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  • 1
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    Deep North Atlantic last glacial maximum salinity reconstruction (2021)
    American Geophysical Union
    Details
    Publication Date: 2022-10-19
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography and Paleoclimatology 36(7), (2021): e2020PA004088, https://doi.org/10.1029/2020PA004088.
    Description: We reconstruct deep water-mass salinities and spatial distributions in the western North Atlantic during the Last Glacial Maximum (LGM, 19–26 ka), a period when atmospheric CO2 was significantly lower than it is today. A reversal in the LGM Atlantic meridional bottom water salinity gradient has been hypothesized for several LGM water-mass reconstructions. Such a reversal has the potential to influence climate, ocean circulation, and atmospheric CO2 by increasing the thermal energy and carbon storage capacity of the deep ocean. To test this hypothesis, we reconstructed LGM bottom water salinity based on sedimentary porewater chloride profiles in a north-south transect of piston cores collected from the deep western North Atlantic. LGM bottom water salinity in the deep western North Atlantic determined by the density-based method is 3.41–3.99 ± 0.15% higher than modern values at these sites. This increase is consistent with: (a) the 3.6% global average salinity change expected from eustatic sea level rise, (b) a northward expansion of southern sourced deep water, (c) shoaling of northern sourced deep water, and (d) a reversal of the Atlantic's north-south deep water salinity gradient during the LGM.
    Description: This work was supported by the US National Science Foundation (grant numbers 1433150 and 1537485).
    Description: 2021-10-24
    Keywords: Carbon cycle ; Climate change ; Deep water ; Glaciation ; Meridional overturning circulation ; Paleosalinity ; Porewater
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
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    The contribution of water radiolysis to marine sedimentary life (2021)
    Nature Research
    Details
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sauvage, J. F., Flinders, A., Spivack, A. J., Pockalny, R., Dunlea, A. G., Anderson, C. H., Smith, D. C., Murray, R. W., & D'Hondt, S. The contribution of water radiolysis to marine sedimentary life. Nature Communications, 12(1), (2021): 1297, https://doi.org/10.1038/s41467-021-21218-z.
    Description: Water radiolysis continuously produces H2 and oxidized chemicals in wet sediment and rock. Radiolytic H2 has been identified as the primary electron donor (food) for microorganisms in continental aquifers kilometers below Earth’s surface. Radiolytic products may also be significant for sustaining life in subseafloor sediment and subsurface environments of other planets. However, the extent to which most subsurface ecosystems rely on radiolytic products has been poorly constrained, due to incomplete understanding of radiolytic chemical yields in natural environments. Here we show that all common marine sediment types catalyse radiolytic H2 production, amplifying yields by up to 27X relative to pure water. In electron equivalents, the global rate of radiolytic H2 production in marine sediment appears to be 1-2% of the global organic flux to the seafloor. However, most organic matter is consumed at or near the seafloor, whereas radiolytic H2 is produced at all sediment depths. Comparison of radiolytic H2 consumption rates to organic oxidation rates suggests that water radiolysis is the principal source of biologically accessible energy for microbial communities in marine sediment older than a few million years. Where water permeates similarly catalytic material on other worlds, life may also be sustained by water radiolysis.
    Description: This project was funded by the US National Science Foundation (through grant NSF-OCE-1130735 and the Center for Deep Dark Energy Biosphere Investigations [C-DEBI; grant NSF-OCE-0939564]); the National Aeronautics and Space Administration (grant NNX12AD65G); the U.S. Science Support Program, IODP; and a Schlanger Ocean Drilling Fellowship to J.F.S. This is a contribution to the Deep Carbon Observatory (DCO). It is C-DEBI publication 553.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
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    Bacterial diversity and community composition from seasurface to subseafloor (2016)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-26
    Description: © The International Society for Microbial Ecology, 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ISME Journal 10 (2016): 979–989, doi:10.1038/ismej.2015.175.
