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  • 1
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    Shear and turbulence production across subtidal channels (2007)
    Sears Foundation for Marine Research
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Sears Foundation for Marine Research, 2006. This article is posted here by permission of Sears Foundation for Marine Research for personal use, not for redistribution. The definitive version was published in Journal of Marine Research 64 (2006): 147-171, doi:10.1357/002224006776412359.
    Description: In intertidal regions with subtidal channels, effects of bathymetry on overlying flow vary greatly with tidal stage. Around low water when mudflats and marsh are exposed, flow is constrained to channels, but when water depths are greater, tidal forcing may not necessarily be aligned with meandering channel axes. Flow across the channel can generate strong shear and turbulence at the elevation of the channel banks and can significantly increase turbulent energy in the middle of the water column. Field observations in a mudflat channel of San Francisco Bay indicate that cross-channel shear regularly occurs there early in ebb tides. With increased freshwater flow, baroclinic forcing can enhance shear by decoupling flow between dense water flooding in the channel and fresher water ebbing above the channel banks. A water column numerical model with κ-ε turbulence closure is modified to represent the cross-channel shear production. Numerical results with uniform density indicate that turbulence production increases with the angle between the barotropic tidal forcing and the channel axis. When a longitudinal salinity gradient is imposed, cross-channel shear production contributes to breakdown of periodic stratification. Turbulence produced at the channel banks locally exceeds dissipation, and the excess energy is either lost to buoyancy or diffuses vertically to lower energy regions near the surface and near the bed. The balance among shear production, buoyancy production, and diffusion of turbulence depends on the flow angle and the strength of the longitudinal salinity gradient.
    Description: This research was funded by National Institutes of Health grant no. P42ES0475 from the National Institute of Environmental Health Sciences.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: 766568 bytes
    Format: application/pdf
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  • 2
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    Tidal and meteorological forcing of sediment transport in tributary mudflat channels (2007)
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Elsevier B.V., 2007. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Continental Shelf Research 27 (2007): 1510-1527, doi:10.1016/j.csr.2007.01.010.
    Description: Field observations of flow and sediment transport in a tributary channel through intertidal mudflats indicate that suspended sediment was closely linked to advection and dispersion of a tidal salinity front. During calm weather when tidal forcing was dominant, high concentrations of suspended sediment advected up the mudflat channel in the narrow region between salty water from San Francisco Bay and much fresher runoff from the small local watershed. Salinity and suspended sediment dispersed at similar rates through each tidal inundation, such that during receding ebbs the sediment pulse had spread spatially and maximum concentrations had decreased. Net sediment transport was moderately onshore during the calm weather, as asymmetries in stratification due to tidal straining of the salinity front enhanced deposition, particularly during weaker neap tidal forcing. Sediment transport by tidal forcing was periodically altered by winter storms. During storms, strong winds from the south generated wind waves and temporarily increased suspended sediment concentrations. Increased discharge down the tributary channels due to precipitation had more lasting impact on sediment transport, supplying both buoyancy and fine sediment to the system. Net sediment transport depended on the balance between calm weather tidal forcing and perturbations by episodic storms. Net transport in the tributary channel was generally off-shore during storms and during calm weather spring tides, and on-shore during calm weather neap tides.
    Description: The research was funded by National Institutes of Health grant P42ES0475 from the National Institute of Environmental Health Sciences. References
    Keywords: Sediment transport ; Intertidal sedimentation ; Salinity gradients ; Tidal inlets ; Topographic effects ; San Francisco Bay, California, USA
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
    Format: application/pdf
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  • 3
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    Biological communities in San Francisco Bay track large-scale climate forcing over the North Pacific (2010)
    AGU (American Geophysical Union)
    In:  Geophysical Research Letters, 37 (21). L21602.
    Details
    Publication Date: 2017-07-27
    Description: Long-term observations show that fish and plankton populations in the ocean fluctuate in synchrony with large-scale climate patterns, but similar evidence is lacking for estuaries because of shorter observational records. Marine fish and invertebrates have been sampled in San Francisco Bay since 1980 and exhibit large, unexplained population changes including record-high abundances of common species after 1999. Our analysis shows that populations of demersal fish, crabs and shrimp covary with the Pacific Decadal Oscillation (PDO) and North Pacific Gyre Oscillation (NPGO), both of which reversed signs in 1999. A time series model forced by the atmospheric driver of NPGO accounts for two-thirds of the variability in the first principal component of species abundances, and generalized linear models forced by PDO and NPGO account for most of the annual variability of individual species. We infer that synchronous shifts in climate patterns and community variability in San Francisco Bay are related to changes in oceanic wind forcing that modify coastal currents, upwelling intensity, surface temperature, and their influence on recruitment of marine species that utilize estuaries as nursery habitat. Ecological forecasts of estuarine responses to climate change must therefore consider how altered patterns of atmospheric forcing across ocean basins influence coastal oceanography as well as watershed hydrology.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1029/2010GL044774
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    OceanRep: Article in a Scientific Journal - peer-reviewed
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