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  • 1
    Publication Date: 2023-12-15
    Keywords: 15N-tracer; 15N tracer incubations, calulated (Trimmer et al. 2016); 15N tracer incubations (Wenk et al. 2013); Ammonium-15, production; Ammonium-15, production, standard error; anoxia; Calculated; chemodenitrification; DATE/TIME; Denitrification; DEPTH, water; Experimental treatment; ferruginous; IRMS, hypobromite method (Robertson et al. 2016); Lake_LaCruz; Measurement conducted; meromixis; MULT; Multiple investigations; N2O production rates; N2O site preference; nitrification; nitrifier denitrification; Nitrite, production; Nitrite, production, standard error; Nitrogen-15, tracer; Nitrogen-15, tracer, fraction; Nitrogen-15, tracer, reduction; Nitrogen-15, tracer, reduction, standard error; Nitrogen gas, 29N2, production; Nitrogen gas, 29N2, production, standard error; Nitrogen gas, 30N2, production; Nitrogen gas, 30N2, production, standard error; nitrogen isotopes; nitrous oxide; Nitrous oxide, production; Nitrous oxide, production, standard error; Nitrous oxide/Nitrogen-15 tracer reduction ratio; Oxic condition; oxycline; Photometrical detection, Griess reagent method (Hansen and Koroleff 1999); Spain; Various methods; water column
    Type: Dataset
    Format: text/tab-separated-values, 303 data points
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  • 2
    Publication Date: 2023-12-15
    Keywords: 15N-tracer; Ammonium; Ammonium/δ15N ratio; anoxia; Calculated according to Weiss and Price (1980); Chemiluminescence detection of NO, Vanadium(III) method (Braman and Hendrix 1989); chemodenitrification; DATE/TIME; Denitrification; DEPTH, water; ferruginous; Gas chromatography - Isotope ratio mass spectrometer (GC-IRMS); GC-IRMS, denitrifier method (Sigman et al. 2001); GC-IRMS, hypobromite method (Zhang et al. 2007); HPLC, Fluorescence detection, monobromobimane method (Fahey and Newton 1987); Hydrogen sulfide; ICP-MS, Spectro Ciros Vision (2015), ICP-OES, Agilent Technologies (2017); Ion chromatography (940 Professional IC Vario, Metrohm); Iron, dissolved; Iron, particulate; Lake_LaCruz; meromixis; MULT; Multiparameter probe; Multiple investigations; N2O production rates; N2O site preference; Nitrate; Nitrate/δ15N ratio; Nitrate/δ18O ratio; nitrification; nitrifier denitrification; Nitrite; nitrogen isotopes; Nitrogen oxide (nitrate + nitrite)/δ15N ratio; nitrous oxide; Nitrous oxide, dissolved; Nitrous oxide, dissolved, equilibrium; Nitrous oxide/δ15N ratio; Nitrous oxide/δ18O ratio; oxycline; Photometrical detection, Griess reagent method (Hansen and Koroleff 1999); Photometrical detection, Phenol method (Hansen and Koroleff 1999); Site preference, N2O; Spain; Sulfate; water column
    Type: Dataset
    Format: text/tab-separated-values, 581 data points
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  • 3
    Publication Date: 2023-12-15
    Keywords: 15N-tracer; anoxia; chemodenitrification; Chlorophyll a; Conductivity, electrical; DATE/TIME; Denitrification; DEPTH, water; ECO-FL, Wetlands, EX/EM= 470/695; ferruginous; Hydrogen sulfide; Lake_LaCruz; meromixis; Micro-optode PSt1 (Kirf et al. 2014); Micro-optode TOS7 (Kirf et al. 2014); MULT; Multiple investigations; N2O production rates; N2O site preference; nitrification; nitrifier denitrification; nitrogen isotopes; nitrous oxide; oxycline; Oxygen; PAR sensor LI-193 (Spherical Underwater Quantum Sensor) Li-COR Inc.; pH; Profiling in situ analyzer, multi-parameter-probe; Radiation, photosynthetically active; Salinity; Spain; Temperature, water; Turbidity (Nephelometric turbidity unit); water column
    Type: Dataset
    Format: text/tab-separated-values, 51581 data points
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  • 4
    Publication Date: 2024-02-12
    Keywords: 15N-tracer; anoxia; chemodenitrification; DATE/TIME; Denitrification; DEPTH, water; Duration; ferruginous; Gas chromatography - Isotope ratio mass spectrometer (GC-IRMS); GC-IRMS, azide method (McIlvin and Altabet 2005); Iron II, dissolved; Lake_LaCruz; meromixis; MULT; Multiple investigations; N2O production rates; N2O site preference; nitrification; nitrifier denitrification; Nitrite; Nitrite/δ15N ratio; Nitrite/δ18O ratio; nitrogen isotopes; nitrous oxide; Nitrous oxide; Nitrous oxide/δ15N ratio; Nitrous oxide/δ18O ratio; oxycline; Photometrical detection, Ferrozine method; Photometrical detection, Griess reagent method (Hansen and Koroleff 1999); Site preference, N2O; Spain; water column
