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  • 1
    Online Resource
    Online Resource
    Oxford :Oxford University Press, Incorporated,
    Keywords: Information theory-Statistical methods. ; Electronic books.
    Description / Table of Contents: Advances in Info-Metrics expands the study of info-metrics - a framework for modeling, reasoning, and drawing inferences under conditions of insufficient information - across disciplines. This volume explores the mathematical and philosophical foundations of information-theoretic inference and demonstrates how to solve problems using new cross-disciplinary case studies and examples.
    Type of Medium: Online Resource
    Pages: 1 online resource (557 pages)
    Edition: 1st ed.
    ISBN: 9780190636715
    DDC: 003.54
    Language: English
    Note: Cover -- Advances in Info-Metrics: Information and Information Processing across Disciplines -- Copyright -- Contents -- Preface -- The Info-Metrics Institute -- Acknowledgments -- Contributor List -- PART I: INFORMATION, MEANING, AND VALUE -- 1: Information and Its Value -- 1. Background and Basic Questions -- 2. Information -- 2.1 Definition and Types -- 2.2 Processing, Manipulating, and Converting to Knowledge -- 2.3 Observer and Receiver -- 3. The Value of Information -- 3.1 Utility and Value -- 3.2 Prices and Value -- 3.3 Hedonic Values: The Factors that Determine the Value -- 3.4 Digital Information and Value -- 3.5 Absolute versus Relative Value -- 3.6 Prices, Quantities, Probabilities, and Value -- 3.7 A Comment on Ethics versus Value -- 4. Risk, Decisions, Prices, and Value -- 5. The Value of Disinformation -- 6. Concluding Thoughts -- Acknowledgments -- References -- 2: A Computational Theory of Meaning -- 1. Introduction -- 1.1 Chapter Overview -- 1.2 Learning, Data Compression, and Model Selection -- 1.3 Some Examples -- 2. From Computation to Models -- 2.1 Two-Part Code Optimization -- 2.2 Reasons to Doubt the Validity of Two-Part Code Optimization -- 2.3 There Are Many Different Models That Could Be Selected as Optimal by Two-Part Code Optimization -- 2.4 Two-Part Code Optimization Selects Models That Have no Useful Stochastic Interpretation -- 2.5 Empirical Justification for Two-Part Code Optimization -- 3. Meaning as Computation -- 4. From a Single Computing Agent to Communitiesof Interactive Learning Agents -- 4.1 Semantics for Turing Machines -- 4.2 Descriptions of Turing Machines -- 4.3 Names for Turing Machines -- 4.4 Turing Frames -- 4.5 Variance of Turing Frames -- 4.6 Meaningful Information -- 4.7 Types of Agents -- 5. Discussion -- Acknowledgments -- References -- PART II: INFORMATION THEORY AND BEHAVIOR. , 3: Inferring the Logic of Collective Information Processors -- 1. Introduction -- 2. First Task: Infer Individual-to-Aggregate Mapping -- 2.1 Inference Challenge 1: An Abundance of Potentially Relevant Detail-Solved by Large-Scale Reverse Engineering -- 2.2 Inference Challenge 2: Structural Uncertainty Due to Limited Data-Solved by Hierarchical Model Selection and Regularization -- 2.2.1 Maximum Entropy Modeling -- 2.2.2 Dynamical Inference -- 2.3 Inference Challenge 3: Parameter Uncertainty Due to Scale Separation and Sloppiness-Solved by Bayes and not Focusingon on Individual Parameters Individual Parameters -- 3. Second Task: Find Abstract System Logic -- 3.0.1 Why Do We Want to Do This? Advantages of Coarse-Grained, Dimensionality-Reduced Description -- 3.0.2 Do We Expect to Be Able to Compress? What Does "Logic" Look Like? -- 3.1 Logic Approach 1: Emergent Grouped Logic Processors: Clustering, Modularity, Sparse Coding, and Motifs -- 3.2 Logic Approach 2: Instability, Bifurcations, and Criticality -- 3.2.1 Fisher Information and Criticality -- 3.2.2 Dynamical Systems and Bifurcations -- 3.3 Logic Approach 3: Explicit Model Reduction -- 4. The Future of the Science of Living Systems -- Acknowledgments -- References -- 4: Information-Theoretic Perspective on Human Ability -- 1. Introduction -- 2. Information-Theoretic Perspective on Human Ability -- 2.1 The Maximum Entropy Principle and Information Capacity -- 2.1.1 Neoclassical Models and Bounded Rationality -- 2.1.2 Information Acquisition -- 2.1.3 Information