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    Meteorological Society of Japan
    In:  EPIC3Journal of the Meteorological Society of Japan. Ser.II, Meteorological Society of Japan, 81(4), pp. 747-757, ISSN: 0026-1165
    Publication Date: 2019-07-17
    Description: We present a client/server database system with the potential to make all DNA sequences searchable. The database estimated to be approximately 200 Gbps, contains various types of sequences, including WGS and clone reads, draft assemblies, finished sequences, refSeq etc. The search engine will be SSAHA2, a package combined SSAHA (sequence search and alignment by hashing algorithm) with cross_match. Matching seeds of a few kmer words are detected by the SSAHA algorithm. Both query and subject sequences are cut off according to the locations of the matching seeds and then passed to cross_match for full alignment. We aim to develop a platform-independent client/server system which can provide a near real-time (under 10 seconds) search service for a clustered database.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
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    EGU
    In:  EPIC3European Geisciences Union General Assembly 2019, Vienna, Austria, 2019-04-07-2019-04-12Vienna, EGU
    Publication Date: 2019-06-11
    Description: Aerosol strongly affect the radiation balance, especially in the Arctic where climate change is significantly faster compared to lower latitudes. The interaction between aerosol and radiation can be either direct (scattering and absorption) or indirect (aerosol serving as cloud condensation nuclei and ice nucleating particles). Aerosol optical properties can be provided by Lidar (Light Detection and Ranging) systems with high spatial and temporal resolution. In this study, we utilize data from a ground-based Lidar system located in Ny-Ålesund, Spitsbergen and an air-borne system installed onboard the research aircraft Polar5. Our focus is on a rare event of elevated aerosol layers, which persistently appeared over two different parts of the European Arctic during PAMARCMiP (Polar Air-borne Measurements and Arctic Regional Climate Model Simulation Project) campaign in spring 2018. Results show that the detected layers exhibit similar optical properties, namely aerosol backscatter coefficient, which is indicative of aerosol abundance and aerosol depolarization ratio, which is an indicator of the aerosol shape. The main hypothesis is that although the existence of those layers is rare, they impact on the radiation budget of the Arctic. In the next steps of our research, we will investigate the occurrence of similar aerosol layers in the springtime of previous years using long-term measurements from the Lidar system located in Ny-Ålesund. Our goal is to assess the effect of different aerosol layers on the surface radiation budget and gain a better understanding of their role in the amplified Arctic climate change, utilizing radiation measurements from the Ny-Ålesund BSRN (Baseline Surface Radiation Network) station.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
    Format: application/pdf
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