    Type: Dataset
    Format: text/tab-separated-values, 179 data points
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  • 5
    Publication Date: 2024-02-12
    Description: We investigated the microbial and abiotic N2O cycle in the water column of iron-rich, meromictic Lake La Cruz, Spain, during two sampling campaigns in March 2015 and March 2017. At the deepest point of the lake, we used a profiling in situ analyzer equipped with several probes and optodes to detect physicochemical parameters. In addition, we collected water column samples via an in situ pump in order to analyze concentrations of N, S, and Fe species as well as isotope characteristics of several N species. In 2017, we used a Niskin bottle to take water samples from 8.0 and 14.5 m depth for two types of incubation experiments. In the first set of experiments, we added 15N-labeled substrates, and in some incubations Fe2+, to filtered and unfiltered lake water, and analyzed the produced N2O, N2, and NH4+. In the other experiment, we determined the N and O isotope effects of NO2- and N2O during chemodenitrification (reaction of NO2- and Fe2+) in anoxic and sterile lake water from 14.5 m depth.
    Keywords: 15N-tracer; anoxia; chemodenitrification; Denitrification; ferruginous; Lake_LaCruz; meromixis; MULT; Multiple investigations; N2O production rates; N2O site preference; nitrification; nitrifier denitrification; nitrogen isotopes; nitrous oxide; oxycline; Spain; water column
    Type: Dataset
    Format: application/zip, 4 datasets
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  • 6
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2011
    Description: Atmospheric nitrous oxide N2O concentrations have been rising steadily for the past century as a result of human activities. In particular, human perturbation of the nitrogen cycle has increased the N2O production rates of the two major sources of this greenhouse gas, soil and the ocean. Nitrification, and particularly ammonia oxidation, is one of the major processes that produces N2O in the ocean. In this thesis, a series of stable isotopic methods have been used to characterize the biogeochemical controls on N2O production by marine nitrification as well as the natural abundance stable isotopic signatures of N2O produced by marine nitrifiers. This thesis shows that in addition to chemical controls on N2O production rates such as oxygen (O2) and nitrite (NO-2) concentrations, there are also biological controls such as nitrifier cell abundances and coastal phytoplankton blooms that may influence N2O production by ammonia oxidizers as well. Ammonia oxidizers can produce N2O through two separate biochemical mechanisms that have unique isotopic signatures. Using culture- based measurements of these signatures, we conclude that one of these pathways, nitrifier- denitrification, may be a significant source of N2O produced in the South Atlantic Ocean and possibly the global ocean.
    Description: Funding for this work was provided by NSF/OCE 05-26277, the Andrew W. Mellon Founda- tion Awards for Innovative Research, the Cecil H. and Ida M. Green Technology Innovation Awards, and the W. M. Keck Foundation.
    Keywords: Nitrification ; Biogeochemistry ; Knorr (Ship : 1970-) Cruise KN192-05
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
    Format: application/pdf
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  • 7
    Publication Date: 2022-05-25
    Description: Author Posting. © Association for the Sciences of Limnology and Oceanography, 2012. This article is posted here by permission of Association for the Sciences of Limnology and Oceanography for personal use, not for redistribution. The definitive version was published in Limnology and Oceanography 57 (2012): 989-1010, doi:10.4319/lo.2012.57.4.0989.