Processing -- 2.1.4 Discerning Incorrect Information -- 2.2 Rational Inattention Theory and Extensions -- 2.3 Information Capacity and the Big Five Personality Traits -- 3. An Empirical Study on Information Capacity -- 3.1 Data -- 3.2 Information Acquisition and Processing -- 3.3 Accumulation of Wealth and the Big Five Personality Traits. , 4. Conclusion -- Acknowledgments -- References -- 5: Information Recovery Related to Adaptive Economic Behavior and Choice -- 1. Introduction -- 2. Causal Entropy Maximization -- 3. An Information Recovery Framework -- 3.1 Examples of Two Information-Theoretic Behavioral Models -- 3.2 Convex Entropic Divergences -- 4. Further Examples-Applications -- 4.1 A Stochastic State-Space Framework -- 4.2 Network Behavior Recovery -- 4.3 Unlocking the Dynamic Content of Time Series -- 5. Summary Comments -- References -- PART III: INFO-METRICS AND THEORYCONSTRUCTION -- 6: Maximum Entropy: A Foundation for a Unified Theory of Ecology -- 1. Introduction -- 2. Ecological Theory -- 2.1 The Ecologist's Dilemma -- 2.2 Nonmechanistic Ecological Theory -- 2.3 The Logic of Inference -- 3. The Maximum Entropy Theory of Ecology: Basics and a Simple Model Realization -- 4. Failures of the Static ASNE Model of METE -- 4.1 Energy Equivalence -- 4.2 METE Fails in Rapidly Changing Systems -- 5. Hybrid Vigor in Ecological Theory -- 5.1 DynaMETE: A Natural Extension of the Static Theory -- 6. The Ultimate Goal -- Appendix Some Epistemological Considerations -- References -- 7: Entropic Dynamics: Mechanics without Mechanism -- 1. Introduction -- 2. The Statistical Model -- 2.1 Choosing the Prior -- 2.2 The Constraints -- 3. Entropic Time -- 3.1 Time as an Ordered Sequence of Instants -- 3.2 The Arrow of Entropic Time -- 3.3 Duration: A Convenient Time Scale -- 4. The Information Metric of Configuration Space -- 5. Diffusive Dynamics -- 6. Hamiltonian Dynamics -- 6.1 The Ensemble Hamiltonian -- 6.2 The Action -- 7. Information Geometry and the Quantum Potential -- 8. The Schrödinger Equation -- 9. Some Final Comments -- 9.1 Is ED Equivalent to Quantum Mechanics? -- 9.2 Is ED a Hidden-Variable Model? -- 9.3 On Interpretation -- Acknowledgments -- References. , PART IV: INFO-METRICS IN ACTION I: PREDICTION AND FORECASTS -- 8: Toward Deciphering of Cancer Imbalances: Using Information-Theoretic Surprisal Analysis for Understanding of Cancer Systems -- 1. Background -- 2. Information-Theoretic Approaches in Biology -- 3. Theory of Surprisal Analysis -- 4. Using Surprisal Analysis to Understand Intertumor Heterogeneity -- 4.1 A Thermodynamic-Based Interpretation of Protein Expression Heterogeneity in Glioblastoma Multiforme Tumors Identifies Tumor-Specific Unbalanced Processes -- 5. Toward Understanding Intratumor Heterogeneity -- 6. Using Surprisal Analysis to Predict a Direction of Change in Biological Processes -- 7. Summary -- References -- 9: Forecasting Socioeconomic Distributions on Small-Area Spatial Domains for Count Data -- 1. Introduction -- 2. Spatial Perspectives for Areal Data -- 2.1 Spatial Dependence -- 2.2 Spatial Heterogeneity -- 2.3 The Role of the Map -- 3. Spatial Models for Count Data -- 4. Information-Theoretic Methods for Spatial Count Data Models: GCE Area Level Estimators -- 5. Simulation Experiments -- 5.1 Scenario 1: GCE in a Spatial Homogeneous Process -- 5.2 Scenario 2: GCE in a Spatial Heterogeneous Process -- 5.3 Scenario 3: GCE in a Process of Spatial Dependence -- 6. An Empirical Application: Estimating Unemployment Levels of Immigrants at Municipal Scale in Madrid, 2011 -- 7. Conclusions -- References -- 10: Performance and Risk Aversion of Funds with Benchmarks: A Large Deviations Approach -- 1. Introduction -- 2. An Index of Outperformance Probability -- 2.1 Entropic Interpretation -- 2.2 Time-Varying Gaussian Log Returns -- 2.3 Familiar Performance Measures as Approximations -- 3. Nonparametric Estimation of the Performance Measure -- 3.1 Empirical Results -- 3.1.1 Fund Performance -- 4. Outperformance Probability Maximization as a Fund Manager Behavioral Hypothesis. , 4.1 Scientific Principles for Evaluating Managerial Behavioral Hypotheses -- 5. Conclusions -- Acknowledgments -- References -- 11: Estimating