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  • Blackwell Science Inc  (4)
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  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Lobose amoebae are abundant free-living protists and important pathogenic agents, yet their evolutionary history and position in the universal tree of life are poorly known. Molecular data for lobose amoebae are limited to a few species, and all phylogenetic studies published so far lacked representatives of many of their taxonomic groups. Here we analyse actin and small-subunit ribosomal RNA (SSU rRNA) gene sequences of a broad taxon sampling of naked, lobose amoebae. Our results support the existence of a monophyletic Amoebozoa clade, which comprises all lobose amoebae examined so far, as well as the amitochondriate pelobionts and entamoebids, and the slime molds. Both actin and SSU rRNA phylogenies distinguish two well-defined clades of amoebae, the “Gymnamoebia sensu stricto” and the Archamoebae (pelobionts+entamoebids), and one weakly supported and ill-resolved group comprising some naked, lobose amoebae and the Mycetozoa.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: In his grand monography of Radiolaria, Ernst Haeckel originally placed Phaeodarea within the class Radiolaria, together with Acantharea and Polycystinea. Cytological and ultrastructural studies, however, questioned the monophyly of Radiolaria, suggesting the independent evolutionary origin of the three taxa. Some recent molecular analyses based on small subunit ribosomal RNA (SSU rRNA) sequences challenged this classification, supporting the sisterhood of Acantharea and Polycystinea. In order to further test the monophyly of all Haeckel's Radiolaria, and as no data on Phaeodarea were available, we sequenced the complete SSU rRNA gene of three Phaeodarea and three Polycystinea. Our analyses show that the monophyletic Phaeodarea clearly branch among Cercozoa, and confirm that Acantharea and Polycystinea share a common history. This result enhances the morphological variability within Cercozoa, a phylum already containing very heterogeneous groups of protists. Our study suggests that the ability to secrete SrSO4 and the organization of microtubules inside axopodia are better phylogenetic markers than the simple presence of a central capsule and axopodia.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Over the past few years, the use of cultivation-independent techniques to detect eukaryotic diversity has proven to be a powerful approach. Based on small-subunit ribosomal RNA (SSU rRNA) gene analyses, these studies have revealed the existence of an unexpected variety of new phylotypes. Some of them do not seem to be related to any molecularly described lineage, and have been proposed to represent novel eukaryotic kingdoms. In order to critically review the evolutionary importance of this novel high-level eukaryotic diversity and to test the potential technical and analytical pitfalls and limitations of eukaryotic environmental DNA surveys (EES), we analysed 484 environmental SSU rRNA gene sequences, including 81 new sequences from sediments of the river Seymaz (Geneva, Switzerland). Based on a detailed screening of an exhaustive alignment of SSU rRNA gene sequences and the phylogenetic re-analysis of previously published sequences using Bayesian methods, our results suggest that the number of novel higher-level taxa revealed by previous EES was over-estimated. Three main sources of errors are responsible for this situation, namely (1) the presence of undetected chimeric sequences; (2) the misplacement of several fast evolving sequences; and (3) the incomplete sampling of described, but yet unsequenced eukaryotes. EES undoubtedly contribute to unravel many novel eukaryotic lineages, but there is no clear evidence for a spectacular increase of the diversity at a megaevolutionary level. After our re-analysis, we found only five candidate lineages of possible novel high-level eukaryotic taxa. To ascertain their taxonomic status, however, the organisms themselves have to be identified now.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Inc
    The @journal of eukaryotic microbiology 52 (2005), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Molecular sampling of the taxonomic diversity of the living world is nowadays a task of paramount importance. Heliozoa represents one of the major eukaryotic taxa, which remain significantly underrepresented in molecular databases. The term Heliozoa was coined to embrace organisms with a rounded body and stiff pseudopodia. Despite evidences from ultrastructural studies, which conclusively show the polyphyly of selected heliozoan groups, contemporary morphological systems retain Heliozoa as a monophyletic taxon. From the perspective of reconstructing the true phylogeny of Eukaryota, molecular approaches to analyse relationships within this large protist group are evidently necessary. Phylogenetic analysis of our data shows that the four heliozoan taxa branch either independently or within different eukaryotic phyla. The actinophryids (Actinosphaerium, Actinophrys) appear as a lineage of stramenopiles, while the desmothoracids (Clathrulina, Hedriocystis) branch within “core Cercozoa”. The position of both groups is strongly supported in all analyses and is congruent with ultrastructure-based taxonomic revisions. The centrohelids (Chlamydaster, Heterophrys, Pterocystis, and Raphidiophrys) do not seem to be related to any particular eukaryotic phylum, in agreement with a recent molecular study. The taxopodid Sticholonche was found to branch between Polycystinea and Acantharea, two classes of radiolarians. Results obtained in this study suggest that the heliozoan body form cannot be used as a diagnostic argument to unite Heliozoa. Instead, we discriminate between the three heliomorphic taxa of independent origin, Actinophryida, Desmothoracida and Sticholonche, and propose the novel higher rank taxon Centrohelida. The term Heliozoa should thus be used solely in historical context.
    Type of Medium: Electronic Resource
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