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  • 1
    In: Biogeosciences, Copernicus GmbH, Vol. 20, No. 13 ( 2023-07-06), p. 2645-2669
    Kurzfassung: Abstract. Global biogeochemical ocean models help to investigate the present and potential future state of the ocean, its productivity and cascading effects on higher trophic levels such as fish. They are often subjectively tuned against data sets of inorganic tracers and surface chlorophyll and only very rarely against organic components such as particulate organic carbon or zooplankton. The resulting uncertainty in biogeochemical model parameters (and parameterisations) associated with these components can explain some of the large spread of global model solutions with regard to the cycling of organic matter and its impacts on biogeochemical tracer distributions, such as oxygen minimum zones (OMZs). A second source of uncertainty arises from differences in the model spin-up length as, so far, there seems to be no agreement on the required simulation time that should elapse before a global model is assessed against observations. We investigated these two sources of uncertainty by optimising a global biogeochemical ocean model against the root-mean-squared error (RMSE) of six different combinations of data sets and different spin-up times. Besides nutrients and oxygen, the observational data sets also included phyto- and zooplankton, as well as dissolved and particulate organic phosphorus (DOP and POP, respectively). We further analysed the optimised model performance with regard to global biogeochemical fluxes, oxygen inventory and OMZ volume. Following the optimisation procedure, we evaluated the RMSE for all tracers located in the upper 100 m (except for POP, for which we considered the entire vertical domain), regardless of their consideration during optimisation. For the different optimal model solutions, we find a narrow range of the RMSE, between 14 % of the average RMSE after 10 years and 24 % after 3000 years of simulation. Global biogeochemical fluxes, global oxygen bias and OMZ volume showed a much stronger divergence among the models and over time than RMSE, indicating that even models that are similar with regard to local surface tracer concentrations can perform very differently when assessed against the global diagnostics for oxygen. Considering organic tracers in the optimisation had a strong impact on the particle flux exponent (Martin b) and may reduce much of the uncertainty in this parameter and the resulting deep particle flux. Independent of the optimisation setup, the OMZ volume showed a particularly sensitive response with strong trends over time, even after 3000 years of simulation time (despite the constant physical forcing); a high sensitivity to simulation time; and the highest sensitivity to model parameters arising from the tuning strategy setup (variation of almost 80 % of the ensemble mean). In conclusion, calibration against observations of organic tracers can help to improve global biogeochemical models even after short spin-up times; here especially, observations of deep particle flux could provide a powerful constraint. However, a large uncertainty remains with regard to global OMZ volume and its evolution over time, which can show very dynamic behaviour during the model spin-up, which renders temporal extrapolation to a final equilibrium state difficult if not impossible. Given that the real ocean shows variations on many timescales, the assumption of observations representing a steady-state ocean may require some reconsideration.
    Materialart: Online-Ressource
    ISSN: 1726-4189
    Sprache: Englisch
    Verlag: Copernicus GmbH
    Publikationsdatum: 2023
    ZDB Id: 2158181-2
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  • 2
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    Copernicus GmbH ; 2020
    In:  Biogeosciences Vol. 17, No. 12 ( 2020-06-18), p. 3057-3082
    In: Biogeosciences, Copernicus GmbH, Vol. 17, No. 12 ( 2020-06-18), p. 3057-3082
    Kurzfassung: Abstract. Global biogeochemical ocean models are often tuned to match the observed distributions and fluxes of inorganic and organic quantities. This tuning is typically carried out “by hand”. However, this rather subjective approach might not yield the best fit to observations, is closely linked to the circulation employed and is thus influenced by its specific features and even its faults. We here investigate the effect of model tuning, via objective optimisation, of one biogeochemical model of intermediate complexity when simulated in five different offline circulations. For each circulation, three of six model parameters have been adjusted to characteristic features of the respective circulation. The values of these three parameters – namely, the oxygen utilisation of remineralisation, the particle flux parameter and potential nitrogen fixation rate – correlate significantly with deep mixing and ideal age of North Atlantic Deep Water (NADW) and the outcrop area of Antarctic Intermediate Waters (AAIW) and Subantarctic Mode Water (SAMW) in the Southern Ocean. The clear relationship between these parameters and circulation characteristics, which can be easily diagnosed from global models, can provide guidance when tuning global biogeochemistry within any new circulation model. The results from 20 global cross-validation experiments show that parameter sets optimised for a specific circulation can be transferred between similar circulations without losing too much of the model's fit to observed quantities. When compared to model intercomparisons of subjectively tuned, global coupled biogeochemistry–circulation models, each with different circulation and/or biogeochemistry, our results show a much lower range of oxygen inventory, oxygen minimum zone (OMZ) volume and global biogeochemical fluxes. Export production depends to a large extent on the circulation applied, while deep particle flux is mostly determined by the particle flux parameter. Oxygen inventory, OMZ volume, primary production and fixed-nitrogen turnover depend more or less equally on both factors, with OMZ volume showing the highest sensitivity, and residual variability. These results show a beneficial effect of optimisation, even when a biogeochemical model is first optimised in a relatively coarse circulation and then transferred to a different finer-resolution circulation model.