    Description: We investigated compositional relationships between bacterial communities in the water column and those in deep-sea sediment at three environmentally distinct Pacific sites (two in the Equatorial Pacific and one in the North Pacific Gyre). Through pyrosequencing of the v4–v6 hypervariable regions of the 16S ribosomal RNA gene, we characterized 450 104 pyrotags representing 29 814 operational taxonomic units (OTUs, 97% similarity). Hierarchical clustering and non-metric multidimensional scaling partition the samples into four broad groups, regardless of geographic location: a photic-zone community, a subphotic community, a shallow sedimentary community and a subseafloor sedimentary community (greater than or equal to1.5 meters below seafloor). Abundance-weighted community compositions of water-column samples exhibit a similar trend with depth at all sites, with successive epipelagic, mesopelagic, bathypelagic and abyssopelagic communities. Taxonomic richness is generally highest in the water-column O2 minimum zone and lowest in the subseafloor sediment. OTUs represented by abundant tags in the subseafloor sediment are often present but represented by few tags in the water column, and represented by moderately abundant tags in the shallow sediment. In contrast, OTUs represented by abundant tags in the water are generally absent from the subseafloor sediment. These results are consistent with (i) dispersal of marine sedimentary bacteria via the ocean, and (ii) selection of the subseafloor sedimentary community from within the community present in shallow sediment.
    Description: This study was funded by the Biological Oceanography Program of the US National Science Foundation (grant OCE-0752336) and by the NSF-funded Center for Dark Energy Biosphere Investigations (grant NSF-OCE-0939564).
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Relationship of bacterial richness to organic degradation rate and sediment age in subseafloor sediment (2016)
    American Society for Microbiology
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Applied and Environmental Microbiology 82 (2016): 4994-4999, doi:10.1128/AEM.00809-16.
    Description: Subseafloor sediment hosts a large, taxonomically rich and metabolically diverse microbial ecosystem. However, the factors that control microbial diversity in subseafloor sediment have rarely been explored. Here we show that bacterial richness varies with organic degradation rate and sediment age. At three open-ocean sites (in the Bering Sea and equatorial Pacific) and one continental margin site (Indian Ocean), richness decreases exponentially with increasing sediment depth. The rate of decrease in richness with depth varies from site to site. The vertical succession of predominant terminal electron acceptors correlates to abundance-weighted community composition, but does not drive the vertical decrease in richness. Vertical patterns of richness at the open-ocean sites closely match organic degradation rates; both properties are highest near the seafloor and decline together as sediment depth increases. This relationship suggests that (i) total catabolic activity and/or electron donor diversity exerts a primary influence on bacterial richness in marine sediment, and (ii) many bacterial taxa that are poorly adapted for subseafloor sedimentary conditions are degraded in the geologically young sediment where respiration rates are high. Richness consistently takes a few hundred thousand years to decline from near-seafloor values to much lower values in deep anoxic subseafloor sediment, regardless of sedimentation rate, predominant terminal electron acceptor, or oceanographic context.
    Description: This work, including the efforts of Mitchell L. Sogin and Steven D’Hondt, was funded by Sloan Foundation (Census of Deep Life). This work, including the efforts of Steven D’Hondt, was funded by U.S. Science Support Program for IODP. This work, including the efforts of Steven D’Hondt, was funded by National Science Foundation (NSF) (OCE- 0752336 and OCE-0939564). The work of E. A. Walsh, J. B. Kirkpatrick, R. Pockalny, and J. Sauvage was funded by the grants to S. D’Hondt.
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Archaea dominate oxic subseafloor communities over multimillion-year time scales (2019)
    American Association for the Advancement of Science
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).. The definitive version was published in Vuillemin, A., Wankel, S. D., Coskun, Ö. K., Magritsch, T., Vargas, S., Estes, E. R., Spivack, A. J., Smith, D. C., Pockalny, R., Murray, R. W., D'Hondt, S., & Orsi, W. D. Archaea dominate oxic subseafloor communities over multimillion-year time scales. Science Advances, 5(6), (2019): eaaw4108, doi: 10.1126/sciadv.aaw4108.
