GLORIA

GEOMAR Library Ocean Research Information Access

feed icon rss

Ihre E-Mail wurde erfolgreich gesendet. Bitte prüfen Sie Ihren Maileingang.

Leider ist ein Fehler beim E-Mail-Versand aufgetreten. Bitte versuchen Sie es erneut.

Vorgang fortführen?

Exportieren
Filter
Publikationsart
Schlagwörter
Verlag/Herausgeber
Erscheinungszeitraum
  • 1
    ISSN: 1574-6941
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: The process of enrichment and subsequently isolation of squalene degrading denitrifying bacteria has been developed. The enrichment method used in this study targeted denitrifying bacteria, therefore an initial enrichment incubation using nitrate amendments under anaerobic conditions was performed before squalene amendment. Denaturant gradient gel electrophoresis (DGGE) analysis of polymerase chain reaction (PCR)-amplified DNA fragments prepared from extracted DNA was used to compare the composition of bacterial communities at various steps of enrichment cultures and the diversity of the 80 isolated strains obtained by classical culture methods. After 8 months of anaerobic incubation, the squalene biodegradation rate reached 80%. The community composition changed substantially during the incubation time. The enrichment cultures were dominated by 12 phylotypes, of which eight corresponded to cultivatable strains. Their identities were established by sequencing V3–V5 16SrRNA PCR fragments directly or after excision of DGGE bands and comparing the sequences with those available in GenBank. Most of the isolates were Proteobacteria of the gamma subgroup; among them, seven novel denitrifying bacteria which were capable of using squalene as the sole carbon source, were isolated and characterized.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 2
    Digitale Medien
    Digitale Medien
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 194 (2001), S. 0 
    ISSN: 1574-6968
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: Marinobacter sp. strain CAB was cultivated with or without porous glass beads as solid support. Two substrates were used: the hydrophilic sodium lactate and a hydrophobic C18-isoprenoid ketone (6,10,14-trimethylpentadecan-2-one (TMP)). The substrate adsorption onto the beads was measured. Bacterial adhesion was determined by a direct count technique and amounted to 70% of total cells. In the immobilised cell cultures (ICC), generation times were 1.5 and 1.8 times shorter than in the planktonic cultures (FCC) with sodium lactate and with TMP, respectively. In ICC, the growth yields were lower (15.3FCC×109 and 0.8ICC×109 bacteria mg−1 of sodium lactate; 50FCC×109 and 35ICC×109 bacteria mg−1 of TMP). The mineralisation of substrates was estimated after mass spectrometric determination of the CO2 production rates of both free and immobilised cell cultures. The results indicated a higher specific CO2 production rate in the ICC with sodium lactate (3.1FCC±0.2 and 3.5ICC±0.3 nmol CO2 mg−1 protein min−1) but not in the ICC with TMP (1.9FCC±0.7 and 0.5ICC±0.3 nmol CO2 mg−1 protein min−1). The affinities for the two substrates were lower in the presence of the solid support (Km,ICC=18.2±0.2 μM and 37.1±2.0 μM, for sodium lactate and TMP, respectively) than without support (Km,FCC=8.5±1.5 μM and 8.4±1.2 μM, for sodium lactate and TMP, respectively). Moreover, the presence of a solid support showed a lower inhibition by the TMP (Ki,FCC=3.8±1.0 μM and Ki,ICC=12.2±2.5 μM) which may explain why the immobilised cell cultures degraded hydrophobic TMP more efficiently than the planktonic cultures.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 3
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Author(s), 2013. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Marine Chemistry 154 (2013): 34–45, doi:10.1016/j.marchem.2013.04.003.
