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  • 1
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    Bioenergetic Controls on Anaerobic Oxidation of Methane (AOM) in Coastal Marine Sediments: A Theoretical Analysis (2006)
    Kline Geology Laboratory
    In:  American Journal of Science, 306 (4). pp. 246-294.
    Details
    Publication Date: 2020-06-03
    Description: A kinetic-bioenergetic reaction model for the anaerobic oxidation of methane (AOM) in coastal marine sediments is presented. The model considers a fixed depth interval of sediments below the zone of bioturbation (the window-of-observation), subject to seasonal variations of temperature and inputs of organic substrates and sulfate. It includes (1) nine microbially-mediated reaction pathways involved in CH4 production/consumption; (2) an explicit representation of five functional microbial groups; and (3) bioenergetic limitations of the microbial metabolic pathways. Fermentation of organic substrates is assumed to produce hydrogen (H2) and acetate (Ac) as key reactive intermediates. Competition among the metabolic pathways is controlled by the relative kinetic efficiencies of the various microbial processes and by bioenergetic constraints. Model results imply that the functional microbial biomasses within the window-of-observation undergo little variation over the year, as a result of kinetic and thermodynamic buffering of the seasonal forcings. Furthermore, the microbial processes proceed at only small fractions of their maximum potential rates. These findings provide a theoretical justification for the approximation of steady-state microbial biomasses, which is frequently used in diagenetic modeling. In contrast, AOM rates show a strong seasonal evolution: AOM only becomes spontaneous in winter, when hydrogenotrophic sulfate reduction (hySR) sufficiently reduces the local H2 concentration. The bioenergetic limitation of AOM is thus a critical factor modulating this process in seasonally-forced nearshore marine sediments. A global sensitivity analysis based on a 2-level factorial design reveals that AOM rates are most sensitive to the kinetic parameters describing hySR and acetotrophic methanogenesis (acME). The growth and substrate uptake kinetics of AOM are unimportant, whereas the threshold value of ATP energy conservation for AOM is the most sensitive thermodynamic parameter. These results confirm that anaerobic methane oxidizing microorganisms are metabolizing close to their thermodynamic limit, with the energetic balance being controlled by the relative rates of hySR and acME. The removal of Ac by acME primarily allows more sulfate (SO42−) to be utilized for H2 oxidation, thereby promoting AOM.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.2475/ajs.306.4.246
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 2
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    Quantitative analysis of anaerobic oxidation of methane (AOM) in marine sediments: A modeling perspective (2011)
    Elsevier
    In:  Earth-Science Reviews, 106 (1-2). pp. 105-130.
    Details
    Publication Date: 2017-01-19
    Description: Recent developments in the quantitativemodeling of methane dynamics and anaerobic oxidation of methane (AOM) in marine sediments are critically reviewed. The first part of the review begins with a comparison of alternative kinetic models for AOM. The roles of bioenergetic limitations, intermediate compounds and biomass growth are highlighted. Next, the key transport mechanisms in multi-phase sedimentary environments affecting AOM and methane fluxes are briefly treated, while attention is also given to additional controls on methane and sulfate turnover, including organic matter mineralization, sulfur cycling and methane phase transitions. In the second part of the review, the structure, forcing functions and parameterization of published models of AOM in sediments are analyzed. The six-orders-of-magnitude range in rate constants reported for the widely used bimolecular rate law for AOM emphasizes the limited transferability of this simple kinetic model and, hence, the need for more comprehensive descriptions of the AOM reaction system. The derivation and implementation of more complete reaction models, however, are limited by the availability of observational data. In this context, we attempt to rank the relative benefits of potential experimental measurements that should help to better constrain AOM models. The last part of the review presents a compilation of reported depth-integrated AOM rates (ΣAOM). These rates reveal the extreme variability of ΣAOM in marine sediments. The model results are further used to derive quantitative relationships between ΣAOM and the magnitude of externally impressed fluid flow, as well as between ΣAOM and the depth of the sulfate–methane transition zone (SMTZ). This review contributes to an improved understanding of the global significance of the AOM process, and helps identify outstanding questions and future directions in the modeling of methane cycling and AOM in marine sediments.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1016/j.earscirev.2011.01.002
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 3
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    Remote quantification of methane fluxes in gassy marine sediments through seismic survey (2009)
    GSA (Geological Society of America)
    In:  Geology, 37 . pp. 235-238.
