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  • 1
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2011
    In:  Cancer Research Vol. 71, No. 8_Supplement ( 2011-04-15), p. SY15-01-SY15-01
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 71, No. 8_Supplement ( 2011-04-15), p. SY15-01-SY15-01
    Abstract: Ewing sarcoma family tumors (ESFT) are aggressive bone and soft tissue tumors that primarily affect children and young adults. Despite intensive therapy, relapse is common and for patients who relapse or present with overt metastatic disease survival rates are only 20%. Intensification of current treatment regimens is impossible due to dose-limiting toxicities. Therefore, novel, less toxic approaches to therapy are desperately needed. For ESFT as well as other pediatric tumors, these novel therapies will ideally target tumor cells whilst sparing normal developing tissues. Attainment of this important goal demands that we better understand the molecular underpinnings of ESFT and how its development deviates from normal. ESFT can occur in any anatomic location and their cellular origin remains elusive. Genetically they are characterized by expression of chimeric fusion oncogenes, most commonly EWS-FLI1. Although it functions as an oncogene in ESFT, EWS-FLI1 is toxic to most normal cells. Recent data from our lab and others indicate that some bone marrow-derived mesenchymal (BM-MSC) and neural crest-derived (NCSC) stem cells are uniquely tolerant of EWS-FLI1. Moreover, the genetic profile of ESFT, combined with its ability to differentiate in vivo and in vitro into both neural and mesenchymal lineages implicates multipotent neuro-mesenchymal stem cells as putative cells of origin. Significantly, recent studies in model organisms have demonstrated that rare populations of NCSC persist in adult tissues and that some MSC are actually of neural crest rather than mesodermal origin. We hypothesized that these NCSC are the likely cellular ancestors of ESFT and sought to develop a human NCSC-based model of EWS-FLI1-induced transformation and ESFT initiation. NCSC are exquisitely rare in postembryonic tissues. Therefore, we devised a novel method to generate and isolate NCSC from in vitro differentiating human embryonic stem cells (hESC). Importantly, these cells, which are sorted on the basis of NCSC-markers p75 and HNK-1, retain multilineage neural crest differentiation potential in vitro and in vivo. In addition, these hNCSC can be induced to generate MSC-like cells in vitro (NC-MSC) that can in turn be differentiated along neural and glial as well as osteogenic and adipogenic lineages. Importantly, lentiviral transduction of hNCSC and their NC-MSC progeny with EWS-FLI1 is well tolerated demonstrating that, like BM-MSC, human NCSC are permissive for expression of the fusion oncoprotein. Having established that NCSC tolerate EWS-FLI1 we next evaluated genetic changes downstream of oncogene activation and also compared gene expression of primary ESFT to the three different stem cell populations (hNCSC, NC-MSC, BM-MSC) as well as 11 normal adult tissues. Significantly, whole genome expression profiling studies revealed that the molecular signature of established ESFT is more similar to hNCSC than any other tissue or stem cell population. In addition, expression of EWS-FLI1 in NC-MSC partially reactivated the more primitive NCSC genetic program and also initiated transition to a more ESFT-like state. These data suggest that EWS-FLI1-induced maintenance or reactivation of the NCSC program is integral to ESFT pathogenesis. Consistent with this hypothesis, we found that EWS-FLI1-expressing cells retained expression of NCSC markers, maintained the ability to form neurospheres in nonadherent conditions and upregulated expression of the polycomb proteins BMI-1 and EZH2. Moreover, unlike empty vector-transduced cells, EWS-FLI1+ cells avoided cellular senescence and this was dependent upon continued overexpression of BMI-1 and epigenetic repression of p16. Recent studies of epithelial tumors have discovered that polycomb target genes that are normally reversibly silenced by histone modifications in normal stem cells are often aberrantly and heritably silenced by DNA hypermethylation in cancer. We have found that EWS-FLI1 induces BMI-1 and EZH2 in hNCSC and other groups have confirmed that EZH2 is a direct transcriptional target of the fusion protein. It is our current hypothesis that EWS-FLI1-mediated deregulation of polycomb proteins in NCSC precipitates changes in the epigenome that ultimately result in DNA methylation-mediated silencing of developmental pathways, thereby contributing to maintenance of stemness and susceptibility to malignant transformation. In support of this, kinetic genome-wide evaluation of transduced NC-MSC revealed that changes in gene expression downstream of EWS-FLI1 activation are highly dynamic. In particular, with increasing passage of time, EWS-FLI1+ cells progressively downregulate transcripts involved in cellular differentiation and upregulate genes that promote cell proliferation. To begin to address whether changes in DNA methylation at the promoters of polycomb target genes might underlie these progressive changes in gene expression we used Illumina GoldenGate technology to compare ESFT tumor and cell line samples to hNCSC, BM-MSC and normal adult tissues. Significantly, we found that transcription factors that normally instruct neural