    Description: Ammonia-oxidizing archaea (AOA) dominate microbial communities throughout oxic subseafloor sediment deposited over millions of years in the North Atlantic Ocean. Rates of nitrification correlated with the abundance of these dominant AOA populations, whose metabolism is characterized by ammonia oxidation, mixotrophic utilization of organic nitrogen, deamination, and the energetically efficient chemolithoautotrophic hydroxypropionate/hydroxybutyrate carbon fixation cycle. These AOA thus have the potential to couple mixotrophic and chemolithoautotrophic metabolism via mixotrophic deamination of organic nitrogen, followed by oxidation of the regenerated ammonia for additional energy to fuel carbon fixation. This metabolic feature likely reduces energy loss and improves AOA fitness under energy-starved, oxic conditions, thereby allowing them to outcompete other taxa for millions of years.
    Description: This work was supported primarily by the Deutsche Forschungsgemeinschaft (DFG) project OR 417/1-1 granted to W.D.O. Preliminary work was supported by the Center for Dark Energy Biosphere Investigations project OCE-0939564 also granted to W.D.O. Publication of the manuscript was supported by the LMU Mentoring Program. The expedition was funded by the US National Science Foundation through grant NSF-OCE-1433150 to A.J.S, S.D., and R.P. R.W.M. led the expedition. This is a contribution of the Deep Carbon Observatory (DCO). S.D.W. acknowledges partial support from NASA Exobiology (NNX15AM04G). This is Center for Dark Energy Biosphere Investigations (C-DEBI) publication number 463. Portions of this material are based on work supported while R.W.M. was serving at the National Science Foundation. A portion of this work was performed as part of the LMU Masters Program “Geobiology and Paleobiology” (MGAP).
    Repository Name: Woods Hole Open Access Server
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  • 6
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    Atribacteria reproducing over millions of years in the Atlantic abyssal subseafloor (2020)
    American Society for Microbiology
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Vuillemin, A., Vargas, S., Coskun, O. K., Pockalny, R., Murray, R. W., Smith, D. C., D'Hondt, S., & Orsi, W. D. Atribacteria reproducing over millions of years in the Atlantic abyssal subseafloor. Mbio, 11(5), (2020): e01937-20, doi:10.1128/mBio.01937-20.
    Description: How microbial metabolism is translated into cellular reproduction under energy-limited settings below the seafloor over long timescales is poorly understood. Here, we show that microbial abundance increases an order of magnitude over a 5 million-year-long sequence in anoxic subseafloor clay of the abyssal North Atlantic Ocean. This increase in biomass correlated with an increased number of transcribed protein-encoding genes that included those involved in cytokinesis, demonstrating that active microbial reproduction outpaces cell death in these ancient sediments. Metagenomes, metatranscriptomes, and 16S rRNA gene sequencing all show that the actively reproducing community was dominated by the candidate phylum “Candidatus Atribacteria,” which exhibited patterns of gene expression consistent with fermentative, and potentially acetogenic, metabolism. “Ca. Atribacteria” dominated throughout the 8 million-year-old cored sequence, despite the detection limit for gene expression being reached in 5 million-year-old sediments. The subseafloor reproducing “Ca. Atribacteria” also expressed genes encoding a bacterial microcompartment that has potential to assist in secondary fermentation by recycling aldehydes and, thereby, harness additional power to reduce ferredoxin and NAD+. Expression of genes encoding the Rnf complex for generation of chemiosmotic ATP synthesis were also detected from the subseafloor “Ca. Atribacteria,” as well as the Wood-Ljungdahl pathway that could potentially have an anabolic or catabolic function. The correlation of this metabolism with cytokinesis gene expression and a net increase in biomass over the million-year-old sampled interval indicates that the “Ca. Atribacteria” can perform the necessary catabolic and anabolic functions necessary for cellular reproduction, even under energy limitation in millions-of-years-old anoxic sediments.
