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  • 1
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    PANGAEA
    In:  Supplement to: Black, Benjamin A; Neely, Ryan R; Lamarque, Jean-François; Elkins-Tanton, Linda; Kiehl, Jeffrey T; Shields, Christine A; Mills, Michael; Bardeen, Charles (2018): Systemic swings in end-Permian climate from Siberian Traps carbon and sulfur outgassing. Nature Geoscience, 11(12), 949-954, https://doi.org/10.1038/s41561-018-0261-y
    Publication Date: 2023-09-09
    Description: Siberian Traps flood basalt magmatism coincided with the end-Permian mass extinction approximately 252 million years ago. Proposed links between magmatism and ecological catastrophe include global warming, global cooling, ozone depletion, and changes in ocean chemistry. However, the critical combinations of environmental changes responsible for global mass extinction are undetermined. In particular, the combined and competing climate effects of sulfur and carbon outgassing remain to be quantified. Here we present model outputs from global climate model simulations of flood basalt outgassing that account for sulfur chemistry and aerosol microphysics with coupled atmosphere and ocean circulation. We consider the effects of sulfur and carbon in isolation and in tandem. We find that coupling with the ocean strongly influences the climate response to flood basalt-scale outgassing. We suggest that sulfur and carbon emissions from the Siberian Traps combined to generate systemic swings in temperature, ocean circulation, and hydrology within a longer-term trend towards a greenhouse world in the early Triassic. Read README.PDF first for a description of the remaining files.
    Type: Dataset
    Format: application/zip, 838.3 MBytes
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  • 2
    Publication Date: 2023-11-29
    Description: Caldera footprints and erupted magma volumes provide a unique constraint on vertical dimensions of upper crustal magma reservoirs that feed explosive silicic eruptions. Here we define a Vertical Separation (VS) ratio in which we compare the geometric vertical extent with the range of depths indicated petrologically by melt inclusion water and CO2 saturation pressures for fifteen caldera-forming eruptions spanning ∼100 km3 to ∼103 km3 in volume. We supplement melt inclusion saturation pressures with rhyolite-MELTS barometry and plagioclase-melt hygrometry to generate a petrologic image of magma reservoir architecture. We find that pre-eruptive upper crustal magma reservoirs range from contiguous bodies (where petrologic and geometric estimates match closely) to vertically dispersed structures. Vertically dispersed pre-eruptive reservoirs are more common among intermediate-volume eruptions than among the smallest and largest caldera-forming eruptions. We infer that the architecture of magma reservoirs tracks the thermomechanical evolution of large volcanic systems.
    Type: Article , PeerReviewed
    Format: text
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  • 3
    Publication Date: 2016-07-07
    Description: A core viral protein binds host nucleosomes to sequester immune danger signals Nature 535, 7610 (2016). doi:10.1038/nature18317 Authors: Daphne C. Avgousti, Christin Herrmann, Katarzyna Kulej, Neha J. Pancholi, Nikolina Sekulic, Joana Petrescu, Rosalynn C. Molden, Daniel Blumenthal, Andrew J. Paris, Emigdio D. Reyes, Philomena Ostapchuk, Patrick Hearing, Steven H. Seeholzer, G. Scott Worthen, Ben E. Black, Benjamin A. Garcia & Matthew D. Weitzman Viral proteins mimic host protein structure and function to redirect cellular processes and subvert innate defenses. Small basic proteins compact and regulate both viral and cellular DNA genomes. Nucleosomes are the repeating units of cellular chromatin and play an important part in innate immune responses. Viral-encoded core basic proteins compact viral genomes, but their impact on host chromatin structure and function remains unexplored. Adenoviruses encode a highly basic protein called protein VII that resembles cellular histones. Although protein VII binds viral DNA and is incorporated with viral genomes into virus particles, it is unknown whether protein VII affects cellular chromatin. Here we show that protein VII alters cellular chromatin, leading us to hypothesize that this has an impact on antiviral responses during adenovirus infection in human cells. We find that protein VII forms complexes with nucleosomes and limits DNA accessibility. We identified post-translational modifications on protein VII that are responsible for chromatin localization. Furthermore, proteomic analysis demonstrated that protein VII is sufficient to alter the protein composition of host chromatin. We found that protein VII is necessary and sufficient for retention in the chromatin of members of the high-mobility-group protein B family (HMGB1, HMGB2 and HMGB3). HMGB1 is actively released in response to inflammatory stimuli and functions as a danger signal to activate immune responses. We showed that protein VII can directly bind HMGB1 in vitro and further demonstrated that protein VII expression in mouse lungs is sufficient to decrease inflammation-induced HMGB1 content and neutrophil recruitment in the bronchoalveolar lavage fluid. Together, our in vitro and in vivo results show that protein VII sequesters HMGB1 and can prevent its release. This study uncovers a viral strategy in which nucleosome binding is exploited to control extracellular immune signalling.
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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