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  • PANGAEA  (12)
  • Society for Applied Microbiology  (1)
Publikationsart
Schlagwörter
Erscheinungszeitraum
  • 1
    Publikationsdatum: 2024-02-07
    Beschreibung: Carbon cycling by Antarctic microbial plankton is poorly understood but it plays a major role in CO2 sequestration in the Southern Ocean. We investigated the summer bacterioplankton community in the largely understudied Weddell Sea, applying Illumina amplicon sequencing, measurements of bacterial production and chemical analyses of organic matter. The results revealed that the patchy distribution of productive coastal polynyas and less productive, mostly ice-covered sites was the major driver of the spatial changes in the taxonomic composition and activity of bacterioplankton. Gradients in organic matter availability induced by phytoplankton blooms were reflected in the concentrations and composition of dissolved carbohydrates and proteins. Bacterial production at bloom stations was, on average, 2.7 times higher than at less productive sites. Abundant bloom-responsive lineages were predominately affiliated with ubiquitous marine taxa, including Polaribacter, Yoonia-Loktanella, Sulfitobacter, the SAR92 clade, and Ulvibacter, suggesting a widespread genetic potential for adaptation to sub-zero seawater temperatures. A co-occurrence network analysis showed that dominant taxa at stations with low phytoplankton productivity were highly connected, indicating beneficial interactions. Overall, our study demonstrates that heterotrophic bacterial communities along Weddell Sea ice shelves were primarily constrained by the availability of labile organic matter rather than low seawater temperature.
    Materialart: Article , PeerReviewed
    Format: text
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 2
    facet.materialart.
    Unbekannt
    PANGAEA
    In:  Supplement to: Mammitzsch, Kerstin; Jost, Günter; Jürgens, Klaus (2014): Impact of dissolved inorganic carbon concentrations and pH on growth of the chemolithoautotrophic epsilonproteobacterium Sulfurimonas gotlandica GD1 _T. Microbiology Open, 3(1), 80-88, https://doi.org/10.1002/mbo3.153
    Publikationsdatum: 2023-02-24
    Beschreibung: Epsilonproteobacteria have been found globally distributed in marine anoxic/sulfidic areas mediating relevant transformations within the sulfur and nitrogen cycles. In the Baltic Sea redox zones, chemoautotrophic epsilonproteobacteria mainly belong to the Sulfurimonas gotlandica GD17 cluster for which recently a representative strain, S. gotlandica GD1T, could be established as a model organism. In this study, the potential effects of changes in dissolved inorganic carbon (DIC) and pH on S. gotlandica GD1T were examined. Bacterial cell abundance within a broad range of DIC concentrations and pH values were monitored and substrate utilization was determined. The results showed that the DIC saturation concentration for achieving maximal cell numbers was already reached at 800 µmol/l, which is well below in situ DIC levels. The pH optimum was between 6.6 and 8.0. Within a pH range of 6.6-7.1 there was no significant difference in substrate utilization; however, at lower pH values maximum cell abundance decreased sharply and cell-specific substrate consumption increased.
    Schlagwort(e): BIOACID; Biological Impacts of Ocean Acidification
    Materialart: Dataset
    Format: application/zip, 3 datasets
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 3
    Publikationsdatum: 2023-11-15
    Beschreibung: Global warming poses new threats to marine ecosystems since rising seawater temperature potentially induces cascading effects in biogeochemical cycles and food webs. Heterotrophic bacteria are the main producers of CO2 in the ocean, thereby counteracting the biological drawdown of CO2 by primary production. In Antarctic marine systems, low seawater temperature, and the low availability of labile organic matter are major environmental constraints on bacterial growth and degradation activity. However, temperature and the availability of resources for heterotrophic bacteria undergo considerable change induced by climate warming combined with subsequent ice melt and changes in primary productivity. This project aims to test single and combined effects of temperature and organic matter availability on Antarctic marine bacterioplankton. This data set includes biological and biogeochemical parameters measured alongside the CTD casts during the Polarstern cruise PS111 to the Weddell Sea. Samples were collected in the upper 100 m of the water column at the Eastern Weddell Sea Shelf and at the Filchner-Ronne ice shelf. Concentrations of different components of dissolved organic matter and inorganic nutrients as well as chlorophyll a concentrations and bacterial cell numbers are reported.
