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  • 2010-2014  (4)
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  • 1
    Schlagwort(e): Life sciences. ; Electronic books.
    Materialart: Online-Ressource
    Seiten: 1 online resource (966 pages)
    Ausgabe: 2nd ed.
    ISBN: 9780387685724
    DDC: 579.35
    Sprache: Englisch
    Anmerkung: Intro -- BERGEY'S MANUAL® OFSystematicBacteriology -- Preface to volume 4 of the second editionof Bergey's Manual® of Systematic Bacteriology -- Contents -- Contributors -- On using the Manual -- Road map of the phyla Bacteroidetes,Spirochaetes, Tenericutes (Mollicutes),Acidobacteria, Fibrobacteres, Fusobac -- Taxonomic outlines of the phyla Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), ­Acidobacteria, Fibrobactere -- Phylum XIV. Bacteroidetes phyl. nov. -- Phylum XV. Spirochaetes Garrity and Holt 2001 -- Phylum XVI. Tenericutes Murray 1984a, 356VP (Effective publication: Murray 1984b, 33.) -- Phylum XVII. Acidobacteria phyl. nov. -- Phylum XVIII. Fibrobacteres Garrity and Holt 2001 -- Phylum XIX. Fusobacteria Garrity and Holt 2001, 140 -- Phylum XX. Dictyoglomi phyl. nov. -- Phylum XXI. Gemmatimonadetes Zhang, Sekiguchi, Hanada, Hugenholtz, Kim, Kamagata and Nakamura 2003, 1161VP -- Phylum XXII. Lentisphaerae Cho, Vergin, Morris and Giovannoni 2004a, 1005VP (Effective publication: Cho, Vergin, Morris and -- Phylum XXIII. Verrucomicrobia phyl. nov. -- Phylum XXIV. Chlamydiae Garrity and Holt 2001 -- Phylum XXV. Planctomycetes Garrity and Holt 2001, 137 emend. Ward (this volume) -- Author index -- Index of scientific names of Archaea and Bacteria.
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  • 2
    Online-Ressource
    Online-Ressource
    New York, NY :Springer New York,
    Schlagwort(e): Life sciences. ; Electronic books.
    Beschreibung / Inhaltsverzeichnis: This updated final volume in the best-selling series of reference works features descriptions of more than 200 genera in 49 families and includes a revised taxonomic outline for the Actinobacteria as well as many medically and industrially important taxa.
    Materialart: Online-Ressource
    Seiten: 1 online resource (2105 pages)
    Ausgabe: 2nd ed.
    ISBN: 9780387682334
    DDC: 579.3012
    Sprache: Englisch
    Anmerkung: Intro -- Bergey's Manual® of Systematic Bacteriology -- Preface to volume 5 of the second edition of Bergey's Manual ® of Systematic Bacteriology -- Contents -- Contributors -- On using the Manual -- Citation -- Arrangement of the Manual -- Articles -- a. Name of the genus. -- b. Name of author(s). -- c. Synonyms. -- d. Etymology of the name. -- e. Salient features. -- f. Type species. -- g. Further descriptive information. -- h. Enrichment and isolation. -- i. Maintenance procedures. -- j. Procedures for testing special characters. -- k. Differentiation of the genus from other genera. -- l. Taxonomic comments. -- m. Further reading. -- n. Differentiation of the species of the genus. -- o. List of species of the genus. -- p. Species incertae sedis. -- q. References. -- Tables -- Use of the Manual for determinative purposes -- Errors, comments, and suggestions -- Road map of the phylum Actinobacteria -- References -- Data analysis -- Taxonomic interpretation -- Phylum " Actinobacteria " -- Class " Actinobacteria " -- Order Actinomycetales and family Actinomycetaceae -- Order " Actinopolysporales " and family Actinopolysporaceae -- Order Bifidobacteriales and family Bifidobacteriaceae -- Order " Catenulisporales " and families Catenulisporaceae and Actinospicaceae -- Order " Corynebacteriales " -- Family Corynebacteriaceae -- Family Dietziaceae -- Family Mycobacteriaceae -- Family Nocardiaceae -- Family Segniliparaceae -- Family Tsukamurellaceae -- Order " Frankiales " -- Family Frankiaceae -- Family Acidothermaceae -- Family Cryptosporangiaceae -- Family Geodermatophilaceae -- Family Nakamurellaceae -- Family Sporichthyaceae -- Order " Glycomycetales " and family Glycomycetaceae -- Order " Jiangellales " and family Jiangellaceae -- Order " Kineosporiales " and family Kineosporiaceae -- Order Micrococcales -- Family Micrococcaceae. , Family Beutenbergiaceae -- Family Bogoriellaceae -- Family Brevibacteriaceae -- Family Cellulomonadaceae -- Family Dermabacteraceae -- Family Dermacoccaceae -- Family Dermatophilaceae -- Family Intrasporangiaceae -- Family