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  • 1
    Online Resource
    Online Resource
    Dordrecht :Springer Netherlands,
    Keywords: Bioluminescence. ; Chlorophyll. ; Aquatic sciences--Research. ; Electronic books.
    Description / Table of Contents: This book follows on from the first international conference on "chlorophyll fluorescence in the aquatic sciences" (AQUAFLUO 2007). It offers the first complete synthesis of chlorophyll fluorescence methods for the aquatic sciences.
    Type of Medium: Online Resource
    Pages: 1 online resource (331 pages)
    Edition: 1st ed.
    ISBN: 9789048192687
    Series Statement: Developments in Applied Phycology Series ; v.4
    Language: English
    Note: Intro -- Chlorophyll a Fluorescence in Aquatic Sciences -- Preface -- Contents -- Contributors -- Chapter 1: Chlorophyll Fluorescence Terminology: An Introduction -- 1 Introduction -- 2 Light and Absorption -- 3 Fluorescence -- 3.1 Fast Phase (O-J-I-P) -- 3.1.1 Additional Features -- 3.2 Slow Phase (S-M-T) -- 3.3 The Saturation Pulse Method -- 3.4 Quantum Yield for PSII (FPSII) -- 3.5 Quenching -- 4 Conclusion -- References -- Chapter 2: In Situ Measurement of Variable Fluorescence Transients -- 1 Introduction -- 2 Phytoplankton Variable Fluorescence In Situ -- 2.1 Dynamical Protocols for Stimulating Variable Fluorescence -- 2.2 The Practical Relevance of the Single-turnover Time Scale In Situ -- 2.3 Issues Related to the Marine Light Field -- 2.4 Apparent Effects Resulting from Assemblage Composition -- 2.5 Effects Due to Optical Properties of Natural Waters -- 3 Conclusions and Future Directions -- References -- Chapter 3: Overview of Fluorescence Protocols: Theory, Basic Concepts, and Practice -- 1 Introduction -- 2 Theoretical Background -- 2.1 The Fluorescing Properties of Chlorophyll a -- 2.2 Source of Fluorescence in Seawater and Mathematical Description of Fluorescence Emission -- 2.3 The Functional Organization of the Photosynthetic Apparatus -- 2.3.1 Photosystem II -- 2.3.2 The Photosynthetic Chain -- 2.4 Adaptation, Acclimation, Regulation of Phytoplankton -- 2.5 Fates of Absorbed Photons Within PSII -- 2.6 A Simple Model of In Vivo Processes In PSII At Room Temperature -- 2.6.1 Quantum Yield of Fluorescence -- 2.7 Charge Separation at PSII -- 2.8 Photochemical Quenching of Fluorescence -- 2.9 Non-photochemical Quenching of Fluorescence -- 2.9.1 Energy-dependent Non-photochemical Quenching -- 2.9.2 Quenching Due to State Transitions -- 2.9.3 Quenching Linked to Inhibition -- 2.9.4 Reaction Center Quenching. , 2.10 Transient Changes in Fluorescence -- 3 Protocols for Measurement of In Vivo Phytoplankton Fluorescence, and the Use of Chl a Fluorescence to Study Phytoplankton -- 3.1 The Determination of Biomass In Vivo -- 3.1.1 Basic Principle -- 3.1.2 Instruments and Protocols -- 3.1.3 Validity of the Underlying Assumptions -- 3.1.4 Examples -- 3.2 Spectrofluorometry -- 3.2.1 Basic Principle -- 3.2.2 Instruments and Protocols -- 3.2.3 Validity of the Underlying Assumptions -- 3.2.4 Examples -- 3.3 Sun-induced Chlorophyll Fluorescence -- 3.3.1 Validity of the Underlying Assumptions -- 3.3.2 Examples -- 3.4 Flow Cytometry -- 3.5 Laser Excitation and LIDAR Fluorometry -- 3.6 Variable Fluorescence -- 3.6.1 Basic Principle -- 3.6.2 Instruments and Protocols -- Use of DCMU -- Pulse