    Details
    Publication Date: 2019-10-24
    Description: A novel methodology for predicting upward diffusive fluxes of dissolved methane in gassy marine sediments is presented. The predicted fluxes are derived from a set of theoretical simulation data gener ated using a diagenetic reaction-transport model. The model calculates the upward methane flux for a given free gas depth (FGD) below the seafloor and a given in situ gas solubility, which together define the methane concentration gradient. Fluxes can thus be extracted from a nomogram of FGD and solubility parameter space. Because, in general, microorganisms anaerobically oxidize all dissolved methane before it can escape the sediment, the estimated fluxes are equivalent to the amount of methane trapped by this subsurface microbial barrier. A test of the approach using measured methane fluxes from Aarhus Bay, Denmark, reveals a statistically significant correlation between the observed and predicted fluxes. The predicted fluxes further show a low sensitivity toward enhanced sediment mixing by faunal activity, as well as the deposition flux and reactivity of organic matter. Therefore, only a limited amount of data at strategic coring sites is required to constrain the major physical and geochemical forcings for a particular study area in order to extrapolate fluxes at a regional scale. Because the FGD can be mapped over large areas of the seafloor from shipboard seismic survey, the new approach represents a means to estimate regional methane flux budgets for gassy sediments in a cost-efficient manner.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1130/G25323A.1
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 4
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    Methane efflux from marine sediments in passive and active margins: Estimations from bioenergetic reaction-transport simulations (2008)
    Elsevier
    In:  Earth and Planetary Science Letters, 265 . pp. 329-344.
    Details
    Publication Date: 2017-01-30
    Description: A simplified version of a kinetic–bioenergetic reaction model for anaerobic oxidation of methane (AOM) in marine sediments [Dale, A.W., Regnier, P., Van Cappellen, P., 2006. Bioenergetic controls on anaerobic oxidation of methane (AOM) in coastal marine sediments: a theoretical analysis. Am. J. Sci. 306, 246–294.] is used to assess the impact of transport processes on biomass distributions, AOM rates and methane release fluxes from the sea floor. The model explicitly represents the functional microbial groups and the kinetic and bioenergetic limitations of the microbial metabolic pathways involved in AOM. Model simulations illustrate the dominant control exerted by the transport regime on the activity and abundance of AOM communities. Upward fluid flow at active seep systems restricts AOM to a narrow subsurface reaction zone and sustains high rates of methane oxidation. In contrast, pore-water transport dominated by molecular diffusion leads to deeper and broader zones of AOM, characterized by much lower rates and biomasses. Under steady-state conditions, less than 1% of the upward dissolved methane flux reaches the water column, irrespective of the transport regime. However, a sudden increase in the advective flux of dissolved methane, for example as a result of the destabilization of methane hydrates, causes a transient efflux of methane from the sediment. The benthic efflux of dissolved methane is due to the slow growth kinetics of the AOM community and lasts on the order of 60 years. This time window is likely too short to allow for a significant escape of pore-water methane following a large scale gas hydrate dissolution event such as the one that may have accompanied the Paleocene/Eocene Thermal Maximum (PETM).