    Schlagwort(e): Alanine; Amino acids, dissolved; Amino acids, dissolved, Carbon; ANT-XXXIII/2; Arabinose; Arginine; Aspartic acid; Auto-analyzer (QuAAtro, Seal analytical); Grasshoff et al., 1983; Bacteria; Bottle number; Carbohydrates, dissolved combined; Carbohydrates, dissolved combined, Carbon; Carbon, organic, dissolved; Chlorophyll a; CombiBac; Cruise/expedition; CTD; CTD/Rosette; CTD-RO; DATE/TIME; Depth, bathymetric; DEPTH, water; Ecology & Environment; Event label; Flow cytometry system, Becton Dickinson, FACSCalibur; Fluorometer; Welschmeyer, 1994; Fucose; Galactosamine; Galactose; Galacturonic acid; gamma-Aminobutyric acid; Glucosamine; Glucose; Glucuronic acid; Glutamic acid; Glycine; High-performance anion-exchange chromatography coupled with pulsed amperometric detection (ICS 3000, Dionex); Engel and Händel (2011); High-temperature catalytic oxidation method (TOC-VCSH, Shimadzu) (Qian and Mopper, 1996); HPLC system (Agilent 1260); Lindroth and Mopper, 1979; Isoleucine; Kombinierte Effekte von Temperatur und Ressourcenverfügbarkeit auf den Abbau von organischem Material durch Antarktisches Bakterioplankton; LATITUDE; Lazarev Sea; Leucine; LONGITUDE; Mannose/Xylose; Microbiology; Nitrate; Nitrite; Phenylalanine; Phosphate; Polarstern; Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas; PS111; PS111_101-1; PS111_10-2; PS111_12-2; PS111_123-1; PS111_131-1; PS111_132-1; PS111_137-2; PS111_140-1; PS111_14-1; PS111_16-1; PS111_17-1; PS111_22-1; PS111_28-1; PS111_33-1; PS111_37-2; PS111_40-3; PS111_47-1; PS111_51-1; PS111_58-1; PS111_62-1; PS111_68-1; PS111_74-1; PS111_82-1; PS111_89-1; PS111_9-3; Rhamnose; Sample ID; Serine; Silicate, inorganic, dissolved; South Atlantic Ocean; SPP1158; Station label; Threonine; Tyrosine; Valine; Weddell Sea
    Materialart: Dataset
    Format: text/tab-separated-values, 5156 data points
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 4
    Publikationsdatum: 2023-10-28
    Beschreibung: Global warming poses new threats to marine ecosystems since rising seawater temperature potentially induces cascading effects in biogeochemical cycles and food webs. Heterotrophic bacteria are the main producers of CO2 in the ocean, thereby counteracting the biological drawdown of CO2 by primary production. In Antarctic marine systems, low seawater temperature, and the low availability of labile organic matter are major environmental constraints on bacterial growth and degradation activity. However, temperature and the availability of resources for heterotrophic bacteria undergo considerable change induced by climate warming combined with subsequent ice melt and changes in primary productivity. This project aims to test single and combined effects of temperature and organic matter availability on Antarctic marine bacterioplankton. This data set includes measurements on bacterial biomass production at 0°C and 3°C measured alongside the CTD casts during the Polarstern cruise PS111 to the Weddell Sea. Samples were collected in the upper 100 m of the water column at the Eastern Weddell Sea Shelf and at the Filchner-Ronne ice shelf.
