Description: N2O production rates from ammonium, nitrite and nitrate and nitrate reduction rates and ammonium oxidation rates from the top 400 m water depth off the coast of Peru sampled from R/V Meteor during M138 in June 2017.

Description: The open ocean is a major source of nitrous oxide (N2O), an atmospheric trace gas attributable to global warming and ozone depletion. Intense sea-to-air N2O fluxes occur in major oceanic upwelling regions such as the eastern tropical South Pacific (ETSP). The ETSP is influenced by the El Niño–Southern Oscillation that leads to inter-annual variations in physical, chemical, and biological properties in the water column. In October 2015, a strong El Niño event was developing in the ETSP; we conduct field observations to investigate (1) the N2O production pathways and associated biogeochemical properties and (2) the effects of El Niño on water column N2O distributions and fluxes using data from previous non-El Niño years. Analysis of N2O natural abundance isotopomers suggested that nitrification and partial denitrification (nitrate and nitrite reduction to N2O) were occurring in the near-surface waters; indicating that both pathways contributed to N2O effluxes. Higher-than-normal sea surface temperatures were associated with a deepening of the oxycline and the oxygen minimum layer. Within the shelf region, surface N2O supersaturation was nearly an order of magnitude lower than that of non-El Niño years. Therefore, a significant reduction of N2O efflux (75 %–95 %) in the ETSP occurred during the 2015 El Niño. At both offshore and coastal stations, the N2O concentration profiles during El Niño showed moderate N2O concentration gradients, and the peak N2O concentrations occurred at deeper depths during El Niño years; this was likely the result of suppressed upwelling retaining N2O in subsurface waters. At multiple stations, water-column inventories of N2O within the top 1000 m were up to 160 % higher than those measured in non-El Niño years, indicating that subsurface N2O during El Niño could be a reservoir for intense N2O effluxes when normal upwelling is resumed after El Niño.

Description: We present a dataset of dissolved methane (CH4) in the East China Sea (ECS) during five cruises in March, May, August, October and December 2011. CH4 distribution in this region showed pronounced spatial and seasonal variability due to the complex mixing of different water masses and other variables. Surface CH4 concentrations gradually decreased from the coast to the open sea, with maximum values occurring near Changjiang estuary or outside the Hangzhou Bay. The annual mean CH4 concentration of the surface layer was 9.1 ± 1.6 nmol L-1 in the coastal area, which was nearly twice as large as that in the open sea (4.3 ± 1.3 nmol L-1). CH4 was distributed evenly from the surface to the bottom in the shelf region during March and December, while it increased gradually with depth during May and October. CH4 depth profiles exhibited various distribution features along the coast, in the middle and on the edge of continental shelf. CH4 levels at the bottom were generally higher than at the surface during all seasons, indicating obvious CH4 sources from sediments. Incubation experiments of sediment cores onboard suggested that sediment release was an important source of CH4 in the water column of the ECS. We estimated that the annual average CH4 release rate from sediments was about 1.11 μmol·m-2·d-1 on the continental shelf of the ECS. The maximum CH4 concentration and sediment-water CH4 flux both occurred in summer, which might be related with the occurrence of hypoxia in the bottom water. Surface seawater of the ECS was oversaturated with CH4 relative to the atmosphere over most of the five cruises, indicating that the ECS was a net source of atmospheric CH4. The annual mean area-weighted sea-air flux density of CH4 in the ECS was estimated to be about 10.7 μmol·m-2·d-1 in 2011. Accordingly, an area-weighted, seasonally adjusted annual rate of CH4 efflux was determined to be 2.98 × 109 mol yr-1 (∼0.05 Tg CH4 yr-1) from the ECS to the atmosphere.

Description: The production of secondary metabolites by a new isolate of the purple sulfur bacterium Allochromatium vinosum, which had shown antibiotic activities during a preliminary study, revealed the production of several metabolites. Growth conditions suitable for the production of one of the compounds shown in the metabolite profile were established and compound 1 was purified. The molecular formula of compound 1 (C20H28O2) was determined by high resolution mass spectra, and its chemical structure by means of spectroscopic methods. The evaluation of these data revealed that the structure of the compound was identical to dehydroabietic acid, a compound known to be characteristically produced by conifer trees, but so far not known from bacteria, except cyanobacteria. The purified substance showed weak antibiotic activities against Bacillus subtilis and Staphylococcus lentus with IC50 values of 70.5 µM (±2.9) and 57.0 µM (±3.3), respectively.