    Description: This work was supported primarily by the Deutsche Forschungsgemeinschaft (DFG) project OR 417/1-1 granted to W.D.O. Preliminary work was supported by the Center for Dark Energy Biosphere Investigations project OCE-0939564 also granted to W.D.O. The expedition was funded by the US National Science Foundation through grant NSF-OCE-1433150 to S.D. and R.P. R.W.M. led the expedition. Shipboard microbiology efforts were supported by the Center for Dark Energy Biosphere Investigations (C-DEBI grant NSF-OCE-0939564). This is C-DEBI publication 545. This is a contribution of the Deep Carbon Observatory (DCO).
    Keywords: Deep biosphere ; Energy limit to life ; Atribacteria ; Acetogenesis ; Metagenomics ; Transcriptomics ; Fermentation ; Bacterial microcompartment ; Clade JS1 ; Metatranscriptomics ; Subseafloor life
    Repository Name: Woods Hole Open Access Server
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  • 7
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    Sequential variation of carbonate cycles in South Atlantic DSDP locations (1990)
    PANGAEA
    In:  Supplement to: Herbert, Timothy D; d'Hondt, Steven L (1990): Precessional climate cyclicity in Late Cretaceous-Early Tertiary marine sediments: a high resolution chronometer of Cretaceous-Tertiary boundary events. Earth and Planetary Science Letters, 99(3), 263-275, https://doi.org/10.1016/0012-821X(90)90115-E
    Details
    Publication Date: 2024-01-06
    Description: We report well-dated Late Cretaceous and Early Tertiary precessional climatic cycles, recorded by rhythmic carbonate maxima and minima in South Atlantic deep sea sites. Spectral analyses of digitized sediment color, a suitable carbonate proxy, show prominent regularities in the spacing marl-carbonate beds. Magnetostratigraphic dating over a number of magnetic chrons constrains the duration of the cycles, which can be detected over at least 20 Myr of sedimentation at 7 coring locations. Their mean absolute period of 23.5 +/- 4.4kyr agrees closely with the predicted late Cretaceous precessional period of 20.8 kyr. Because they can be matched to a physical forcing mechanism with a known repeat time, the cycles offer a new high-resolution tool to measure rates of climate change before and after the Cretaceous-Tertiary (K/T) boundary. From counts of carbonate cycles, we derive the position of the K/T boundary within C29R at 350 kyr after the base of the reversal. The constancy of cycle thickness (linearly related to sedimentation rate) and amplitude up to the “boundary clay” does not give evidence for climate instability preceding the boundary. Orbital chronometry records a step-function decrease in sediment accumulation rate at the Cretaceous-Tertiary boundary that is consistent with a geologically instantaneous event.
    Keywords: 39-356; 39-357; 72-516F; 74-525A; 74-527; 74-528; 74-529; Deep Sea Drilling Project; DRILL; Drilling/drill rig; DSDP; Glomar Challenger; Leg39; Leg72; Leg74; South Atlantic; South Atlantic/CONT RISE; South Atlantic/CREST; South Atlantic/PLATEAU; South Atlantic/RIDGE; South Atlantic/SLOPE
    Type: Dataset
    Format: application/zip, 7 datasets
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  • 8
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    Planktic foraminiferal assemblage turnover at the Cretaceous-Tertiary boundary (1991)
    PANGAEA
    In:  Supplement to: d'Hondt, Steven L; Keller, Gerta (1991): Some patterns of planktic foraminiferal assemblage turnover at the Cretaceous-Tertiary boundary. Marine Micropaleontology, 17(1-2), 77-118, https://doi.org/10.1016/0377-8398(91)90024-Z
    Details
    Publication Date: 2024-01-06