Amplitude Modulation -- Pump-and-Probe -- Fast Repetition Rate -- 3.6.3 Validity of the Underlying Assumptions -- 3.6.4 Examples -- 4 The Use of Chlorophyll Fluorescence to Estimate Primary Production -- 4.1 Variable Fluorescence -- 4.1.1 If is Available (FRRF and Pump and Probe Protocol) -- 4.1.2 When is not Available (PAM Protocol) -- 4.2 Sun-induced Chlorophyll Fluorescence -- 5 Conclusion -- 6 List of Symbols -- References -- Chapter 4: Fluorescence as a Tool to Understand Changes in Photosynthetic Electron Flow Regulation -- 1 Introduction -- 2 Electron Usage in Photosynthesis -- 2.1 Alternative Electron Cycling (AEC) -- 2.2 Electron Usage to Produce New Biomass -- 3 Effect of Light Stress on Fluorescence Signatures and their Interpretation -- 4 Use of Chemicals for the Differentiation of Photosynthetic Processes -- 4.1 Inhibitors of Linear Electron Transport -- 4.2 Inhibitors of Cyclic Electron Transport -- 4.3 Inhibitors of Alternative Electron Cycling (AEC) -- 4.4 Inhibitors of CO2 Fixation -- 4.5 Electron Transport Uncouplers -- 4.6 Electron Acceptors -- References. , Chapter 5: Microscopic Measurements of the Chlorophyll a Fluorescence Kinetics -- 1 Introduction -- 2 Fluorescence Techniques in High Resolution -- 3 Applications of Fluorescence Kinetic Microscopy -- References -- Chapter 6: Estimating Aquatic Productivity from Active Fluorescence Measurements -- 1 Fluorescence as a Probe for Photosynthesis -- 2 Overview of the Theory of Calculating ETRPSII -- 2.1 Measuring fPSII¢ and Calculating ETR -- 2.2 Examining Changes to the Quantum Yield Under Actinic Light -- 3 Light Absorption by Photosystem II -- 3.1 Bio-Physical Measures of PSII Absorption and Calculationof Chlorophyll-Specific ETR -- 3.2 Bio-Optical Based Determinationsof PSII Absorption -- 4 Reconciling Active Fluorescence-based Estimates of Productivity with Gas Exchange -- 4.1 Practical Constraints in Comparing Fluorescence- and Gas Exchange-Based Productivity Measurements -- 4.2 Are ETRs Indicative of Gross O2 Evolution? -- 4.3 Estimating Net O2 Production and C-Fixation from ETRs -- 4.4 Reconciliation of ETRPSII : O2 : CO2 Estimates -- 5 Future Application of ETRs to Primary Productivity Studies -- References -- Chapter 7: Taxonomic Discrimination of Phytoplankton by Spectral Fluorescence -- 1 Introduction -- 2 The Principles of Taxonomy by Spectral Fluorescence -- 2.1 Energy Transfer Between Pigments -- 2.2 Taxonomic Differences in Fluorescence Spectra -- 2.3 Taxonomic Discrimination by Spectral Fluorescence -- 3 Variation in Chlorophyll-specific Fluorescence, FChl -- 3.1 Inter-Specific Variability -- 3.2 Intra-specific Variability -- 3.3 Short-Term Quenching -- 4 Optical Indices and Application of the SFS Approach in the Field -- 4.1 Bias in SFS by Background Absorption and Scattering -- 4.2 Quenching In Situ and Taxonomic Assessment -- 5 A Field Test of the SFS Approach -- 6 Conclusion -- References. , Chapter 8: Flow Cytometry in Phytoplankton Research -- 1 Introduction -- 2 Background and Historical Perspective -- 3 Select Research Applications -- 3.1 Picophytoplankton Community Structure and Dynamics -- 3.2 Time Resolved Pulses for Physiological and Ecological Studies -- 3.3 Cell Sorting for Physiology and Diversity -- 3.4 Interpretation of Optical Variability in the Ocean -- 4 Emerging Approaches and Applications -- References -- Chapter 9: The Use of the Fluorescence Signal in Studies of Seagrasses and Macroalgae -- 1 Introduction -- 2 Major Achievements Using the Chlorophyll a Fluorescence Signal in Seagrass and Macroalgae Studies -- 2.1 Quenching Analysis -- 2.2 Analysis of Quenching Components: Use of Chemicals -- 3 Protocols Used, Limitations and Specific Modifications for Aquatic Macrophytes -- 3.1 Determination of the Variation in Fv/Fm and DF/Fm¢ -- 3.2 Limitation of the Use of Rapid Light Curves (RLC) -- 3.3 The Importance of Photosynthesis Induction -- 3.4 Determination of Absorptance, PSII Effective Absorption Cross-Section and the Number of Reaction Centers -- 3.5 Use of Relative ETR Values (rETR) -- 3.6 The Use of Electron Transport Rates Values (ETR) as Descriptors of Gross Photosynthesis (GPS) -- 4 Final Comments -- References -- Chapter 10: Chlorophyll Fluorescence in Reef Building Corals -- 1 Introduction -- 2 Natural Patterns of Fluorescence -- 2.1 Multiple and Single Turnover Instrumentation -- 2.2 Non-Photochemical Quenching -- 3 Detecting Stress -- 4 Protocols and Pitfalls -- 4.1 Dark Acclimation, Sample Area and Related Matters -- 4.2 Electron Transport Rate -- 5 Conclusion -- References -- Chapter 11: Assessing Nutrient Status of Microalgae Using Chlorophyll a Fluorescence -- 1 Introduction -- 2 Defining Nutrient Limitation -- 3 The Effects of Nutrient Limitation on Phytoplankton -- 3.1 Nitrogen -- 3.2 Phosphorus. , 3.3 Iron -- 4 Measuring Nutrient Limitation -- 4.1 Nutrient Enrichment Bioassays -- 4.2 Chlorophyll a Fluorescence as a Measure of Nutrient Stress -- 4.3 Natural Population Enrichments and Chlorophyll a Fluorescence -- 5 NIFTS -- 5.1 What is a NIFT? -- 5.2 How to Measure NIFTs -- 5.3 The Characteristics of the NIFT Response are Dependent on the Limiting Nutrient -- 5.4 NIFT Responses of Different Taxa -- 5.5 Mechanisms Behind NIFTs -- 6 Conclusion -- References -- Chapter 12: The Application of Variable Chlorophyll Fluorescence to Microphytobenthic Biofilms -- 1 Introduction to Benthic Biofilms -- 2 The Effects of Subsurface Signal -- 2.1 Microphytobenthic Biofilms on Soft Sediments -- 2.2 Stromatolites - the effect of "layered" biofilms -- 2.3 Deconvolution of Depth Integrated Signals -- 3 Down Regulation Through Non-photochemical Quenching -- 3.1 NPQ and the Xanthophyll Cycle in Diatoms -- 3.2 NPQ in the Dark -- 4 The Quantification of the Microalgal Biomass Using Fluorescence -- 5 Calculation of Electron Transport Rate: ETR v rETR -- 5.1 Multiple and Single Turnover Methods -- 5.2 The MT-method -- 5.3 The ST-method -- 5.4 Assumptions and Uncertainties -- 5.5 Calculation of ETR in Microphytobenthos Studies -- 6 Light Response Curves -- 6.1 A Brief Overview of Methodology -- 6.2 Steady State Light Curves -- 6.3 Rapid Light Curves -- 6.4 Non-sequential Light Curves -- 6.5 Light Curves Summary -- 7 Comparison of Fluorescence with Other Methodologies -- 8 General Summary -- References -- Chapter 13: Chlorophyll Fluorescence Applications in Microalgal Mass Cultures -- 1 Preface -- 2 Historical Overview of Using Chl Fluorescence in Microalgal Mass Cultures -- 3 Microalgae Grown for Commercial Purposes and Cultivation Systems -- 4 Principles of Microalgae Mass Culturing -- 4.1 Culture Maintenance. , 5 Interpretation of Chl Fluorescence Parameters in MicroalgaeMass Cultures.