    Materialart: Online-Ressource
    ISSN: 1726-4189
    Sprache: Englisch
    Verlag: Copernicus GmbH
    Publikationsdatum: 2020
    ZDB Id: 2158181-2
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  • 3
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    American Geophysical Union (AGU) ; 2023
    In:  Geophysical Research Letters Vol. 50, No. 13 ( 2023-07-16)
    In: Geophysical Research Letters, American Geophysical Union (AGU), Vol. 50, No. 13 ( 2023-07-16)
    Kurzfassung: Our model study confirms earlier findings that oxygen utilization rate (OUR) underestimates true respiration ( R true ) in mesopelagic ocean Despite OUR underestimate R true , OUR can adequately estimate long‐term changes in R true in the mesopelagic North Atlantic subtropical gyre OUR cannot adequately estimate climate‐driven changes in R true in the mesopelagic tropical South Atlantic where different water masses mix
    Materialart: Online-Ressource
    ISSN: 0094-8276 , 1944-8007
    Sprache: Englisch
    Verlag: American Geophysical Union (AGU)
    Publikationsdatum: 2023
    ZDB Id: 2021599-X
    ZDB Id: 7403-2
    SSG: 16,13
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  • 4
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    Copernicus GmbH ; 2017
    In:  Geoscientific Model Development Vol. 10, No. 1 ( 2017-01-09), p. 127-154
    In: Geoscientific Model Development, Copernicus GmbH, Vol. 10, No. 1 ( 2017-01-09), p. 127-154
    Kurzfassung: Abstract. Global biogeochemical ocean models contain a variety of different biogeochemical components and often much simplified representations of complex dynamical interactions, which are described by many ( ≈ 10 to  ≈ 100) parameters. The values of many of these parameters are empirically difficult to constrain, due to the fact that in the models they represent processes for a range of different groups of organisms at the same time, while even for single species parameter values are often difficult to determine in situ. Therefore, these models are subject to a high level of parametric uncertainty. This may be of consequence for their skill with respect to accurately describing the relevant features of the present ocean, as well as their sensitivity to possible environmental changes. We here present a framework for the calibration of global biogeochemical ocean models on short and long timescales. The framework combines an offline approach for transport of biogeochemical tracers with an estimation of distribution algorithm (Covariance Matrix Adaption Evolution Strategy, CMA-ES). We explore the performance and capability of this framework by five different optimizations of six biogeochemical parameters of a global biogeochemical model, simulated over 3000 years. First, a twin experiment explores the feasibility of this approach. Four optimizations against a climatology of observations of annual mean dissolved nutrients and oxygen determine the extent to which different setups of the optimization influence model fit and parameter estimates. Because the misfit function applied focuses on the large-scale distribution of inorganic biogeochemical tracers, parameters that act on large spatial and temporal scales are determined earliest, and with the least spread. Parameters more closely tied to surface biology, which act on shorter timescales, are more difficult to determine. In particular, the search for optimum zooplankton parameters can benefit from a sound knowledge of maximum and minimum parameter values, leading to a more efficient optimization. It is encouraging that, although the misfit function does not contain any direct information about biogeochemical turnover, the optimized models nevertheless provide a better fit to observed global biogeochemical fluxes.