Description: The oxygen minimum zone (OMZ) in the eastern tropical South Pacific Ocean is tightly connected to the coastal upwelling system off Peru. The high biological productivity off Peru is therefore, driven by the complex interplay between the amount of nutrients recycled by remineralisation processes in the OMZ and the upwelling which brings these nutrients to the surface layer. However, surprisingly little is known about organic matter cycling and its effects on biogeochemical processes in the OMZ off Peru. To this end we conducted a first comprehensive study on the role of organic matter for the biogeochemical processes and the maintenance of the OMZ off Peru. M138 combined measurements of marine biogeochemistry, microbiology, physical oceanography and air chemistry with foci on (i) the efficiency of the biological pump, (ii) the nitrogen cycle processes in the OMZ, (iii) the ventilation of the OMZ as well as (iv) the air/sea gas exchange across the ocean/atmosphere interface and (v) aerosol deposition. The METEOR cruise M138 was performed as part of the third phase of the SFB754 'Climate-Biogeochemistry Interactions in the Tropical Ocean' (www.sfb754.de).

Description: Coastal areas contribute significantly to the emissions of methane (CH4) from the ocean. In order to decipher its temporal variability in the whole water column, dissolved CH4 was measured on a monthly basis at the Boknis Eck Time-series Station (BE) located in the Eckernförde Bay (SW Baltic Sea) from 2006 to 2017. BE has a water depth of about 28 m and dissolved CH4 was measured at six water depths ranging from 0 to 25 m. In general CH4 concentrations increased with depth, indicating a sedimentary release of CH4. Pronounced enhancement of the CH4 concentrations in the bottom layer (15–25 m) was found during February, May–June and October. CH4 was not correlated with Chlorophyll a or O2 over the measurement period. Unusually high CH4 concentrations (of up to 696 nM) were sporadically observed in the upper layer (0–10 m) (e.g. in November 2013 and December 2014) and were coinciding with Major Baltic Inflow (MBI) events. Surface CH4 concentrations were always supersaturated throughout the monitoring period, indicating that the Eckernförde Bay is an intense but highly variable source of atmospheric CH4. We did not detect significant temporal trends in CH4 concentrations or emissions, despite of ongoing environmental changes such as warming and deoxygenation in the Eckernförde Bay. Overall, the CH4 variability at BE is driven by a complex interplay of various biological and physical processes.

Description: Oxygen-deficient zones (ODZs) are major sites of net natural nitrous oxide (N2O) production and emissions. In order to understand changes in the magnitude of N2O production in response to global change, knowledge on the individual contributions of the major microbial pathways (nitrification and denitrification) to N2O production and their regulation is needed. In the ODZ in the coastal area off Peru, the sensitivity of N2O production to oxygen and organic matter was investigated using 15N tracer experiments in combination with quantitative PCR (qPCR) and microarray analysis of total and active functional genes targeting archaeal amoA and nirS as marker genes for nitrification and denitrification, respectively. Denitrification was responsible for the highest N2O production with a mean of 8.7 nmol L−1 d−1 but up to 118±27.8 nmol L−1 d−1 just below the oxic–anoxic interface. The highest N2O production from ammonium oxidation (AO) of 0.16±0.003 nmol L−1 d−1 occurred in the upper oxycline at O2 concentrations of 10–30 µmol L−1 which coincided with the highest archaeal amoA transcripts/genes. Hybrid N2O formation (i.e., N2O with one N atom from NH+4 and the other from other substrates such as NO−2) was the dominant species, comprising 70 %–85 % of total produced N2O from NH+4, regardless of the ammonium oxidation rate or O2 concentrations. Oxygen responses of N2O production varied with substrate, but production and yields were generally highest below 10 µmol L−1 O2. Particulate organic matter additions increased N2O production by denitrification up to 5-fold, suggesting increased N2O production during times of high particulate organic matter export. High N2O yields of 2.1 % from AO were measured, but the overall contribution by AO to N2O production was still an order of magnitude lower than that of denitrification. Hence, these findings show that denitrification is the most important N2O production process in low-oxygen conditions fueled by organic carbon supply, which implies a positive feedback of the total oceanic N2O sources in response to increasing oceanic deoxygenation.