Macroeconomic Uncertainty and Discord: Using Info-Metrics -- 1. Introduction -- 2. The Data -- 3. Aggregate Uncertainty, Aggregate Variance and Their Components -- 3.1 Fitting Continuous Distributions to Histogram Forecasts -- 3.2 Uncertainty Decomposition-Decomposing Aggregate Variance -- 3.3 Estimation of Variance -- 3.4 Correcting for Bin Size for Variance Decomposition -- 3.5 Variance Decomposition Results -- 4. Uncertainty and Information Measures -- 5. Time Series of Uncertainty Measures -- 6. Information Measure and "News" -- 7. Impact of Real Output Uncertainty on Macroeconomic Variables -- 8. Summary and Conclusions -- References -- 12: Reduced Perplexity: A Simplified Perspective on Assessing Probabilistic Forecasts -- 1. Introduction -- 2. Probability, Perplexity, and Entropy -- 3. Relationship between the Generalized Entropy and the Generalized Mean -- 4. Assessing Probabilistic Forecasts Using a Risk Profile -- 5. Discussion and Conclusion -- Appendix: Modeling Risk as a Coupling of Statistical States -- Acknowledgments -- References -- PART V: INFO-METRICS IN ACTION II: STATISTICAL AND ECONOMETRICS INFERENCE -- 13: Info-metric Methods for the Estimation of Models with Group-Specific Moment Conditions -- 1. Introduction -- 2. GMM and IM/GEL -- 3. The Pseudo-Panel Data Approach to Estimation Based on Repeated Cross-Sectional Data -- 4. IM Estimation with Group-Specific Moment Conditions -- 5. Statistical Properties and Inference -- 5.1 Simulation Study -- 5.2 Empirical Example -- 6. Concluding Remarks -- References -- 14: Generalized Empirical Likelihood-Based Kernel Estimation of Spatially Similar Densities -- 1. Introduction -- 2. Weighted Kernel Density Estimation. , 3. Spatially Smoothed Moment Constraints.
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  • 2
    Type of Medium: Book
    Series Statement: ICES council meeting papers 1983(30)
    Language: Undetermined
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  • 3
    Publication Date: 2021-06-26
    Description: A competitive enzyme-linked immunosorbent assay (cELISA) was developed by using a whole-cell antigen from a marine Brucella sp. isolated from a harbor seal (Phoca vitulina). The assay was designed to screen sera from multiple marine mammal species for the presence of antibodies against marine-origin Brucella. Based on comparisons with culture-confirmed cases, specificity and sensitivity for cetacean samples tested were 73% and 100%, respectively. For pinniped samples, specificity and sensitivity values were 77% and 67%, respectively. Hawaiian monk seal (Monachus schauinslandi; n = 28) and bottlenose dolphin (Tursiops truncatus; n = 48) serum samples were tested, and the results were compared with several other assays designed to detect Brucella abortus antibodies. The comparison testing revealed the marine-origin cELISA to be more sensitive than the B. abortus tests by the detection of additional positive serum samples. The newly developed cELISA is an effective serologic method for detection of the presence of antibodies against marine-origin Brucella sp. in marine mammals.
    Keywords: Chemistry ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 856-862
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  • 4
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 5
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    In:  http://aquaticcommons.org/id/eprint/9753 | 403 | 2012-08-16 13:26:39 | 9753 | United States National Marine Fisheries Service
    Publication Date: 2021-07-09
    Description: William Francis Thompson (1888–1965), as a temporary employee of the British Columbia Provincial Fisheries Department, was assigned in 1914 to under-take full-time studies of the Pacific halibut, Hippoglossus stenolepis. The fishery was showing signs of depletion, so Thompson undertook the inquiry into this resource, the first intensive study on the Pacific halibut. Three years later, Thompson, working alone, had provided a basic foundation of knowledge for the subsequent management of this resource. He published seven land-mark papers on this species, and this work marked the first phase of a career in fisheries science that was to last nearly 50 years.