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Ltd
    Global change biology 11 (2005), S. 0 
    ISSN: 1365-2486
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geography
    Notes: The bleaching of corals in response to increases in temperature has resulted in significant coral reef degradation in many tropical marine ecosystems. This bleaching has frequently been attributed to photoinhibition of photosynthetic electron transport and the consequent photodamage to photosystem II (PSII) and the production of damaging reactive oxygen species (ROS) in the zooxanthellae (Symbiodinium spp.). However, these events may be because of perturbations of other processes occurring within the zooxanthellae or the host cells, and consequently constitute only secondary responses to temperature increase. The processes involved with the onset of photoinhibition of electron transport, photodamage to PSII and pigment bleaching in coral zooxanthellae are reviewed. Consideration is given to how increases in temperature might lead to perturbations of metabolic processes in the zooxanthellae and/or their host cells, which could trigger events leading to bleaching. It is concluded that production of ROS by the thylakoid photosynthetic apparatus in the zooxanthellae plays a major role in the onset of bleaching resulting from photoinhibition of photosynthesis, although it is not clear which particular ROS are involved. It is suggested that hydrogen peroxide generated in the zooxanthellae may have a signalling role in triggering the mechanisms that result in expulsion of zooxanthellae from corals.
    Type of Medium: Electronic Resource
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  • 3
    Publication Date: 2021-04-23
    Description: Accumulation of anthropogenic CO2 is significantly altering ocean chemistry. A range of biological impacts resulting from this oceanic CO2 accumulation are emerging, however the mechanisms responsible for observed differential susceptibility between organisms and across environmental settings remain obscure. A primary consequence of increased oceanic CO2 uptake is a decrease in the carbonate system buffer capacity, which characterises the system's chemical resilience to changes in CO2, generating the potential for enhanced variability in pCO2 and the concentration of carbonate [CO32‐], bicarbonate [HCO3‐] and protons [H+] in the future ocean. We conducted a meta‐analysis of 17 shipboard manipulation experiments performed across three distinct geographical regions that encompassed a wide range of environmental conditions from European temperate seas to Arctic and Southern oceans. These data demonstrated a correlation between the magnitude of natural phytoplankton community biological responses to short‐term CO2 changes and variability in the local buffer capacity across ocean basin scales. Specifically, short‐term suppression of small phytoplankton (〈10 μm) net growth rates were consistently observed under enhanced pCO2 within experiments performed in regions with higher ambient buffer capacity. The results further highlight the relevance of phytoplankton cell size for the impacts of enhanced pCO2 in both the modern and future ocean. Specifically, cell‐size related acclimation and adaptation to regional environmental variability, as characterised by buffer capacity, likely influences interactions between primary producers and carbonate chemistry over a range of spatio‐temporal scales.
    Type: Article , PeerReviewed
    Format: text
    Format: text
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  • 4
    Publication Date: 2023-10-26
    Description: Experts release a roadmap for harnessing the potential of assisted evolution to help save corals. The IPCC predicts that if warming reaches 2°C, 99% of all coral reefs will be lost in less than 30 years. It is clear that to ensure the future of corals, the highest priority must be reducing global greenhouse gas emissions. However, even with swift and substantial reductions in emissions, corals will continue to face increasing temperatures for the foreseeable future, which can result in extensive coral mortality and local extinction of some coral species. While recent studies have shown that corals may exhibit some degree of adaptation to ocean warming, it is unclear whether corals are able to survive the rate of temperature change during heat waves that will become more frequent under several climate change scenarios. If corals lack what it takes to naturally rapidly adapt to new environmental regimes, they may fail to survive a warming ocean. This is where assisted evolution could be a game-changer. Growing our understanding of the power of adaptation In January 2023, we held a workshop on assisted evolution co-organized with the Australian Institute of Marine Sciences (AIMS) as part of CORDAP’s Scoping Studies (a series of planning sessions and technology roadmap studies to shape our funding priorities). Our aim was to develop a visionary roadmap, offering recommendations on how to prioritise assisted evolution in R&D investment in the future. Assisted evolution is the use of human interventions to speed up the natural evolutionary process. It may allow coral species to adapt faster than they would if left unaided, allowing reefs and corals to keep better pace with the ocean’s environmental changes. The first step in creating this strategy was to pinpoint where we are now in our understanding regarding the potential and impacts of assisted evolution on enhancing coral tolerance to stress conditions like ocean warming. Our experts unanimously agreed that assisted evolution methods cannot