differentiation are progressively silenced in EWS-FLI1-transduced NC-MSC and are also aberrantly targeted for DNA promoter methylation in established tumors. We are now performing kinetic, genome-wide studies of DNA methylation in EWS-FLI1+ NC-MSC to determine if EWS-FLI1 globally induces altered methylation of polycomb target gene promoters. Updated data from these studies will be presented at the meeting as available. In summary, we have developed a novel developmental stage and species-appropriate model in which to study the cellular origin of ESFT and the molecular mechanisms of EWS-FLI1-induced transformation. Our studies thus far indicate that ESFT is a stem cell tumor in which a single genetic mutation induces profound epigenetic changes that ultimately cooperate to induce malignant transformation. We are now investigating the nature of cooperating cell-autonomous as well as microenvironmental factors that are necessary to convert an EWS-FLI1+ NCSC into an ESFT tumor-initiating cell. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 102nd Annual Meeting of the American Association for Cancer Research; 2011 Apr 2-6; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2011;71(8 Suppl):Abstract nr SY15-01. doi:10.1158/1538-7445.AM2011-SY15-01
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2011
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  • 2
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  • 3
    Online Resource
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    American Association for Cancer Research (AACR) ; 2011
    In:  Cancer Research Vol. 71, No. 8_Supplement ( 2011-04-15), p. LB-233-LB-233
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 71, No. 8_Supplement ( 2011-04-15), p. LB-233-LB-233
    Abstract: Ewing sarcoma family tumors (ESFT) are aggressive bone and soft tissue tumors of putative neural crest (NCSC) and/or mesenchymal (MSC) stem cell origin. It is our hypothesis that the initiation and progression of ESFT depends on aberrant silencing of genes that normally instruct terminal differentiation of NCSC and their progeny. Further, we hypothesize that this is a downstream consequence of EWS-FLI1-mediated activation of polycomb proteins. In the current study we are using human NCSC to define the consequences of EWS-FLI1 oncogene expression on DNA methylation in developing neural crest cells. NCSC were isolated from in vitro differentiating embryonic stem cells by FACS-based sorting. NCSC were expanded in culture in self-renewal media or induced to differentiate either as unmanipulated cells or following lentiviral transduction with EWS-FLI1-EGFP or EGFP control virus. Cells were studied for differentiation capacity and for gene expression by RT-PCR and Affymetrix Human Exon array profiling. Genomic DNA was isolated at various timepoints for evaluation of genome wide DNA methylation using Illumina 450K BeadChips. Our studies thus far show that clonal populations of NCSC can be induced to generate neural, glial and myofibroblastic progeny. In addition, NCSC rapidly adopt an MSC-like phenotype in adherent culture and these cells (NC-MSC) retain the ability to differentiate into peripherin positive peripheral nerves as well as adipogenic and osteogenic progeny. Both NCSC and NC-MSC tolerate EWS-FLI1 and expression of EWS-FLI1 in NC-MSC partially reactivates the more primitive NCSC genetic program. EWS-FLI1-expressing cells up-regulate expression of the polycomb proteins BMI-1 and EZH2 and avoid cellular senescence. Kinetic transcriptional evaluation of transduced cells revealed that changes in gene expression downstream of EWS-FLI1 are highly dynamic. In particular, with increasing passage, EWS-FLI1+ cells progressively down-regulate transcripts involved in neural differentiation. Preliminary Illumina GoldenGate assays revealed that the promoters of many polycomb target genes involved in neural differentiation are relatively hypermethylated in ESFT compared to normal adult tissues and stem cells. We are now performing Illumina 450K assays of differentiating NCSC in the presence or absence of EWS-FLI1 to define the consequences of oncogene activation on the normal evolution of DNA methylation over time. Updated data from these studies will be presented at the meeting. In summary, we have developed a human developmental model in which to study the the molecular mechanisms of EWS-FLI1-induced transformation. Our studies thus far suggest that ESFT is a stem cell tumor in which a single genetic mutation induces profound epigenetic changes that ultimately cooperate to induce tumor formation. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 102nd Annual Meeting of the American Association for Cancer Research; 2011 Apr 2-6; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2011;71(8 Suppl):Abstract nr LB-233. doi:10.1158/1538-7445.AM2011-LB-233
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2011
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  • 4
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 70, No. 8_Supplement ( 2010-04-15), p. 4239-4239
