Description: A late Pleistocene to Holocene submerged and encrusted speleothem exhibits a complex history including a meteoric phase and two marine phases. A combined study using petrography, mineralogy, and inorganic and organic geochemistry, as well as geochronology has shown that phototrophic and heterotrophic biological activity impacted carbonate precipitation during all phases of carbonate accretion. The stalactite formed ca. 30 m below modern sea level at a marginal overhang in the Blue Hole of Lighthouse Reef Atoll. Unlike purely meteoric speleothems, the Belize example consists of a meteoric core, a marine aragonite crust, and a serpulid-micrite-rich outer crust as a result of postglacial flooding of the karst cave. The core of the stalactite has a tufaceous texture, containing algal or microbial remains, and consists entirely of low-magnesium calcite, formed 19.55-10.68 kyr BP. The texture suggests that the stalactite formed at the cave entrance, and, hence, the former cave ceiling had apparently collapsed earlier during the Pleistocene. Oxygen (δ18O) and carbon (δ13C) isotopes across the core suggest a trend towards drier conditions and reduced soil and plant cover after the last glacial maximum. The marine aragonite crust consists of stacked botryoids in which individual crystals up to 700 lm have dark terminations enriched in high-magnesium calcite. This crust accreted from 10.82 to 9.95 kyr BP in warm shallow water during the early Holocene thermal optimum. Carbonate accretion rates were considerable and averaged 125 μm/yr. The crust has a dense, laminated texture on one side and a porous, shrubby texture on the other. The presence of n-C16:1ω5, n-C17:1ω6, and 10Me-C16 fatty acids in the laminated crust suggests that sulfate-reducing bacteria contributed to aragonite formation in an environment that was less open than the formation environment of the porous crust, where these biomarkers are lacking (n-C16:1ω5,n-C17:1ω6) or are less abundant (10Me-C16). Enrichment of 34S and 18O in carbonate-associated sulfate (CAS) relative to seawater sulfate also suggests sulfate reduction during carbonate formation. The greater contribution of heterotrophic processes to aragonite precipitation in the laminated crust is also reflected in δ13C values as low as -1.3%, whereas no such depletion is observed in the aragonite of the porous crust (δ13C values as low as 0.0%). A pronounced isotopic variability and excursions to positive δ13C values as high as +3.5%0 in the inner half of the laminated crust indicate an episodic, local impact of photosynthesis on aragonite precipitation, whereas the lack of such excursions in the porous crust (δ13C values as high as +1.5%0) is again best explained by a more open environment of formation. After a ca. 5 kyr hiatus, from 4.39 kyr BP, a biogenic crust of abundant serpulids and finely crystalline, microbial and detrital carbonate, consisting of high-magnesium calcite and aragonite, accreted on the outer surface of the stalactite. Outermost crust accretion was probably influenced by the inundation of the Lighthouse Reef lagoon that started to shed abundant fine-grained carbonate sediment into the Blue Hole. The stalactite broke off the cave ceiling either before or after the formation of the outermost crust, likely due to seismic movements along the nearby plate boundary. The study demonstrates that like speleothems from the terrestrial realm, submerged stalactites may have had complex histories with great potential as paleoenvironmental archives.

Description: Sediments of upwelling regions off Namibia, Peru, and Chile contain dense populations of large nitrate-storing sulfide-oxidizing bacteria, Thiomargarita, Beggiatoa, and Thioploca. Increased contents of monounsaturated C16 and C18 fatty acids have been found at all stations studied, especially when a high density of sulfide oxidizers in the sediments was observed. The distribution of lipid biomarkers attributed to sulfate reducers (10MeC16:0 fatty acid, ai-C15:0 fatty acid, and mono-O-alkyl glycerol ethers) compared to the distribution of sulfide oxidizers indicate a close association between these bacteria. As a consequence, the distributions of sulfate reducers in sediments of Namibia, Peru, and Chile are closely related to differences in the motility of the various sulfide oxidizers at the three study sites. Depth profiles of mono-O-alkyl glycerol ethers have been found to correlate best with the occurrence of large sulfide-oxidizing bacteria. This suggests a particularly close link between mono-O-alkyl glycerol ether-synthesizing sulfate reducers and sulfide oxidizers. The interaction between sulfide-oxidizing bacteria and sulfate-reducing bacteria reveals intense sulfur cycling and degradation of organic matter in different sediment depths.

Description: Sponges host a remarkable diversity of microbial symbionts, however, the benefit their microbes provide is rarely understood. Here, we describe two new sponge species from deep-sea asphalt seeps and show that they live in a nutritional symbiosis with methane-oxidizing (MOX) bacteria. Metagenomics and imaging analyses revealed unusually high amounts of MOX symbionts in hosts from a group previously assumed to have low microbial abundances. These symbionts belonged to the Marine Methylotrophic Group 2 clade. They are host-specific and likely vertically transmitted, based on their presence in sponge embryos and streamlined genomes, which lacked genes typical of related free-living MOX. Moreover, genes known to play a role in host–symbiont interactions, such as those that encode eukaryote-like proteins, were abundant and expressed. Methane assimilation by the symbionts was one of the most highly expressed metabolic pathways in the sponges. Molecular and stable carbon isotope patterns of lipids confirmed that methane-derived carbon was incorporated into the hosts. Our results revealed that two species of sponges, although distantly related, independently established highly specific, nutritional symbioses with two closely related methanotrophs. This convergence in symbiont acquisition underscores the strong selective advantage for these sponges in harboring MOX bacteria in the food-limited deep sea.

Description: Microbial carbonates are common components of Quaternary tropical coral reefs. Previous studies revealed that sulfate-reducing bacteria trigger microbial carbonate precipitation in supposedly cryptic reef environments. Here, using petrography, lipid biomarker analysis, and stable isotope data, we aim to understand the formation mechanism of microbial carbonate enclosed in deep fore reef limestones from Mayotte and Mohéli, Comoro Islands, which differ from other reefal microbial carbonates in that they contain less microbial carbonate and are dominated by numerous sponges. To discern sponge-derived lipids from lipids enclosed in microbial carbonate, lipid biomarker inventories of diverse sponges from the Mayotte and Mohéli reef systems were examined. Abundant peloidal, laminated, and clotted textures point to a microbial origin of the authigenic carbonates, which is supported by ample amounts of mono- O -alkyl glycerol monoethers (MAGEs) and terminally branched fatty acids; both groups of compounds are attributed to sulfate-reducing bacteria. Sponges revealed a greater variety of alkyl chains in MAGEs, including new, previously unknown, mid-chain monomethyl- and dimethyl-branched MAGEs, suggesting a diverse community of sulfate reducers different from the sulfate-reducers favoring microbialite formation. Aside from biomarkers specific for sulfate-reducing bacteria, lipids attributed to demosponges (i.e., demospongic acids) are also present in some of the sponges and the reefal carbonates. Fatty acids attributed to demosponges show a higher diversity and a higher proportion in microbial carbonate compared to sponge tissue. Such pattern reflects significant taphonomic bias associated with the preservation of demospongic acids, with preservation apparently favored by carbonate authigenesis.