    Materialart: Online-Ressource
    ISSN: 1991-9603
    Sprache: Englisch
    Verlag: Copernicus GmbH
    Publikationsdatum: 2017
    ZDB Id: 2456725-5
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  • 5
    Online-Ressource
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    Copernicus GmbH ; 2017
    In:  Geoscientific Model Development Vol. 10, No. 6 ( 2017-06-29), p. 2425-2445
    In: Geoscientific Model Development, Copernicus GmbH, Vol. 10, No. 6 ( 2017-06-29), p. 2425-2445
    Kurzfassung: Abstract. Conventional integration of Earth system and ocean models can accrue considerable computational expenses, particularly for marine biogeochemical applications. Offline numerical schemes in which only the biogeochemical tracers are time stepped and transported using a pre-computed circulation field can substantially reduce the burden and are thus an attractive alternative. One such scheme is the transport matrix method (TMM), which represents tracer transport as a sequence of sparse matrix–vector products that can be performed efficiently on distributed-memory computers. While the TMM has been used for a variety of geochemical and biogeochemical studies, to date the resulting solutions have not been comprehensively assessed against their online counterparts. Here, we present a detailed comparison of the two. It is based on simulations of the state-of-the-art biogeochemical sub-model embedded within the widely used coarse-resolution University of Victoria Earth System Climate Model (UVic ESCM). The default, non-linear advection scheme was first replaced with a linear, third-order upwind-biased advection scheme to satisfy the linearity requirement of the TMM. Transport matrices were extracted from an equilibrium run of the physical model and subsequently used to integrate the biogeochemical model offline to equilibrium. The identical biogeochemical model was also run online. Our simulations show that offline integration introduces some bias to biogeochemical quantities through the omission of the polar filtering used in UVic ESCM and in the offline application of time-dependent forcing fields, with high latitudes showing the largest differences with respect to the online model. Differences in other regions and in the seasonality of nutrients and phytoplankton distributions are found to be relatively minor, giving confidence that the TMM is a reliable tool for offline integration of complex biogeochemical models. Moreover, while UVic ESCM is a serial code, the TMM can be run on a parallel machine with no change to the underlying biogeochemical code, thus providing orders of magnitude speed-up over the online model.
    Materialart: Online-Ressource
    ISSN: 1991-9603
    Sprache: Englisch
    Verlag: Copernicus GmbH
    Publikationsdatum: 2017
    ZDB Id: 2456725-5
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  • 6
    Online-Ressource
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    Elsevier BV ; 2007
    In:  Deep Sea Research Part I: Oceanographic Research Papers Vol. 54, No. 9 ( 2007-9), p. 1593-1618
    In: Deep Sea Research Part I: Oceanographic Research Papers, Elsevier BV, Vol. 54, No. 9 ( 2007-9), p. 1593-1618
    Materialart: Online-Ressource
    ISSN: 0967-0637
    Sprache: Englisch
    Verlag: Elsevier BV
    Publikationsdatum: 2007
    ZDB Id: 1500309-7
    ZDB Id: 1146810-5
    SSG: 14
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 7
    Online-Ressource
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    American Geophysical Union (AGU) ; 2019
    In:  Journal of Advances in Modeling Earth Systems Vol. 11, No. 5 ( 2019-05), p. 1285-1308
    In: Journal of Advances in Modeling Earth Systems, American Geophysical Union (AGU), Vol. 11, No. 5 ( 2019-05), p. 1285-1308
    Kurzfassung: Calibrating parameterized models is important for model intercomparison Multiobjective optimization helps revealing dependencies between parameter values and model skills
    Materialart: Online-Ressource
    ISSN: 1942-2466 , 1942-2466
    Sprache: Englisch
    Verlag: American Geophysical Union (AGU)
    Publikationsdatum: 2019
    ZDB Id: 2462132-8
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  • 8
    Online-Ressource
    Online-Ressource
    American Geophysical Union (AGU) ; 2016
    In:  Geophysical Research Letters Vol. 43, No. 12 ( 2016-06-28), p. 6469-6477
    In: Geophysical Research Letters, American Geophysical Union (AGU), Vol. 43, No. 12 ( 2016-06-28), p. 6469-6477
    Kurzfassung: SO biological processes reduce the ocean's oxygen content, mainly in the deep ocean, by 14 to 19% SO nutrient trapping maintains higher oxygen levels in midlatitude to low‐latitude subsurface waters SO biological processes affect remote oxygen concentrations on decadal to centennial time scales
    Materialart: Online-Ressource