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 5-14
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  • 6
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    In:  http://aquaticcommons.org/id/eprint/9754 | 403 | 2012-08-16 14:34:48 | 9754 | United States National Marine Fisheries Service
    Publication Date: 2021-07-09
    Description: William Francis Thompson (1888–1965), an early fishery biologist, joined the California Fish and Game Commission in 1917 with a mandate to investigate the marine fisheries of the state. He initiated studies on the albacore tuna, Thunnus alalunga, and the Pacific sardine, Sardinops sagax, as well as studies on other economically important marine organisms. Thompson built up a staff of fishery scientists, many of whom later attained considerable renown in their field, and he helped develop, and then direct, the commission’s first marine fisheries laboratory. During his tenure in California, he developed a personal philosophy of research that he outlined in several publications. Thompson based his approach on the yield-based analysis of the fisheries as opposed to large-scale environmental studies. He left the state agency in 1925 to direct the newly formed International Fisheries Commission (now the International Pacific Halibut Commission). William Thompson became a major figure in fisheries research in the United States, and particularly in the Pacific Northwest and Alaska, during the first half of the 20th cent
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 15-24
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  • 7
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    In:  http://aquaticcommons.org/id/eprint/9830 | 403 | 2012-08-16 14:23:03 | 9830 | United States National Marine Fisheries Service
    Publication Date: 2021-06-25
    Description: Charles Henry Gilbert (Fig. 1) was a pioneer ichthyologist and, later, fishery biologist of particular significance to natural history of the western United States. Born in Rockford, Illinois on 5 December 1859, he spent his early years in Indianapolis, Indiana, where, in 1874, he came under the influence of his high school teacher, David Starr Jordan (1851-1931). Gilbert graduated from high school in 1875, and when Jordan became a professor of natural history at Butler University in Irvington, Indiana, Gilbert followed, and received his B.A. degree in 1879. Jordan moved to Indiana University, in Bloomington, in the fall of 1879, and Gilbert again followed, earning his M.S. degree in 1882 and his Ph.D. in 1883 in zoology. His doctorate was the first ever awarded by Indiana University.
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 1-2
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  • 8
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    In:  http://aquaticcommons.org/id/eprint/9832 | 403 | 2012-08-16 14:22:39 | 9832 | United States National Marine Fisheries Service
    Publication Date: 2021-06-25
    Description: Fishery science pioneers often faced challenges in their field work that are mostly unknown to modern biologists. Some of the travails faced by ichthyologist and, later, fishery biologist Charles Henry Gilbert (1859-1928) during his service as Naturalist-in-Charge of the North Pacific cruise ofthe U.S. Bureau of Fisheries Steamer Albatross in 1906, are described here, as are accomplishments of the cruise. The vessel left San Francisco, Calif., on 3 May 1906, just after the great San Francisco earthquake, for scientific exploration of waters of the Aleutian islands, Bering Sea, Kamchatka, Sakhalin, and Japan, returning to San Francisco in December. Because the expedition occurred just after the war between Japan and Russia of 1904-05 floating derelict mines in Japanese waters were often a menace. Major storms caused havoc in the region, and the captain of the Albatross, Lieutenant Commander LeRoy Mason Garrett (1857-1906), U.S.N., was lost at sea, apparently thrown from the vessel during a sudden storm on the return leg of the cruise. Despite such obstacles, Gilbert and the Albatross successfully completed their assigned chores. They occupied 339 dredging and 48 hydrographic stations, and discovered over 180 new species of fishes and many new species of invertebrates. The expedition's extensive biological collections spawned over 30 descriptive publications, some of which remain today as standards of knowledge.
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 17-28
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  • 9
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    In:  http://aquaticcommons.org/id/eprint/9759 | 403 | 2012-08-16 14:34:35 | 9759 | United States National Marine Fisheries Service
    Publication Date: 2021-07-09
    Description: William Francis Thompson (1888–1965), as a temporary employee of the British Columbia Provincial Fisheries Department, was assigned in 1914 to under-take full-time studies of the Pacific halibut, Hippoglossus stenolepis. The fishery was showing signs of depletion, so Thompson undertook the inquiry into this resource, the first intensive study on the Pacific halibut. Three years later, Thompson, working alone, had provided a basic foundation of knowledge for the subsequent management of this resource. He published seven land-mark papers on this species, and this work marked the first phase of a career in fisheries science that was to last nearly 50 years.
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 5-14
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  • 10
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    In:  http://aquaticcommons.org/id/eprint/9831 | 403 | 2012-08-16 14:22:46 | 9831 | United States National Marine Fisheries Service
    Publication Date: 2021-06-25
    Description: Charles Henry Gilbert (1859-1928) was a pioneering ichthyologist who made major contributions to the study of fishes of the American West. As chairman of the Department ofZoology at Leland Stanford Junior University in Palo Alto, Calif., during 1891-1925, Gilbert was extremely devoted to his work and showed little patience with those ofa different mindset. While serving as Naturalist-in-Charge of the U.S. Fish Commission Steamer Albatross during her exploratory expedition to the Hawaiian Islands in 1902, Gilbert engaged in an acrimonious feud with the ship's captain, Chauncey Thomas, Jr. (1850-1919), U.S.N., over what Gilbert perceived to be an inadequate effort by the captain. This essay focuses on the conflict between two strong figures, each operatingf rom different world views, and each vying for authority. Despite the difficulties these two men faced, the voyage of the Albatross in 1902 must be considered a success, as reflected by the extensive biological samples collected, the many new species of animals discovered, and the resulting publication of important scientific papers.
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 3-16
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