    Description: We present full-depth zonal sections of total dissolved cobalt, iron, manganese, and labile cobalt from the South Atlantic Ocean. A basin-scale plume from the African coast appeared to be a major source of dissolved metals to this region, with high cobalt concentrations in the oxygen minimum zone of the Angola Dome and extending 2500 km into the subtropical gyre. Metal concentrations were elevated along the coastal shelf, likely due to reductive dissolution and resuspension of particulate matter. Linear relationships between cobalt, N2O, and O2, as well as low surface aluminum supported a coastal rather than atmospheric cobalt source. Lateral advection coupled with upwelling, biological uptake, and remineralization delivered these metals to the basin, as evident in two zonal transects with distinct physical processes that exhibited different metal distributions. Scavenging rates within the coastal plume differed for the three metals; iron was removed fastest, manganese removal was 2.5 times slower, and cobalt scavenging could not be discerned from water mass mixing. Because scavenging, biological utilization, and export constantly deplete the oceanic inventories of these three hybrid-type metals, point sources of the scale observed here likely serve as vital drivers of their oceanic cycles. Manganese concentrations were elevated in surface waters across the basin, likely due to coupled redox processes acting to concentrate the dissolved species there. These observations of basin-scale hybrid metal plumes combined with the recent projections of expanding oxygen minimum zones suggest a potential mechanism for effects on ocean primary production and nitrogen fixation via increases in trace metal source inputs.
    Description: This research was supported US National Science Foundation Chemical Oceanography (Division of Ocean Sciences OCE-0452883, OCE-0752291, OCE-0928414, OCE-1031271), the Center for Microbial Research and Education, the Gordon and Betty Moore Foundation, the WHOI Coastal Ocean Institute, and the WHOI Ocean Life Institute.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 8
    Publication Date: 2020-02-06
    Description: Ammonia-oxidizing microorganisms are an important source of the greenhouse gas nitrous oxide (N2O) in aquatic environments. Identifying the impact of pH on N2O production by ammonia oxidizers is key to understanding how aquatic greenhouse gas fluxes will respond to naturally occurring pH changes, as well as acidification driven by anthropogenic CO2. We assessed N2O production rates and formation mechanisms by communities of ammonia-oxidizing bacteria (AOB) and archaea (AOA) in a lake and a marine environment, using incubation-based nitrogen (N) stable isotope tracer methods with 15N-labeled ammonium (15NH4+) and nitrite (15NO2-), and also measurements of the natural abundance N and O isotopic composition of dissolved N2O. N2O production during incubations of water from the shallow hypolimnion of Lake Lugano (Switzerland) was significantly higher when the pH was reduced from 7.54 (untreated pH) to 7.20 (reduced pH), while ammonia oxidation rates were similar between treatments. In all incubations, added NH4+ was the source of most of the N incorporated into N2O, suggesting that the main N2O production pathway involved hydroxylamine (NH2OH) and/or NO2- produced by ammonia oxidation during the incubation period. A small but significant amount of N derived from exogenous/added 15NO2- was also incorporated into N2O, but only during the reduced-pH incubations. Mass spectra of this N2O revealed that NH4+ and 15NO2- each contributed N equally to N2O by a "hybrid-N2O" mechanism consistent with a reaction between NH2OH and NO2-, or compounds derived from these two molecules. Nitrifier denitrification was not an important source of N2O. Isotopomeric N2O analyses in Lake Lugano were consistent with incubation results, as 15N enrichment of the internal N vs. external N atoms produced site preferences (25.0-34.4%) consistent with NH2OH-dependent hybrid-N2O production. Hybrid-N2O formation was also observed during incubations of seawater from coastal Namibia with 15NH4+ and NO2-. However, the site preference of dissolved N2O here was low (4.9%), indicating that another mechanism, not captured during the incubations, was important. Multiplex sequencing of 16S rRNA revealed distinct ammonia oxidizer communities: AOB dominated numerically in Lake Lugano, and AOA dominated in the seawater. Potential for hybrid N2O formation exists among both communities, and at least in AOB-dominated environments, acidification may accelerate this mechanism.
    Type: Article , PeerReviewed
    Format: text
    Format: text
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