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  • 1
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: A mesocosm experiment was performed to study the influence of nutrients on activity and diversity of bacterial assemblages from the Mediterranean Sea. Changes in the diversity of the predominant bacterial populations were monitored by DGGE fingerprinting of PCR products derived from 16S rRNA encoding genes. Fluctuations in the diversity of the most active populations was inferred by performing the DGGE fingerprinting on the basis of the cellular rRNA after reverse transcription and PCR amplification. DNA-derived DGGE patterns obtained from duplicate control and nutrient-enriched mesocosms showed differences in the development of the bacterial communities between control and nutrient-enriched experimental mesocosms. Multidimensional scaling analysis of the DNA-derived DGGE fingerprints indicated that duplicate treatments were reproducible. DNA- and RNA-derived DGGE fingerprints of bacterial assemblages changed over time, showing that the composition of the bacterial assemblages, as well as the most active bacterial populations changed during different phases of the incubation. Sequences of predominant DGGE bands in RNA-derived patterns were similar to 16S rRNA gene sequences of members of the α-, γ- and δ-Proteobacteria and of the Cytophaga-Flavobacterium-Bacteroides phylum (CFB). Bands corresponding to Ruegeria-like bacteria and members of the CFB became especially dominant during the course of incubation, suggesting that these populations were important contributors to bacterial production and activity in the post-grazing phase of the experiment.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Quantitative and qualitative changes in bacterial communities from the Mediterranean Sea were compared in duplicate batch mesocosms with or without addition of inorganic nutrients. Methods including traditional microbial ecology techniques, molecular biology and flow cytometry were combined to determine abundances, production, cell size, activity, culturability and taxonomic diversity of bacterial cells. Addition of nutrients and confinement resulted in an increase of bacterial densities which were rapidly controlled by protozoan grazing. Changes in bacterial activity and morphology were observed during the growth phase of bacteria and under grazing pressure. The proportion of medium-size and culturable cells increased during the growth phase. These cells were preferentially consumed by grazers resulting in a strong limitation of bacterial production. As a consequence of the grazing pressure, large cells were produced and contributed to the remaining bacterial productivity after grazing. Grazing had an effect on the taxonomic composition of bacterial communities by preferentially eliminating γ-Proteobacteria, α-Proteobacteria were preserved. It seems that some species from the genera Ruegeria and Cytophaga may have developed defence strategies to escape predation.
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 29 (1999), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Flow cytometric (FCM) counts of bacteria stained with SYTO 13, a cyanine dye, were highly correlated with DAPI epifluorescence microscopic counts in coastal seawater samples. Fluorescence intensity of stained cells appeared to depend on nucleic acid content and on the polarization of cell membranes. Right angle light scatter values of bacterial populations were clearly related to cell size. By FCM analysis of SYTO 13-stained samples from a batch mesocosm of Mediterranean seawater, several bacterial clusters having different apparent sizes and physiological status were discriminated showing that FCM analysis allows key cell categories to be followed for understanding bacterial community dynamics.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 22 (1997), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The succession of the physiological states of Salmonella typhimurium cells under starvation-survival conditions in artificial seawater was investigated by flow cytometry and epifluorescence microscopy using direct examination of different cell functions. Measurements of substrate responsiveness (DVC method), real and potential respiration (redox dye 5-cyano-2,3-ditolyl tetrazolium chloride, CTC), membrane permeability (BacLight™ kit), as well as DNA content (Hoechst 33342 staining) reveal an important heterogeneity within the population, and suggest a progressive physiological cell alteration throughout the starvation process. The transition steps between culturable and prelytic cells are described.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Microbial ecology 12 (1986), S. 355-379 
    ISSN: 1432-184X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The process of wastewater treatment was studied by modeling the relationships between physical, chemical, and biological (bacteria, phytoplankton, zooplankton) components of the sewage treatment lagoons of an urban wastewater center, based upon a two-year sampling program. The models of interactions between variables were tested by path analysis. The path coefficients were computed from the results of ridge regression, instead of linear multiple regression. The results show that fecal coliforms were effectively controlled by the environmental variables included in the model, which have a cyclic seasonal behavior. This control grew stronger with distance from the input (R 2=0.71) to the output (R 2=0.88) of the treatment plant, resulting in effective elimination of most enteric bacteria. Simultaneously, the ecosystem's community of aerobic heterotrophic bacteria became more independent from the model's predictive variables, with increased distance from the sewage input, thus demonstrating its maturation as an autonomous community in the lagoon ecosystem. Consequences of modeling are discussed, with respect to the understanding of biological wastewater treatment mechanisms and ecosystem dynamics and to plant management.
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] SIR - Autotrophic communities of pico-plankton (cell size less than 2 im dia-meter), known to be dominated by prokaryotes1, are essential in the carbon cycle of estuaries2 and oceans1'3. Hall and Vincent report that in other nutrient-rich ecosystems, the eukaryotic forms of the picoplankton "can ...
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  • 7
    ISSN: 1432-184X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Time series of a population of fecal coliforms and a community of total viable counts were recorded during years 5 and 6 after the “birth” of an eutrophic aquatic ecosystem (sewage treatment lagoons). These time series were used to re-examine models, previously published, describing their temporal dynamics as well as the relationships between bacterial and environmental variables. The dynamics of the fecal coliforms and their relationships to the environment were unchanged; the fecal coliform abundances displayed an annual cycle with maximum reduction in numbers during the summer, which would be due at least partly to environmental variables (hypotheses of control by irradiance and pH, which have a seasonal behavior, are supported by the data). On the contrary, the total viable count dynamics moved towards a closer dependence on phytoplankton, from a situation of relative independence with respect to other biotic components of the ecosystem. Indeed during the first two years, only one of the abiotic variables in the model (the biological oxygen demand, which is an indicator of available organic matter) seemed to have an effect on the total viable counts. The behavior of these bacterial groups, measured during 1980–1982 and 1984–1986, shows that demographic and ecological laws founded on the observation of other organisms also apply to heterotrophic bacteria. A population, such as the fecal coliforms in the present study, has a limited ecological amplitude and is then more likely to react to environmental variables such as irradiance, pH, and phytoplanktonic metabolic products, whose bactericidal action is highest during the summer months and lowest during winter. On the other hand, a community such as that detected by the total viable counts of the present study is composed of many species and thus has a larger ecological amplitude. This makes it easier for the species to occupy the various available habitats and to maintain themselves through ecological succession and endogenous rhythms.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Springer
    Microbial ecology 7 (1981), S. 283-296 
    ISSN: 1432-184X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Microbial ecologists attempting to describe community structures through the use of synthetic parameters face enormous difficulties. These stem in part from the necessity of using standard taxonomic reference levels in a field where the species level is poorly defined. This paper presents an attempt to obviate this problem. A “functional evenness” index (E) is defined using information measures; it is based directly on the characteristics of the bacteria, as determined, for example, with the API 20B method. Comparisons of this index with classic structure indices, such as taxonomic evenness (Pielou) or systematic dominance (Hulburt), show that it behaves like an evenness index, while bypassing the taxonomic study required before computation of the classic indices. Its use is illustrated with samples of aerobic heterotrophic bacteria obtained from brackish lagoon sediments.
    Type of Medium: Electronic Resource
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