajput AH, Duga S (2017) DNAJC12 and dopa-responsive nonprogressive parkinsonism. Ann Neurol 82(4):640–646. https://doi.org/10.1002/ana.25048
van Spronsen FJ, Himmelreich N, Rüfenacht V, Shen N, Vliet DV, Al-Owain M, Ramzan K, Alkhalifi SM, Lunsing RJ, Heiner-Fokkema RM, Rassi A, Gemperle-Britschgi C, Hoffmann GF, Blau N, Thöny B (2017) Heterogeneous clinical spectrum of DNAJC12-deficient hyperphenylalaninemia: from attention deficit to severe dystonia and intellectual disability. J Med Genet. https://doi.org/10.1136/jmedgenet-2017-104875
Veenma D, Cordeiro D, Sondheimer N, Mercimek-Andrews S (2018) DNAJC12-associated developmental delay, movement disorder, and mild hyperphenylalaninemia identified by whole-exome sequencing re-analysis. Eur J Hum Genet 26(12):1867–1870. https://doi.org/10.1038/s41431-018-0237-9
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Kısmet Çıkı: Conceptualization, methodology, investigation, writing–original draft; Yılmaz Yıldız: Conceptualization, methodology, investigation, writing, review and editing; Didem Yücel Yılmaz: Genetic analysis, writing, editing; Emine Pektaş: Investigation, review; Ayşegül Tokatlı: Methodology, review and editing, supervision; R. Köksal Özgül: Genetic analysis, editing; H. Serap Sivri: Methodology, review and editing, supervision; Ali Dursun: Methodology, review and editing, supervision. All authors approved the final manuscript as submitted.
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Approval was obtained from the ethics committee of Hacettepe University (Date: August 25, 2020; Approval no: 2020/16–21). The procedures used in this study adhere to the tenets of the Declaration of Helsinki.
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Çıkı, K., Yıldız, Y., Yücel Yılmaz, D. et al. DNACJ12 deficiency in patients with unexplained hyperphenylalaninemia: two new patients and a novel variant. Metab Brain Dis 36, 1405–1410 (2021). https://doi.org/10.1007/s11011-021-00753-0
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DOI: https://doi.org/10.1007/s11011-021-00753-0