    Beschreibung: Dissolved organic matter (DOM) is the largest active organic carbon reservoir in the ocean (662 Gt C), a major fraction (〉 95%) of which remains chemically uncharacterized. The concentration and isolation of DOM from seawater by ultrafiltration facilitates its chemical characterization by spectroscopic techniques. Using ultrafiltration, silver cation preparative chromatography and gas chromatography coupled with mass spectrometry (GC-MS), we identified 50 novel sugar compounds after hydrolysis of the high molecular weight dissolved organic matter fraction (HMWDOM; the fraction of DOM isolated after ultrafiltration). Sugars were identified by comparison of their mass spectra with those of chemically synthetized standards and with spectra previously described in the literature. Our results showed that mono- and di- methylated hexoses; mono- and di- methylated pentoses; mono- and di- methylated 6-deoxysugars, as well as heptoses, methylated heptoses, 3,6-dideoxysugars and 1,6 anhydrosugars (levoglucosan, mannosan, and galactosan) are components of HMWDOM, which may explain the low apparent yields of sugars recovered by molecular level (HPLC) analyses of HMWDOM after hydrolysis. From three depths spanning the surface (15 m) to bathypelagic (1800 m) ocean in the North Pacific near Hawaii our results showed that mono- and di- methylated hexoses were most abundant in the surface sample (64% of the total identified methylated sugarcompounds), while at 1800m monomethylated 6-deoxy sugars were the dominant sugars (42% of the total identified methylated sugar compounds). The high diversity of mono- and di- methylated hexoses in the surface sample most likely suggests an algal and/or bacterial source, while the high abundance of methylated 6-deoxy hexoses in the deep sample points toward an important bacterial contribution because the latter sugars are mostly found in bacterial lipopolysaccharides as well as highly degraded organic material.
    Beschreibung: Funding was provided by CNRS/INSU LEFE/Cyber grant (DORADE project), region Provence Alpes Côte d’Azur (MANDARINE project) and the Aix Marseille University (ORANGE project). D.J.R. received support from the National Science Foundation Center for Microbial Research and Education (CMORE) DBI 0424599 and the Gordon and Betty Moore Foundation.
    Schlagwort(e): High molecular weight dissolved organic matter (HMWDOM) ; Acyl polysaccharides (APS) ; Methylated sugars ; Heptoses ; Anhydrosugars ; 3,6 dideoxysugars ; Chemical synthesis of methylated sugars ; GC-MS
    Repository-Name: Woods Hole Open Access Server
    Materialart: Preprint
    Format: application/pdf
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 4
    facet.materialart.
    Unbekannt
    PANGAEA
    In:  Supplement to: Cuny, Philippe; Marty, Jean-Claude; Chiavérini, Jacques; Vescovali, Isabelle; Raphel, Danielle; Rontani, Jean-François (2002): One-year seasonal survey of the chlorophyll photodegradation process in the northwestern Mediterranean Sea. Deep Sea Research Part II: Topical Studies in Oceanography, 49(11), 1987-2005, https://doi.org/10.1016/S0967-0645(02)00023-1
    Publikationsdatum: 2024-02-01
    Beschreibung: Particulate samples from the water column were collected monthly from depths of 5-150 m, between May 1996 and March 1997, in the northwestern Mediterranean Sea (Ligurian Sea) as part of the DYFAMED project within the French JGOFS program. These samples were analyzed by gas chromatography-electron impact mass spectrometry for their phytol and 3-methylidene-3,7,11-trimethylhexadecan-1,2-diol (phytyldiol) content. The corresponding Chlorophyll Phytyl side chain Photodegradation Index, molar ratio of phytyldiol to phytol, was calculated and the mean amount of chlorophyll photodegraded within the euphotic zone estimated. Seasonal differences in the chlorophyll photodegradation process appear in the one-year study. The chlorophyll appeared more photodegraded in the surface water (generally more than 40% photodegraded at 5-10 m) than at the deep chlorophyll maximum (DCM) (40-50 m) observed in the summer stratified waters (about 20% photodegraded). This difference was attributed to the healthy state of the phytoplankton community (coincidence with the highest primary production levels) and to the lower intensity of irradiance at the DCM level. On the other hand, the bulk of the detrital chlorophyll (chlorophyll associated with phytodetritus, phaeopigments) undergoes photodegradation before it sinks out of the photic zone. However, in January (winter mixed water) the pigments exported towards the sea floor were less photodegraded. This is thought to result from a shorter period of residence of the pigments in the photic zone due to vertical convection and grazing activity of macrozooplankton (salps), which are producers of rapid sinking fecal pellets.