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1016/j.epsl.2007.09.026
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 5
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    Arsenic Bioremediation by Biogenic Iron Oxides and Sulfides [Geomicrobiology] (2013)
    The American Society for Microbiology (ASM)
    Details
    Publication Date: 2013-06-21
    Description: Microcosms containing sediment from an aquifer in Cambodia with naturally elevated levels of arsenic in the associated groundwater were used to evaluate the effectiveness of microbially mediated production of iron minerals for in situ As remediation. The microcosms were first incubated without amendments for 28 days, and the release of As and other geogenic chemicals from the sediments into the aqueous phase was monitored. Nitrate or a mixture of sulfate and lactate was then added to stimulate biological Fe(II) oxidation or sulfate reduction, respectively. Without treatment, soluble As concentrations reached 3.9 ± 0.9 μM at the end of the 143-day experiment. However, in the nitrate- and sulfate-plus-lactate-amended microcosms, soluble As levels decreased to 0.01 and 0.41 ± 0.13 μM, respectively, by the end of the experiment. Analyses using a range of biogeochemical and mineralogical tools indicated that sorption onto freshly formed hydrous ferric oxide (HFO) and iron sulfide mineral phases are the likely mechanisms for As removal in the respective treatments. Incorporation of the experimental results into a one-dimensional transport-reaction model suggests that, under conditions representative of the Cambodian aquifer, the in situ precipitation of HFO would be effective in bringing groundwater into compliance with the World Health Organization (WHO) provisional guideline value for As (10 ppb or 0.13 μM), although soluble Mn release accompanying microbial Fe(II) oxidation presents a potential health concern. In contrast, production of biogenic iron sulfide minerals would not remediate the groundwater As concentration below the recommended WHO limit.
    Print ISSN: 0099-2240
    Electronic ISSN: 1098-5336
    Topics: Biology
    Published by The American Society for Microbiology (ASM)
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  • 6
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    Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II. Reaction-transport modelling (2008)
    Elsevier
    In:  Geochimica et Cosmochimica Acta, 72 . pp. 2880-2894.
    Details
    Publication Date: 2017-11-01
    Description: A steady-state reaction-transport model is applied to sediments retrieved by gravity core from two stations (S10 and S13) in the Skagerrak to determine the main kinetic and thermodynamic controls on anaerobic oxidation of methane (AOM). The model considers an extended biomass-implicit reaction network for organic carbon degradation, which includes extracellular hydrolysis of macromolecular organic matter, fermentation, sulfate reduction, methanogenesis, AOM, acetogenesis and acetotrophy. Catabolic reaction rates are determined using a modified Monod rate expression that explicitly accounts for limitation by the in situ catabolic energy yields. The fraction of total sulfate reduction due to AOM in the sulfate–methane transition zone (SMTZ) at each site is calculated. The model provides an explanation for the methane tailing phenomenon which is observed here and in other marine sediments, whereby methane diffuses up from the SMTZ to the top of the core without being consumed. The tailing is due to bioenergetic limitation of AOM in the sulfate reduction zone, because the methane concentration is too low to engender favorable thermodynamic drive. AOM is also bioenergetically inhibited below the SMTZ at both sites because of high hydrogen concentrations (∼3–6 nM). The model results imply there is no straightforward relationship between pore water concentrations and the minimum catabolic energy needed to support life because of the highly coupled nature of the reaction network. Best model fits are obtained with a minimum energy for AOM of ∼11 kJ mol−1, which is within the range reported in the literature for anaerobic processes.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1016/j.gca.2007.11.039
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 7
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    Global phosphorus retention by river damming [Environmental Sciences] (2015)
    National Academy of Sciences
    Details
    Publication Date: 2015-12-24
    Description: More than 70,000 large dams have been built worldwide. With growing water stress and demand for energy, this number will continue to increase in the foreseeable future. Damming greatly modifies the ecological functioning of river systems. In particular, dam reservoirs sequester nutrient elements and, hence, reduce downstream transfer of nutrients...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
    Published by National Academy of Sciences
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  • 8
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    Influence of dormancy on microbial competition under intermittent substrate supply: insights from model simulations (2016)
    Oxford University Press
    Details
    Publication Date: 2016-04-23
    Description: Most natural environments are characterized by frequent changes of their abiotic conditions. Microorganisms can respond to such changes by switching their physiological state between activity and dormancy allowing them to endure periods of unfavorable abiotic conditions. As a consequence, the competitiveness of microbial species is not simply determined by their growth performance under favorable conditions but also by their ability and readiness to respond to periods of unfavorable environmental conditions. The present study investigates the relevance of factors controlling the abundance and activity of individual bacterial species competing for an intermittently supplied substrate. For this purpose, numerical experiments were performed addressing the response of microbial systems to regularly applied feeding pulses. Simulation results show that community dynamics may exhibit a non-trivial link to the frequency of the external constraints and that for a certain combination of these environmental conditions coexistence of species is possible. The ecological implication of our results is that even non-dominant, neglected species can have a strong influence on realized species composition of dominant key species, due to their invisible presence enable the coexistence between important key species and by this affecting provided function of the system.