    ISSN: 0094-8276 , 1944-8007
    URL: Issue
    Sprache: Englisch
    Verlag: American Geophysical Union (AGU)
    Publikationsdatum: 2016
    ZDB Id: 2021599-X
    ZDB Id: 7403-2
    SSG: 16,13
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 9
    In: Biogeosciences, Copernicus GmbH, Vol. 14, No. 6 ( 2017-03-29), p. 1647-1701
    Kurzfassung: Abstract. To describe the underlying processes involved in oceanic plankton dynamics is crucial for the determination of energy and mass flux through an ecosystem and for the estimation of biogeochemical element cycling. Many planktonic ecosystem models were developed to resolve major processes so that flux estimates can be derived from numerical simulations. These results depend on the type and number of parameterizations incorporated as model equations. Furthermore, the values assigned to respective parameters specify a model's solution. Representative model results are those that can explain data; therefore, data assimilation methods are utilized to yield optimal estimates of parameter values while fitting model results to match data. Central difficulties are (1) planktonic ecosystem models are imperfect and (2) data are often too sparse to constrain all model parameters. In this review we explore how problems in parameter identification are approached in marine planktonic ecosystem modelling. We provide background information about model uncertainties and estimation methods, and how these are considered for assessing misfits between observations and model results. We explain differences in evaluating uncertainties in parameter estimation, thereby also discussing issues of parameter identifiability. Aspects of model complexity are addressed and we describe how results from cross-validation studies provide much insight in this respect. Moreover, approaches are discussed that consider time- and space-dependent parameter values. We further discuss the use of dynamical/statistical emulator approaches, and we elucidate issues of parameter identification in global biogeochemical models. Our review discloses many facets of parameter identification, as we found many commonalities between the objectives of different approaches, but scientific insight differed between studies. To learn more from results of planktonic ecosystem models we recommend finding a good balance in the level of sophistication between mechanistic modelling and statistical data assimilation treatment for parameter estimation.
    Materialart: Online-Ressource
    ISSN: 1726-4189
    Sprache: Englisch
    Verlag: Copernicus GmbH
    Publikationsdatum: 2017
    ZDB Id: 2158181-2
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  • 10
    Online-Ressource
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    Copernicus GmbH ; 2019
    In:  Biogeosciences Vol. 16, No. 15 ( 2019-08-15), p. 3095-3111
    In: Biogeosciences, Copernicus GmbH, Vol. 16, No. 15 ( 2019-08-15), p. 3095-3111
    Kurzfassung: Abstract. Particle aggregation determines the particle flux length scale and affects the marine oxygen concentration and thus the volume of oxygen minimum zones (OMZs) that are of special relevance for ocean nutrient cycles and marine ecosystems and that have been found to expand faster than can be explained by current state-of-the-art models. To investigate the impact of particle aggregation on global model performance, we carried out a sensitivity study with different parameterisations of marine aggregates and two different model resolutions. Model performance was investigated with respect to global nutrient and oxygen concentrations, as well as extent and location of OMZs. Results show that including an aggregation model improves the representation of OMZs. Moreover, we found that besides a fine spatial resolution of the model grid, the consideration of porous particles, an intermediate-to-high particle sinking speed and a moderate-to-high stickiness improve the model fit to both global distributions of dissolved inorganic tracers and regional patterns of OMZs, compared to a model without aggregation. Our model results therefore suggest that improvements not only in the model physics but also in the description of particle aggregation processes can play a substantial role in improving the representation of dissolved inorganic tracers and OMZs on a global scale. However, dissolved inorganic tracers are apparently not sufficient for a global model calibration, which could necessitate global model calibration against a global observational dataset of marine organic particles.
    Materialart: Online-Ressource
    ISSN: 1726-4189
    Sprache: Englisch
    Verlag: Copernicus GmbH
    Publikationsdatum: 2019
    ZDB Id: 2158181-2
    Standort Signatur Einschränkungen Verfügbarkeit
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