be understood and evaluated without a solid foundational understanding of natural adaptation, and identified some knowledge gaps that can be closed with relatively minimal effort and others that will require substantial investment of time and resources. Key Findings: - Standardising methods, experimental designs, species selection guidelines, and terminologies will help to understand natural adaptation and assisted evolution more rapidly. - Long-term funding is critical to facilitate multigenerational studies, which are needed to deliver essential but largely missing information about coral evolution. Building the best pathway for research and investment This roadmap sets out tangible recommendations for future investment and research, to help fill critical knowledge gaps that could assist natural adaptation and evolution of coral reefs in a warming world. Overall, the roadmap recommends investment in a mixed portfolio of R&D, ranging from technologies with lower perceived risks to those with higher percieved risks and longer R&D horizons. This strategy is advised because of the uncertainty around future heating trajectories and thus requirements for enhancement of tolerance. The roadmap outlined four main areas of work that need to be undertaken: 1. Leading global coordination and synthesis. Recommendation: Building global infrastructure to support research would dramatically accelerate the generation of knowledge around the natural and assisted evolution of corals. This could include compiling and committing to a set of standards and methods that will allow more studies to be used in predictive models, as well as establishing a global resource-sharing network and database to facilitate meta-analysis and synthesis. 2. Optimising generation and use of knowledge. Recommendation: Make sure new studies are well designed and timely. Optimize published and future studies by characterizing relationships between heat stress metrics and other facets of coral fitness. Having funding set aside to be able to quickly respond to bleaching events will ensure vital knowledge is captured rather than lost if and when those events occur. 3. Filling critical knowledge gaps in multigenerational coral data in the laboratory and field. Recommendation: Given the slow-growing nature of coral, longer-term funding would allow researchers to gain critical knowledge needed to estimate the multi-generational benefits and risks of implementing assisted evolution methods in the wild. Standardised approaches repeated in different parts of the world would add confidence to generalise those results. 4. Supporting the advance of existing and new technologies. Recommendation: Methods that may yield a larger effect (e.g., gene editing, hybridisation between species, and assisted migration) are also potentially of greater risk and would need considerable R&D. Expanding support for some of the riskier long-term projects currently being overlooked, could potentially offer a greater return on investment, but should be balanced with continued investment in less risky technologies. CORDAP will be using these recommendations to prepare new accelerator program and we believe that they will assist academia in understanding gaps and needs for future research as well as helping to guide funding agencies on where their money will be most effective. The roadmap identifies the funding structures and research priorities that are most likely to yield the knowledge needed to ensure that assisted evolution methods can be implemented effectively. Ultimately, conserving and restoring coral reefs in warming climates will require an inclusive infrastructure involving many partners at a local, national, and international level.
    Type: Report , NonPeerReviewed
    Format: text
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  • 5
    Publication Date: 2016-10-16
    Description: Increased atmospheric CO 2 concentrations are driving changes in ocean chemistry at unprecedented rates resulting in ocean acidification, which is predicted to impact the functioning of marine biota, in particular of marine calcifiers. However, the precise understanding of such impacts relies on an analytical system that determines the mechanisms and impact of elevated p CO 2 on the physiology of organisms at scales from species to entire communities. Recent work has highlighted the need within experiments to control all aspects of the carbonate system to resolve the role of different inorganic carbon species on the physiological responses observed across taxa in real-time. Presently however, there are limited options available for continuous quantification of physiological responses, coupled with real-time calculation of the seawater carbonate chemistry system within microcosm environments. Here, we describe and characterise the performance of a novel p CO 2 membrane equilibrium system (the Membrane Inlet Infra-Red Gas Analyser, MI-IRGA) integrated with a continuous pH and oxygen monitoring platform. The system can detect changes in the seawater carbonate chemistry and determine organism physiological responses, while providing the user with real-time control over the microcosm system. We evaluate the systems control, response time and associated error, and demonstrate the flexibility of the system to operate under field conditions and within a laboratory. We use the system to measure physiological parameters (photosynthesis and respiration) for the corals Pocillipora damicornis and Porites cylindrica ; in doing so we present a novel dataset examining the interactive role of temperature, light and p CO 2 on the physiology of P. cylindrica .