Jonesiaceae -- Family Microbacteriaceae -- Family Promicromonosporaceae -- Family Rarobacteraceae -- Family Ruaniaceae -- Family Sanguibacteraceae -- Order " Micromonosporales " and family Micromonosporaceae -- Order " Propionibacteriales " -- Family Propionibacteriaceae -- Family Nocardioidaceae -- Order " Pseudonocardiales " and family Pseudonocardiaceae -- Order " Streptomycetales " and family Streptomycetaceae -- Order " Streptosporangiales " -- Family Streptosporangiaceae -- Family Nocardiopsaceae -- Family Thermomonosporaceae -- Order incertae sedis and the genus Thermobispora -- Class " Acidimicrobiia " and order Acidimicrobiales -- Class " Coriobacteriia " and order Coriobacteriales -- Class " Nitriliruptoria " -- Class " Rubrobacteria " and order Rubrobacterales -- Class " Thermoleophilia " -- Taxonomic outline of the phylum Actinobacteria -- Phylum XXVI. Actinobacteria phyl. nov. -- Taxonomic comments -- Class I. Actinobacteria Stackebrandt, Rainey and Ward-Rainey 1997, 483 -- Order I. Actinomycetales Buchanan 1917, 162 AL emend. Zhi, Li and Stackebrandt 2009, 594 -- Family I. Actinomycetaceae Buchanan 1918, 403 (emend. Stackebrandt, Rainey and Ward-Rainey 1997, 484), emend. Zhi, Li and Stackebrandt 2009, 594 VP -- Genus I. Actinomyces Harz 1877 , 133 AL emend. Georg, Pine and Gerencser 1969 , 292 VP -- Further descriptive information -- Phylogeny. -- Cell morphology. -- Cell-wall composition. -- Other chemotaxonomic characteristics. -- Fine structure. -- Cultural characteristics. -- Life cycle. -- Nutrition and growth conditions. -- Metabolism and metabolic pathways. -- Adherence mechanisms. , 16S rRNA gene sequence and other molecular data. -- Mutants, plasmids, phages, and bacteriocins. -- Antigenic structure. -- Susceptibility to antibiotics and various chemical compounds. -- Trace element requirements. -- Pathogenicity. -- Human diseases and impairments. -- Animal diseases. -- Ecology. -- Enrichment and isolation procedures -- Maintenance procedures -- Procedures for testing of special characters -- Differentiation of the genus Actinomyces from other genera -- Taxonomic comments -- Further reading -- Identification and descriptive characteristics of Actinomyces species -- Genus II. Actinobaculum Lawson, Falsen, Åkervall, Vandamme and Collins 1997, 902 VP -- Further descriptive information -- Isolation procedures -- Maintenance procedures -- Taxonomic comments -- Differentiation of the genus Actinobaculum from other genera -- Differentiation of species of the genus Actinobaculum -- Genus III. Arcanobacterium Collins, Jones and Schofield 1983, 438 VP (Effective publication: Collins, Jones and Schofield 1982b, 1280.), emend. Lehnen, Busse, Frölich, Krasinska, Kämpfer and Speck 2006, 864 VP -- Further descriptive information -- Phylogeny. -- Cell morphology. -- Cell-wall composition. -- Menaquinone composition. -- Polar lipids. -- Fatty acid composition. -- Peptidoglycan composition. -- Metabolism and metabolic pathways. -- Pathogenicity. -- Human infections. -- Animal infections. -- Antigenic structure. -- Virulence factors. -- Susceptibility to antibiotics. -- Habitat and ecology. -- Isolation, enrichment and maintenance procedures -- Differentiation of the genus Arcanobacterium from other genera -- Taxonomic comments -- Further reading -- Identification and descriptive characteristics of Arcanobacterium species -- Genus IV. Mobiluncus Spiegel and Roberts 1984a, 180 VP emend. Hoyles, Collins, Falsen, Nikolaitchouk and McCartney 2004. , Further descriptive information -- Phylogeny. -- Cell-wall composition. -- Fatty acids. -- Flagella. -- Colonial and cultural characteristics. -- Nutrition and growth conditions. -- Antibodies. -- Antibiotic sensitivity. -- Ecology -- Association with BV. -- Prevalence in healthy women. -- Role in pre-term delivery. -- Presence in men. -- Extragenital infections. -- Hosts other than humans. -- Pathogenicity. -- Potential virulence factors. -- Enrichment and isolation procedures -- Differentiation of the genus Mobiluncus from other genera -- Taxonomic comments -- Further reading -- Differentiation of the species of the genus Mobiluncus -- Genus V. Varibaculum Hall, Collins, Lawson, Hutson, Falsen, Inganas and Duerden 2003e, 644 VP -- Further descriptive information -- Isolation procedures -- Maintenance procedures -- Procedures for testing special characters -- Commercially available identification systems. -- Amplified 16S rDNA restriction analysis (ARDRA). -- Differentiation of the genus Varibaculum from other genera -- Taxonomic comments -- References -- Further descriptive information -- Key to the genera of the family Actinomycetaceae -- List of species of the genus Actinomyces -- Species incertae sedis -- List of species of the genus Actinobaculum -- List of species of the genus Arcanobacterium -- List of species of the genus Mobiluncus -- List of species of the genus Varibaculum -- Order II. Actinopolysporales ord. nov. -- References -- Family I. Actinopolysporaceae Zhi, Li and Stackebrandt 2009, 595 VP -- Genus I. Actinopolyspora Gochnauer, Leppard, Komaratat, Kates, Novitsky and Kushner 1975 , 1510 AL -- Further descriptive information -- Phylogeny. -- Cell morphology. -- Fine structure. -- Colony morphology. -- Chemotaxonomy. -- Nutrition and growth conditions. -- Metabolism and genetics. -- Antibiotic sensitivity. -- Ecology. , Isolation procedures -- Maintenance procedures -- Differentiation of the genus Actinopolyspora from other genera -- Taxonomic comments -- Differentiation of the species of the genus Actinopolyspora -- List of species of the genus Actinopolyspora -- Species incertae sedis -- References -- Order III. Bifidobacteriales Stackebrandt, Rainey and Ward-Rainey 1997, 487 VP -- References -- Family I. Bifidobacteriaceae Stackebrandt, Rainey and Ward-Rainey 1997, 487 VP -- Genus I. Bifidobacterium Orla-Jensen 1924 , 472 AL -- Further descriptive information -- Phylogeny. -- Cell morphology. -- Cell-wall composition. -- Fine structure. -- Nutrition and growth conditions. -- Anaerobiosis. -- Metabolism and metabolic pathways. -- Urease activity. -- Nitrate reduction. -- Genetics. -- Plasmids. -- Antibiotic or drug sensitivity. -- Bacteriocins. -- Pathogenicity. -- Ecology. -- Bifidobacteria as health-promoting agents: probiotic, prebiotic, and symbiotic substances. -- Isolation procedures -- Maintenance procedures -- Enzymes used for species and group differentiation -- Transaldolases. -- 6-Phosphogluconate dehydrogenases (6PGD). -- Procedures for testing special identification characteristics -- F6PPK test. -- Classical procedure. -- Modified procedure. -- Differentiation of the species of the genus Bifidobacterium -- List of species of the genus Bifidobacterium -- Genus II. Aeriscardovia Simpson, Ross, Fitzgerald and Stanton 2004 , 405 VP -- Further descriptive information -- Phylogeny. -- Anaerobiosis. -- Maintenance procedures -- List of species of the genus Aeriscardovia -- Genus III. Alloscardovia Huys, Vancanneyt, D'Haene, Falsen, Wauters and Vandamme 2007 , 1445 VP -- Further descriptive information -- Maintenance procedures -- List of species of the genus Alloscardovia -- Genus IV. Gardnerella Greenwood and Pickett 1980 , 176 VP. , Further descriptive information.
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  • 3
    Publikationsdatum: 2020-02-12
    Beschreibung: Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences—the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The ‘environmental packages’ apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , peerRev
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  • 4
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © The Author(s), 2011. This is the author's version of the work. It is posted here by permission of Nature Publishing Group for personal use, not for redistribution. The definitive version was published in Nature Biotechnology 29 (2011): 415-420, doi:10.1038/nbt.1823.
    Beschreibung: Here we present a standard developed by the Genomic Standards Consortium (GSC) to describe marker gene sequences—the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The “environmental packages” apply to any sequence whose origin is known and can therefore be used in combination with MIMARKS or other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we establish the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity across the Tree of Life as it is currently being documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.
    Beschreibung: See Supplementary Note
    Repository-Name: Woods Hole Open Access Server
    Materialart: Preprint
    Format: application/pdf
    Format: application/vnd.ms-excel
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