    Schlagwort(e): ANT-XXXIII/2; Bacterial production; CombiBac; CTD/Rosette; CTD-RO; DEPTH, water; Ecology & Environment; Estimated; Event label; Incorporation of 14C-leucine (Simon and Azam, 1989, http://www.int-res.com/articles/meps/51/m051p201.pdf; Simon et al. 2004, doi:10.4319/lo.2004.49.4.1035); Incubation temperature; Kombinierte Effekte von Temperatur und Ressourcenverfügbarkeit auf den Abbau von organischem Material durch Antarktisches Bakterioplankton; Lazarev Sea; Microbiology; Polarstern; Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas; PS111; PS111_101-1; PS111_10-2; PS111_12-2; PS111_123-1; PS111_131-1; PS111_132-1; PS111_137-2; PS111_140-1; PS111_14-1; PS111_16-1; PS111_17-1; PS111_22-1; PS111_28-1; PS111_33-1; PS111_37-2; PS111_40-3; PS111_47-1; PS111_51-1; PS111_58-1; PS111_62-1; PS111_68-1; PS111_74-1; PS111_82-1; PS111_89-1; PS111_9-3; Sample ID; South Atlantic Ocean; SPP1158; Weddell Sea
    Materialart: Dataset
    Format: text/tab-separated-values, 2548 data points
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 5
    facet.materialart.
    Unbekannt
    PANGAEA
    In:  Leibniz Institute for Baltic Sea Research, Warnemünde | Supplement to: Orlikowska, Anna; Stolle, Christian; Pollehne, Falk; Jürgens, Klaus; Schulz-Bull, Detlef (2015): Dynamics of halocarbons in coastal surface waters during short term mesocosm experiments. Environmental Chemistry, 12(4), 515, https://doi.org/10.1071/EN14204
    Publikationsdatum: 2024-02-01
    Beschreibung: The aim of the present study was to evaluate the influence of different light quality, especially ultraviolet radiation (UVR), on the dynamics of volatile halogenated organic compounds (VHOCs) at the sea surface. Short term experiments were conducted with floating gas-tight mesocosms of different optical qualities. Six halocarbons (CH3I, CHCl3, CH2Br2, CH2ClI, CHBr3 and CH2I2), known to be produced by phytoplankton, together with a variety of biological and environmental variables were measured in the coastal southern Baltic Sea and in the Raunefjord (North Sea). These experiments showed that ambient levels of UVR have no significant influence on VHOC dynamics in the natural systems. We attribute it to the low radiation doses that phytoplankton cells receive in a normal turbulent surface mixed layer. The VHOC concentrations were influenced by their production and removal processes, but they were not correlated with biological or environmental parameters investigated. Diatoms were most likely the dominant biogenic source of VHOCs in the Baltic Sea experiment, whereas in the Raunefjord experiment macroalgae probably contributed strongly to the production of VHOCs. The variable stable carbon isotope signatures (d13C values) of bromoform (CHBr3) also indicate that different autotrophic organisms were responsible for CHBr3 production in the two coastal environments. In the Raunefjord, despite strong daily variations in CHBr3 concentration, the carbon isotopic ratio was fairly stable with a mean value of -26 per mil. During the declining spring phytoplankton bloom in the Baltic Sea, the d13C values of CHBr3 were enriched in 13C and showed noticeable diurnal changes (-12 per mil ± 4). These results show that isotope signature analysis is a useful tool to study both the origin and dynamics of VHOCs in natural systems.
    Schlagwort(e): SOPRAN; Surface Ocean Processes in the Anthropocene
    Materialart: Dataset
    Format: application/zip, 2 datasets
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 6
    Publikationsdatum: 2024-01-26
    Schlagwort(e): Biomass as carbon per individual; Clearance rate per individual; EXP; Experiment; Nanoflagellates_FEEDEXP; Taxon/taxa; Treatment: temperature; Uniform resource locator/link to reference
    Materialart: Dataset
    Format: text/tab-separated-values, 15 data points
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 7
    facet.materialart.
