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  • 1
    Online Resource
    Online Resource
    Milton :CRC Press LLC,
    Keywords: Population biology -- Mathematics. ; Bayesian field theory. ; Electronic books.
    Description / Table of Contents: Emphasizing model choice and model averaging, this book presents Bayesian methods for analyzing complex ecological data. Providing a basic introduction to Bayesian methods, the book includes detailed descriptions of methods that deal with covariate data and covers techniques at the forefront of research, such as model discrimination and model averaging. Leaders in the statistical ecology field, the authors apply the theory to a wide range of actual case studies and illustrate the methods using WinBUGS and R.
    Type of Medium: Online Resource
    Pages: 1 online resource (457 pages)
    Edition: 1st ed.
    ISBN: 9781439811887
    Series Statement: Chapman and Hall/CRC Interdisciplinary Statistics Series
    DDC: 577.8/801519542
    Language: English
    Note: Cover -- Title -- Copyright -- Contents -- Acknowledgments -- Preface -- PART I: Introduction to Statistical Analysis of Ecological Data -- CHAPTER 1: Introduction -- CHAPTER 2: Data, Models and Likelihood -- CHAPTER 3: Classical Inference Based on Likelihood -- PART II: Bayesian Techniques and Tools -- CHAPTER 4: Bayesian Inference -- CHAPTER 5: Markov Chain Monte Carlo -- CHAPTER 6: Model Discrimination -- CHAPTER 7: MCMC and RJMCMC Computer Programs -- PART III: Ecological Applications -- CHAPTER 8: Covariates, Missing Values and Random Effects -- CHAPTER 9: Multi-State Models -- CHAPTER 10: State-Space Modelling -- CHAPTER 11: Closed Populations -- Appendices -- APPENDIX A: Common Distributions -- APPENDIX B: Programming in R -- APPENDIX C: Programming in WinBUGS -- References -- Index.
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  • 2
    Publication Date: 2024-04-20
    Description: Modelled demographic parameters of North Atlantic humpback whales (Megaptera novaeangliae) visiting Bermuda are provided for every year from 2011 to 2010. The data set was constructed to determine abundance and abundance trends of humpback whales visiting Bermuda, a migratory stopover. Photographs of the ventral side of humpback whale tail flukes were taken during dedicated vessel-based surveys between December and May each year between 2010 and 2020, and were daily whenever possible (weather-permitting). Surveys followed a haphazard regime to maximize encounters with whales and focused spatially on the southwestern Bermuda Platform and the Challenger Bank seamount*. Surveys were conducted in closing mode; whales were approached and photographed on detection, and a focal follow was conducted at each encounter. Images of suitable quality were used for individual photo-identification via scarring patterns and coloration (Calambokidis et al., 2001). The resulting catalogue was used to construct annual sighting histories for each identifiable animal. Annual demographic parameters, including abundance, were reconstructed from sighting histories using capture-recapture (CR) methods. A Cormack-Jolly-Seber (CJS) model (Lebreton et al., 1992) was fit through maximum likelihood estimation to estimate annual apparent survival (Φ) and detection probability (p). The final model specification was informed by goodness-of-fit tests and AICc. To account for variable annual effort, p was linked to modified annual survey effort (based on number of survey days) via logistic regression (resulting in a different p value for each year). To account for transient animals that only visit the study area once, Φ was stratified into survival following the first sighting (Φ0) and survival following subsequent sightings (Φ1+). From the output of this CJS model, the following parameters were derived: annual rate of transience (T), number of transient animals (NT), number of non-transient animals (NR) and total abundance (Ntot). Ntot was calculated using a modified Horvitz-Thompson estimator (Horvitz and Thompson, 1952). T was calculated based on survival estimates and the observed number of newly sighted animals and re-sighted animals each year. NT and NR were calculated using T and Ntot. Confidence intervals (95%) for all parameters were derived using a stratified bootstrap approach (1000 replicates).
    Keywords: Abundance; Bermuda_humpback_whale_demographic_survey; Bermuda, Atlantic Ocean; cetacean; humpback whale; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Megaptera novaeangliae; Model; Time series
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 18.4 kBytes
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