    Description: Three uppermost Cretaceous through basal Paleocene stratigraphic sequences are examined for planktic foraminiferal assemblage stability and temporal succession patterns. These sequences are at mid-latitude South Atlantic DSDP Site 528, then-equatorial Pacific DSDP Site 577 and the Tethyan shelf Ben Gurion section of the Negev, Israel. In order to better estimate biogeographic patterns and habitat preferences, the results of these analyses are compared to previous Cretaceous biogeographic studies and to previous analyses of Cretaceous-Tertiary (K/T) boundary shelf and epicontinental sections. Results indicate that immediately following the K/T boundary, the examined epicontinental and open-ocean sites were exploited primarily by previously epicontinental planktic foraminiferal assemblages. This pattern of K/T boundary assemblage dominance suggests the geologically instantaneous break-down of Late Cretaceous epicontinental and open-ocean biogeographic provincialization. This shift in open-ocean foraminiferal assemblages is not consistent with models of nonselective K/T boundary extinctions, but is consistent with models of extinction resistence and offshore expansion of nearshore taxa. The re-establishment of stable biogeographic differences between open-ocean and epicontinental planktic foraminiferal assemblages occurs by the basal Parvularugoglobigerina eugubina Zone. At open-ocean sites 528 and 577 and the outershelf Ben Gurion section, P0 and P. eugubina Zone faunal records are marked by a pronounced alternation between Paleocene biserial- and non-biserial-dominated assemblages, This alternation appears strongly damped at shelf and epicontinental sections previously examined. The first appearance and peak magnitude of abundant earliest Paleocene trochospiral forms (Parvularugoglobigerina, Eoglobigerina, Morozovella, Globoconusa) also vary from site to site and may depend closely on levels of primary carbonate productivity.
    Keywords: 74-528; 86-577; Ben_Gurion; Deep Sea Drilling Project; DRILL; Drilling/drill rig; DSDP; Glomar Challenger; HAND; Israel; Leg74; Leg86; North Pacific; Sampling by hand; South Atlantic/RIDGE
    Type: Dataset
    Format: application/zip, 6 datasets
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  • 9
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    Stable carbon and oxygen isotope record of Maastrichtian sediments from DSDP Site 74-528 in the South Atlantic Ocean (1994)
    PANGAEA
    In:  Supplement to: d'Hondt, Steven L; Lindinger, Matthias (1994): A stable isotopic record of the Maastrichtian ocean-climate system: South Atlantic DSDP site 528. Palaeogeography, Palaeoclimatology, Palaeoecology, 112(3-4), 363-378, https://doi.org/10.1016/0031-0182(94)90081-7
    Details
    Publication Date: 2024-01-06
    Description: The upper Maastrichtian interval of mid-latitude South Atlantic Deep Sea Drilling Project site 528 spans approximately the last 4 million years of the Cretaceous. The isotopic record of this sequence indicates that relatively large (0.5-1.0‰) late Maastrichtian oxygen and carbon isotopic shifts occurred on geologically short time scales (less than 100-500 kyr). Comparison with previous oxygen isotopic data suggests that in high- and mid-latitude southern oceans the multimillion-year Maastrichtian cooling trend largely resulted from geologically rapid climatic 'steps'. Coincidence of the largest carbon and oxygen isotopic excursions suggests that relatively large and geologically rapid changes in marine and atmospheric carbon content may have directly contributed to the long-term cooling of the Late Cretaceous 'greenhouse'.
    Keywords: 74-528; 74-528_Site; COMPCORE; Composite Core; Deep Sea Drilling Project; DRILL; Drilling/drill rig; DSDP; Glomar Challenger; Leg74; South Atlantic/RIDGE
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 10
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    Pass-through measurements of magnetic susceptibility from IODP Hole 329-U1370B (2014)
    PANGAEA
    Details
    Publication Date: 2024-01-06
    Keywords: 329-U1370B; DEPTH, sediment/rock; Depth, top/min; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Exp329; Instrument; Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Joides Resolution; Sample code/label; South Pacific Gyre Microbiology; Susceptibility; Time Stamp
    Type: Dataset
    Format: text/tab-separated-values, 2292 data points
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