    Unbekannt
    PANGAEA
    In:  Leibniz Institute for Baltic Sea Research, Warnemünde
    Publikationsdatum: 2024-02-01
    Schlagwort(e): 1-Iodoethane; Algae abundance; Ammonia; Bacteria; Baltic Sea; Baltic-Sea-mesocosm-2011; Bromodichloromethane; Chloroiodomethane; Chlorophyll a; DATE/TIME; DEPTH, water, experiment; Dibromochloromethane; Dibromomethane; Diiodomethane; Eukaryotes; Experimental treatment; Identification; Iodomethane; MESO; Mesocosm experiment; Nanoeukaryotes; Nitrate; Nitrite; Phosphate; Picoeukaryotes; Radiation, photosynthetically active; Salinity; Silicate; SOPRAN; Surface Ocean Processes in the Anthropocene; Synechococcus; Temperature, air; Temperature, water; Thymidine incorporation rate; Tribromomethane; Tribromomethane, δ13C; Trichloromethane
    Materialart: Dataset
    Format: text/tab-separated-values, 1174 data points
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 8
    facet.materialart.
    Unbekannt
    PANGAEA
    In:  Leibniz Institute for Baltic Sea Research, Warnemünde
    Publikationsdatum: 2024-02-01
    Schlagwort(e): 1-Iodoethane; Algae abundance; Bacteria; Bromodichloromethane; Chloroiodomethane; Chlorophyll a; DATE/TIME; DEPTH, water, experiment; Dibromochloromethane; Dibromomethane; Diiodomethane; Eukaryotes; Experimental treatment; Identification; Iodomethane; MESO; Mesocosm experiment; Nanoeukaryotes; Picoeukaryotes; Radiation, photosynthetically active; Raunefjord-mesocosm-2011; SOPRAN; Surface Ocean Processes in the Anthropocene; Synechococcus; Temperature, air; Temperature, water; Thymidine incorporation rate; Tribromomethane; Tribromomethane, δ13C; Trichloromethane
    Materialart: Dataset
    Format: text/tab-separated-values, 1122 data points
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 9
    Publikationsdatum: 2024-03-22
    Beschreibung: Upwelling systems are significant sources of atmospheric nitrous oxide (N₂O). The Benguela Upwelling System is one of the most productive regions worldwide and a temporally variable source of N₂O. Strong O₂ depletions above the shelf are favoring periodically OMZ formations. We aimed to assess underlying N₂O production and consumption processes on different temporal and spatial scales during austral winter in the Benguela Upwelling System, when O₂⁻deficiency in the water column is relatively low. The fieldwork took place during the cruise M157 (August 4ᵗʰ – September 16ᵗʰ 2019) onboard the R/V METEOR. This expedition included four close-coastal regions around Walvis Bay at 23°S, which presented the lowest O₂ concentrations near the seafloor and thus may provide hotspots of N₂O production. Seawater was collected in 10 L free-flow bottles by using a rosette system equipped with conductivity-temperature-depth (CTD) sensors (SBE 911plus, Seabird-electronics, USA).Seawater samples were collected from 10 L free-flow bottles bubble-free, filled into 200 mL serum bottles and immediately fixed with saturated mercury chloride (HgCl₂). Concentrations of dissolved N₂O were measured by a purge and trap system using a dynamic headspace (Sabbaghzadeh et al., 2021). The N₂O gas saturation (N₂Oₛₐₜ in %) was calculated from the concentration ratio between the seawater sample and seawater equilibrated with the atmosphere. ∆N₂O (N₂O saturation disequilibrium in nmol L⁻¹) was calculated as the difference between the measured N₂O concentration and the atmospheric equilibrium N₂O concentration using Bunsen solubility coefficient (Weiss and Price, 1980). AOU (apparent oxygen utilization in µmol L⁻¹) expresses the O₂ consumption by microbial respiration and was calculated as the difference between the equilibrated O₂ and observed O₂ concentration with the same physico-chemical properties (Weiss and Price, 1980).