    Print ISSN: 0168-6496
    Electronic ISSN: 1574-6941
    Topics: Biology
    Published by Oxford University Press
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  • 9
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    Legacy nitrogen may prevent achievement of water quality goals in the Gulf of Mexico (2018)
    American Association for the Advancement of Science (AAAS)
    In: Science
    Details
    Publication Date: 2018-04-27
    Description: In August 2017, the Gulf of Mexico’s hypoxic zone was declared to be the largest ever measured. It has been estimated that a 60% decrease in watershed nitrogen (N) loading may be necessary to adequately reduce eutrophication in the Gulf. However, to date there has been no rigorous assessment of the effect of N legacies on achieving water quality goals. In this study, we show that even if agricultural N use became 100% efficient, it would take decades to meet target N loads due to legacy N within the Mississippi River basin. Our results suggest that both long-term commitment and large-scale changes in agricultural management practices will be necessary to decrease Mississippi N loads and to meet current goals for reducing the size of the Gulf hypoxic zone.
    Keywords: Ecology, Geochemistry, Geophysics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Geosciences , Computer Science , Medicine , Natural Sciences in General , Physics
    Published by American Association for the Advancement of Science (AAAS)
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  • 10
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    Carbon release and transformation from coastal peat deposits controlled by submarine groundwater discharge: a column experiment study (2020)
    In:  Limnology and Oceanography
    Details
    Publication Date: 2020-12-14
    Description: Although the majority of coastal sediments consist of sandy material, in some areas marine ingression caused the submergence of terrestrial carbon‐rich peat soils. This affects the coastal carbon balance, as peat represents a potential carbon source. We performed a column experiment to better understand the coupled flow and biogeochemical processes governing carbon transformations in submerged peat under coastal fresh groundwater (GW) discharge and brackish water intrusion. The columns contained naturally layered sediments with and without peat (organic carbon content in peat 39 ± 14 wt%), alternately supplied with oxygen‐rich brackish water from above and oxygen‐poor, low‐saline GW from below. The low‐saline GW discharge through the peat significantly increased the release and ascent of dissolved organic carbon (DOC) from the peat (δ13CDOC − 26.9‰ to − 27.7‰), which was accompanied by the production of dissolved inorganic carbon (DIC) and emission of carbon dioxide (CO2), implying DOC mineralization. Oxygen respiration, sulfate (urn:x-wiley:00243590:media:lno11438:lno11438-math-0001) reduction, and methane (CH4) formation were differently pronounced in the sediments and were accompanied with higher microbial abundances in peat compared to sand with urn:x-wiley:00243590:media:lno11438:lno11438-math-0002‐reducing bacteria clearly dominating methanogens. With decreasing salinity and urn:x-wiley:00243590:media:lno11438:lno11438-math-0003 concentrations, CH4 emission rates increased from 16.5 to 77.3 μmol m−2 d−1 during a 14‐day, low‐saline GW discharge phase. In contrast, oxygenated brackish water intrusion resulted in lower DOC and DIC pore water concentrations and significantly lower CH4 and CO2 emissions. Our study illustrates the strong dependence of carbon cycling in shallow coastal areas with submerged peat deposits on the flow and mixing dynamics within the subterranean estuary.
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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