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  • Schartau, Markus  (2)
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  • 1
    Online Resource
    Online Resource
    Copernicus GmbH ; 2020
    In:  Earth System Science Data Vol. 12, No. 3 ( 2020-08-14), p. 1775-1787
    In: Earth System Science Data, Copernicus GmbH, Vol. 12, No. 3 ( 2020-08-14), p. 1775-1787
    Abstract: Abstract. Controlled manipulation of environmental conditions within large enclosures in the ocean, so-called pelagic mesocosms, has become a standard method to explore potential responses of marine plankton communities to anthropogenic change. Among the challenges of interpreting mesocosm data is the often uncertain role of vertical mixing, which usually is not observed directly. To account for mixing nonetheless, two pragmatic assumptions are common: either that the water column is homogeneously mixed or that it is divided into two water bodies with a horizontal barrier inhibiting turbulent exchange. In this study, we present a model-based reanalysis of vertical turbulent diffusion in the mesocosm experiments PeECE III and KOSMOS 2013. Our diffusivity estimates indicate intermittent mixing events along with stagnating periods and yield simulated temperature and salinity profiles that are consistent with the observations. Here, we provide the respective diffusivities as a comprehensive data product in the Network Common Data Format (NetCDF). This data product will help to guide forthcoming model studies that aim at deepening our understanding of biogeochemical processes in the PeECE III and KOSMOS 2013 mesocosms, such as the CO2-related changes in marine carbon export. In addition, we make our model code available, providing an adjustable tool to simulate vertical mixing in any other pelagic mesocosm. The data product and the model code are available at https://doi.org/10.1594/PANGAEA.905311 (Mathesius et al., 2019).
    Type of Medium: Online Resource
    ISSN: 1866-3516
    Language: English
    Publisher: Copernicus GmbH
    Publication Date: 2020
    detail.hit.zdb_id: 2475469-9
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  • 2
    In: Biogeosciences, Copernicus GmbH, Vol. 20, No. 13 ( 2023-07-06), p. 2645-2669
    Abstract: Abstract. Global biogeochemical ocean models help to investigate the present and potential future state of the ocean, its productivity and cascading effects on higher trophic levels such as fish. They are often subjectively tuned against data sets of inorganic tracers and surface chlorophyll and only very rarely against organic components such as particulate organic carbon or zooplankton. The resulting uncertainty in biogeochemical model parameters (and parameterisations) associated with these components can explain some of the large spread of global model solutions with regard to the cycling of organic matter and its impacts on biogeochemical tracer distributions, such as oxygen minimum zones (OMZs). A second source of uncertainty arises from differences in the model spin-up length as, so far, there seems to be no agreement on the required simulation time that should elapse before a global model is assessed against observations. We investigated these two sources of uncertainty by optimising a global biogeochemical ocean model against the root-mean-squared error (RMSE) of six different combinations of data sets and different spin-up times. Besides nutrients and oxygen, the observational data sets also included phyto- and zooplankton, as well as dissolved and particulate organic phosphorus (DOP and POP, respectively). We further analysed the optimised model performance with regard to global biogeochemical fluxes, oxygen inventory and OMZ volume. Following the optimisation procedure, we evaluated the RMSE for all tracers located in the upper 100 m (except for POP, for which we considered the entire vertical domain), regardless of their consideration during optimisation. For the different optimal model solutions, we find a narrow range of the RMSE, between 14 % of the average RMSE after 10 years and 24 % after 3000 years of simulation. Global biogeochemical fluxes, global oxygen bias and OMZ volume showed a much stronger divergence among the models and over time than RMSE, indicating that even models that are similar with regard to local surface tracer concentrations can perform very differently when assessed against the global diagnostics for oxygen. Considering organic tracers in the optimisation had a strong impact on the particle flux exponent (Martin b) and may reduce much of the uncertainty in this parameter and the resulting deep particle flux. Independent of the optimisation setup, the OMZ volume showed a particularly sensitive response with strong trends over time, even after 3000 years of simulation time (despite the constant physical forcing); a high sensitivity to simulation time; and the highest sensitivity to model parameters arising from the tuning strategy setup (variation of almost 80 % of the ensemble mean). In conclusion, calibration against observations of organic tracers can help to improve global biogeochemical models even after short spin-up times; here especially, observations of deep particle flux could provide a powerful constraint. However, a large uncertainty remains with regard to global OMZ volume and its evolution over time, which can show very dynamic behaviour during the model spin-up, which renders temporal extrapolation to a final equilibrium state difficult if not impossible. Given that the real ocean shows variations on many timescales, the assumption of observations representing a steady-state ocean may require some reconsideration.
    Type of Medium: Online Resource
    ISSN: 1726-4189
    Language: English
    Publisher: Copernicus GmbH
    Publication Date: 2023
    detail.hit.zdb_id: 2158181-2
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