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  • 1
    Publication Date: 2024-04-20
    Description: Modelled demographic parameters of North Atlantic humpback whales (Megaptera novaeangliae) visiting Bermuda are provided for every year from 2011 to 2010. The data set was constructed to determine abundance and abundance trends of humpback whales visiting Bermuda, a migratory stopover. Photographs of the ventral side of humpback whale tail flukes were taken during dedicated vessel-based surveys between December and May each year between 2010 and 2020, and were daily whenever possible (weather-permitting). Surveys followed a haphazard regime to maximize encounters with whales and focused spatially on the southwestern Bermuda Platform and the Challenger Bank seamount*. Surveys were conducted in closing mode; whales were approached and photographed on detection, and a focal follow was conducted at each encounter. Images of suitable quality were used for individual photo-identification via scarring patterns and coloration (Calambokidis et al., 2001). The resulting catalogue was used to construct annual sighting histories for each identifiable animal. Annual demographic parameters, including abundance, were reconstructed from sighting histories using capture-recapture (CR) methods. A Cormack-Jolly-Seber (CJS) model (Lebreton et al., 1992) was fit through maximum likelihood estimation to estimate annual apparent survival (Φ) and detection probability (p). The final model specification was informed by goodness-of-fit tests and AICc. To account for variable annual effort, p was linked to modified annual survey effort (based on number of survey days) via logistic regression (resulting in a different p value for each year). To account for transient animals that only visit the study area once, Φ was stratified into survival following the first sighting (Φ0) and survival following subsequent sightings (Φ1+). From the output of this CJS model, the following parameters were derived: annual rate of transience (T), number of transient animals (NT), number of non-transient animals (NR) and total abundance (Ntot). Ntot was calculated using a modified Horvitz-Thompson estimator (Horvitz and Thompson, 1952). T was calculated based on survival estimates and the observed number of newly sighted animals and re-sighted animals each year. NT and NR were calculated using T and Ntot. Confidence intervals (95%) for all parameters were derived using a stratified bootstrap approach (1000 replicates).
    Keywords: Abundance; Bermuda_humpback_whale_demographic_survey; Bermuda, Atlantic Ocean; cetacean; humpback whale; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Megaptera novaeangliae; Model; Time series
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 18.4 kBytes
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  • 2
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] The metabolic state of skeletal muscle and brain within intact rats is monitored using high resolution phosphorus nuclear magnetic resonance. Regional disturbances in metabolism (for example, localised ischaemia) are easily observed, indicating the diagnostic possibilities of the method. ...
    Type of Medium: Electronic Resource
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  • 3
    Publication Date: 2017-01-05
    Description: Blood transfusion during radical chemo-radiotherapy does not reduce tumour hypoxia in squamous cell cancer of the head and neck British Journal of Cancer 116, 28 (3 January 2017). doi:10.1038/bjc.2016.386 Authors: Liam Welsh, Rafal Panek, Angela Riddell, Kee Wong, Martin O Leach, Mahvash Tavassoli, Durdana Rahman, Maria Schmidt, Tara Hurley, Lorna Grove, Thomas Richards, Dow-Mu Koh, Christopher Nutting, Kevin Harrington, Kate Newbold & Shreerang Bhide
    Keywords: head and neck canceranaemiaMRIblood transfusionradiotherapy
    Print ISSN: 0007-0920
    Electronic ISSN: 1532-1827
    Topics: Medicine
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  • 4
    Publication Date: 2014-09-20
    Description: Background: DNA methylation is a widely studied epigenetic phenomenon; alterations in methylation patterns influence human phenotypes and risk of disease. As part of the Atherosclerosis Risk in Communities (ARIC) study, the Illumina Infinium HumanMethylation450 (HM450) BeadChip was used to measure DNA methylation in peripheral blood obtained from ~3000 African American study participants. Over 480,000 cytosine-guanine (CpG) dinucleotide sites were surveyed on the HM450 BeadChip. To evaluate the impact of technical variation, 265 technical replicates from 130 participants were included in the study. Results: For each CpG site, we calculated the intraclass correlation coefficient (ICC) to compare variation of methylation levels within- and between-replicate pairs, ranging between 0 and 1. We modeled the distribution of ICC as a mixture of censored or truncated normal and normal distributions using an EM algorithm. The CpG sites were clustered into low- and high-reliability groups, according to the calculated posterior probabilities. We also demonstrated the performance of this clustering when applied to a study of association between methylation levels and smoking status of individuals. For the CpG sites showing genome-wide significant association with smoking status, most (~96%) were seen from sites in the high reliability cluster. Conclusions: We suggest that CpG sites with low ICC may be excluded from subsequent association analyses, or extra caution needs to be taken for associations at such sites.
    Electronic ISSN: 1471-2105
    Topics: Biology , Computer Science
    Published by BioMed Central
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