    Schlagwort(e): Biogeochemical Processes in the Oceans and Fluxes; CTD/Rosette; CTD-RO; DYF10; DYFAMED; DYFAMED_19990614; DYFAMED_D011096D; DYFAMED_D020397D; DYFAMED_D031296D; DYFAMED_D100796D; DYFAMED_D130197D; DYFAMED_D230297D; DYFAMED_D230596D; DYFAMED_D250896D; JGOFS; Joint Global Ocean Flux Study; MEDAR/MEDATLAS; Mediterranean Data Archaeology and Rescue; PROOF; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes; Time-series station; Trap; TRAP
    Materialart: Dataset
    Format: application/zip, 10 datasets
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 5
    Publikationsdatum: 2024-02-01
    Schlagwort(e): 3-Methylidene-7,11,15-trimethylhexadecan-1,2-diol; Biogeochemical Processes in the Oceans and Fluxes; Calculated; Chlorophyll phytyl side chain photo degradation index; CTD/Rosette; CTD-RO; DEPTH, water; DYFAMED; DYFAMED_D020397D; High Performance Liquid Chromatography (HPLC); JGOFS; Joint Global Ocean Flux Study; Phytol; PROOF; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes; Time-series station
    Materialart: Dataset
    Format: text/tab-separated-values, 12 data points
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 6
    Publikationsdatum: 2024-02-01
    Schlagwort(e): 3-Methylidene-7,11,15-trimethylhexadecan-1,2-diol; Biogeochemical Processes in the Oceans and Fluxes; Calculated; Chlorophyll phytyl side chain photo degradation index; CTD/Rosette; CTD-RO; DEPTH, water; DYFAMED; DYFAMED_D011096D; High Performance Liquid Chromatography (HPLC); JGOFS; Joint Global Ocean Flux Study; Phytol; PROOF; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes; Time-series station
    Materialart: Dataset
    Format: text/tab-separated-values, 12 data points
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 7
    Publikationsdatum: 2024-02-01
    Schlagwort(e): 3-Methylidene-7,11,15-trimethylhexadecan-1,2-diol; Biogeochemical Processes in the Oceans and Fluxes; Calculated; Chlorophyll phytyl side chain photo degradation index; CTD/Rosette; CTD-RO; DEPTH, water; DYFAMED; DYFAMED_D100796D; High Performance Liquid Chromatography (HPLC); JGOFS; Joint Global Ocean Flux Study; Phytol; PROOF; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes; Time-series station
    Materialart: Dataset
    Format: text/tab-separated-values, 12 data points
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 8
    Publikationsdatum: 2024-02-01
    Schlagwort(e): 3-Methylidene-7,11,15-trimethylhexadecan-1,2-diol; Biogeochemical Processes in the Oceans and Fluxes; Calculated; Chlorophyll phytyl side chain photo degradation index; CTD/Rosette; CTD-RO; DEPTH, water; DYFAMED; DYFAMED_D230596D; High Performance Liquid Chromatography (HPLC); JGOFS; Joint Global Ocean Flux Study; Phytol; PROOF; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes; Time-series station
    Materialart: Dataset
    Format: text/tab-separated-values, 12 data points
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 9
    Publikationsdatum: 2024-02-01
    Schlagwort(e): 3-Methylidene-7,11,15-trimethylhexadecan-1,2-diol; Biogeochemical Processes in the Oceans and Fluxes; Calculated; Chlorophyll phytyl side chain photo degradation index; DATE/TIME; Date/time end; DEPTH, water; DYF10; DYFAMED; High Performance Liquid Chromatography (HPLC); JGOFS; Joint Global Ocean Flux Study; MEDAR/MEDATLAS; Mediterranean Data Archaeology and Rescue; Phytol; PROOF; Time-series station; Trap; TRAP
    Materialart: Dataset
    Format: text/tab-separated-values, 8 data points
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 10
    Publikationsdatum: 2024-02-01
    Schlagwort(e): 3-Methylidene-7,11,15-trimethylhexadecan-1,2-diol; Biogeochemical Processes in the Oceans and Fluxes; Calculated; Chlorophyll phytyl side chain photo degradation index; CTD/Rosette; CTD-RO; DEPTH, water; DYFAMED; DYFAMED_19990614; High Performance Liquid Chromatography (HPLC); JGOFS; Joint Global Ocean Flux Study; Phytol; PROOF; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes; Time-series station
    Materialart: Dataset
    Format: text/tab-separated-values, 12 data points
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
Schließen ⊗
Diese Webseite nutzt Cookies und das Analyse-Tool Matomo. Weitere Informationen finden Sie hier...