    Electronic ISSN: 1541-5856
    Topics: Biology , Geosciences
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  • 6
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    PANGAEA
    In:  Supplement to: Suggett, David J; Hall-Spencer, Jason M; Rodolfo-Metalpa, Riccardo; Boatman, Toby G; Payton, Ross; Pettay, D Tye; Johnson, Vivienne R; Warner, Mark E; Lawson, Tracy (2012): Sea anemones may thrive in a high CO2 world. Global Change Biology, 18(10), 3015-3025, https://doi.org/10.1111/j.1365-2486.2012.02767.x
    Publication Date: 2023-02-24
    Description: Increased seawater pCO2, and in turn 'ocean acidification' (OA), is predicted to profoundly impact marine ecosystem diversity and function this century. Much research has already focussed on calcifying reef-forming corals (Class: Anthozoa) that appear particularly susceptible to OA via reduced net calcification. However, here we show that OA-like conditions can simultaneously enhance the ecological success of non-calcifying anthozoans, which not only play key ecological and biogeochemical roles in present day benthic ecosystems but also represent a model organism should calcifying anthozoans exist as less calcified (soft-bodied) forms in future oceans. Increased growth (abundance and size) of the sea anemone (Anemonia viridis) population was observed along a natural CO2 gradient at Vulcano, Italy. Both gross photosynthesis (PG) and respiration (R) increased with pCO2 indicating that the increased growth was, at least in part, fuelled by bottom up (CO2 stimulation) of metabolism. The increase of PG outweighed that of R and the genetic identity of the symbiotic microalgae (Symbiodinium spp.) remained unchanged (type A19) suggesting proximity to the vent site relieved CO2 limitation of the anemones' symbiotic microalgal population. Our observations of enhanced productivity with pCO2, which are consistent with previous reports for some calcifying corals, convey an increase in fitness that may enable non-calcifying anthozoans to thrive in future environments, i.e. higher seawater pCO2. Understanding how CO2-enhanced productivity of non- (and less-) calcifying anthozoans applies more widely to tropical ecosystems is a priority where such organisms can dominate benthic ecosystems, in particular following localized anthropogenic stress.
    Keywords: HAND; Mediterranean Sea; Mediterranean Sea Acidification in a Changing Climate; MedSeA; North_Volcano_Island; Sampling by hand
    Type: Dataset
    Format: application/zip, 5 datasets
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  • 7
    Publication Date: 2023-02-24
    Keywords: Corallinaceae; DEPTH, water; HAND; Mediterranean Sea; Mediterranean Sea Acidification in a Changing Climate; MedSeA; North_Volcano_Island; Sample comment; Sampling by hand; Site
    Type: Dataset
    Format: text/tab-separated-values, 378 data points
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  • 8
    Publication Date: 2023-02-24
    Keywords: Anemonia viridis; DATE/TIME; DEPTH, water; HAND; Mediterranean Sea; Mediterranean Sea Acidification in a Changing Climate; MedSeA; North_Volcano_Island; Sample comment; Sampling by hand; Sea urchin; Site
    Type: Dataset
    Format: text/tab-separated-values, 882 data points
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  • 9
    Publication Date: 2023-02-24
    Keywords: DEPTH, water; HAND; Mediterranean Sea; Mediterranean Sea Acidification in a Changing Climate; MedSeA; North_Volcano_Island; Sampling by hand; Site; Symbiodinium cell concentration
    Type: Dataset
    Format: text/tab-separated-values, 120 data points
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  • 10
    Publication Date: 2023-02-24
    Keywords: Calculated, Delta TCO2; DEPTH, water; Electron transfer rate, light-limited; Electron transfer rate, light-saturated; HAND; Maximum gross photosynthesis rate, carbon dioxide uptake; Mediterranean Sea; Mediterranean Sea Acidification in a Changing Climate; MedSeA; North_Volcano_Island; Pulse Amplitude Modulated fluorometer (Diving-PAM, Walz); Respiration rate, carbon dioxide; Sampling by hand; Saturation light intensity; Site
    Type: Dataset
    Format: text/tab-separated-values, 180 data points
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