    Schlagwort(e): apparent oxygen utilization; Benguela Upwelling System; BUSUC 1; Calculated according to Weiss and Price (1980); CTD, Sea-Bird SBE 911plus; CTD/Rosette; CTD-RO; DATE/TIME; DEPTH, water; Event label; Field observation; Gas chromatography, Agilent 7820B, coupled with a flame ionization detector and an Electron Capture Detector; LATITUDE; LONGITUDE; M157; M157_14-2; M157_16-3; M157_17-2; M157_2-8; Measured according to Sabbaghzadeh et al. (2021); Meteor (1986); Namibia; nitrous oxide; Nitrous oxide, dissolved; Nitrous oxide, dissolved, disequilibrium; Nitrous oxide, dry air; Nitrous oxide saturation; Oxygen, apparent utilization; oxygen minimum zone; Partial pressure of nitrous oxide in wet air; Sample code/label; Station label
    Materialart: Dataset
    Format: text/tab-separated-values, 332 data points
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 10
    Publikationsdatum: 2024-03-22
    Beschreibung: Upwelling systems are significant sources of atmospheric nitrous oxide (N₂O). The Benguela Upwelling System is one of the most productive regions worldwide and a temporally variable source of N₂O. Strong O₂ depletions above the shelf are favoring periodically OMZ formations. We aimed to assess underlying N₂O production and consumption processes on different temporal and spatial scales during austral winter in the Benguela Upwelling System, when O₂-deficiency in the water column is relatively low. The fieldwork took place during the cruise M157 (August 4ᵗʰ – September 16ᵗʰ 2019) onboard the R/V METEOR. This expedition included four close-coastal regions around Walvis Bay at 23°S, which presented the lowest O₂ concentrations near the seafloor and thus may provide hotspots of N₂O production. Seawater was collected in 10 L free-flow bottles by using a rosette system equipped with conductivity-temperature-depth (CTD) sensors (SBE 911plus, Seabird-electronics, USA). Concentrations of inorganic nutrients (PO₄³⁻, NH₄⁺, NO₃⁻, NO₂⁻, and SiO₂) were measured colorimetrically according to Grasshoff et al. (1999) by means of a continuous segmented flow analyzer (SEAL Analytical, QuAAtro39). To determine the water mass fractions along the sampling transects, vertical profiles were collected using a free-falling microstructure profiler (MSS90L, Sea & Sun Technology). Temperature, dissolved oxygen, and salinity were measured with a CTD system consisting of a SeaBird 911+ probe, mounted on a sampling rosette.
    Schlagwort(e): Ammonium; Benguela Upwelling System; BUSUC 1; Continuous Segmented Flow Analyzer, SEAL Analytical, QuAAtro39; CTD, Sea-Bird SBE 911plus; CTD/Rosette; CTD-RO; DATE/TIME; DEPTH, water; Event label; Field observation; LATITUDE; LONGITUDE; M157; M157_10-7; M157_11-4; M157_12-2; M157_14-2; M157_16-25; M157_16-3; M157_16-6; M157_17-16; M157_17-2; M157_24-1; M157_25-1; M157_2-8; M157_28-1; M157_2-9; M157_36-2; M157_41-14; M157_42-2; M157_43-2; M157_43-6; M157_9-2; Meteor (1986); Microstructure profiler, Sea & Sun Technology, MSS90L; Namibia; Nitrate; Nitrite; nutrients; Oxygen; oxygen minimum zone; PCTD-RO; Phosphate; PumpCTD/Rosette; Salinity; Sample code/label; Silicate; Station label; Temperature, water; Water mass; water mass fraction
    Materialart: Dataset
    Format: text/tab-separated-values, 1660 data points
    Standort Signatur Einschränkungen Verfügbarkeit
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