    Abstract: Ewing sarcoma family of tumors (ESFT) are aggressive bone and soft tissue tumors of unknown cellular origin. Most ESFT express EWS-FLI1, a chimeric protein which functions as a growth-promoting oncogene in ESFT but is toxic to most normal cells. A major difficulty in understanding EWS-FLI1 function has been the lack of an adequate model in which to study EWS-FLI1-induced transformation. Although the cell of origin of ESFT remains elusive, both mesenchymal (MSC) and neural crest (NCSC) have been implicated. We recently developed the tools to generate NCSC from human embryonic stem cells (hNCSC). In the current study we have used this model to test the hypothesis that NCSC are the cells of origin of ESFT and to evaluate the consequences of EWS-FLI1 expression on human NCSC biology. ESFT demonstrate variable degrees of neuro-mesenchymal differentiation potential. Similarly, we have found that hNCSC can be induced to differentiate into neural, glial and mesenchymal progeny. Significantly, Affymetrix whole genome expression profiling of 32 primary ESFT, 11 normal adult tissues, bone marrow-derived MSC and hNCSC revealed that ESFT are more similar to hNCSC than any other normal tissue, including MSC, thus further implicating NCSC in the origin of ESFT. To evaluate the consequences of EWS-FLI1 on these multipotent stem cells, hNCSC were stably transduced with an EWS-FLI1 lentivirus. Unlike most normal cells, hNCSC tolerated expression of the oncoprotein. Moreover, EWS-FLI1-transduced hNCSC continued to proliferate and maintain EWS-FLI1 expression in culture for several weeks after transduction. Affymetrix HuEx 1.0 expression profiling of hNCSC cells five days post-transduction with EWS-FLI1 demonstrated the expected induction and repression of well-established EWS-FLI1 targets and identified numerous other novel EWS-FLI1-regulated genes that are likely to be cell-type and situation specific. In contrast to control vector-transduced cells, EWS-FLI1 transduced hNCSC reproducibly maintained expression of the NCSC markers p75 and HNK-1, even after transfer to differentiation-inducing conditions. In addition, expression of the polycomb genes BMI1 and EZH2 was consistently and significantly upregulated in EWS-FLI1-transduced cells. In keeping with persistent expression of these stem cell-associated genes, EWS-FLI1-expressing cells retained the ability to form neurospheres upon transfer to non-adherent conditions and also the ability to differentiate into neural and mesenchymal lineages several weeks following transduction. In contrast, after six weeks in differentiation media, control cells had upregulated p16 and had undergone senescence. Together these data implicate NCSC in the origin of ESFT and suggest that EWS-FLI1 enables malignant transformation by inducing maintenance of their multipotent, stem cell state through deregulation of polycomb genes. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 101st Annual Meeting of the American Association for Cancer Research; 2010 Apr 17-21; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2010;70(8 Suppl):Abstract nr 4239.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2010
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  • 5
    In: Developmental Cell, Elsevier BV, Vol. 14, No. 4 ( 2008-04), p. 605-615
    Type of Medium: Online Resource
    ISSN: 1534-5807
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2008
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    SSG: 12
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  • 6
    In: Lung Cancer, Elsevier BV, Vol. 184 ( 2023-10), p. 107344-
    Type of Medium: Online Resource
    ISSN: 0169-5002
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2023
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  • 7
    In: Journal of Cancer Research and Clinical Oncology, Springer Science and Business Media LLC, Vol. 149, No. 2 ( 2023-02), p. 913-919
    Abstract: An increasing number of international studies demonstrate serious negative effects of the COVID-19 pandemic on the timely diagnosis of cancer and on cancer treatment. Our study aimed to quantitatively and qualitatively evaluate the capacities of German Comprehensive Cancer Centers (CCCs) in different areas of complex oncology care during the first 2 years of the COVID-19 pandemic. Methods Prospective panel survey over 23 rounds among 18 CCCs in Germany between March 2020 and June 2022. Results The COVID-19 pandemic substantially affected the oncological care system in Germany during the first 2 years. Persistent limitations of care in CCCs primarily affected follow-up (− 21%) and psycho-oncologic care (− 12%), but also tumor surgery (− 9%). Substantial limitations were also reported for all other areas of multidisciplinary oncological care. Conclusions This study documents the limitations of oncological care during the COVID-19 pandemic and highlights the need to develop strategies to avoid similar limitations in the future.
    Type of Medium: Online Resource
    ISSN: 0171-5216 , 1432-1335
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
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  • 8
    Online Resource
    Online Resource
    The Company of Biologists ; 2016
    In:  Development ( 2016-01-01)
    In: Development, The Company of Biologists, ( 2016-01-01)
    Abstract: The gene regulatory network controlling dorsoventral axis formation in insects has undergone drastic evolutionary changes. In Drosophila, a stable long-range gradient of Toll signalling specifies ventral cell fates and restricts BMP signalling to the dorsal half of the embryo. In Tribolium, on the other hand, Toll signalling is transient and only indirectly controls BMP signalling. While the Drosophila network is exquisitely understood, much less is known about Tribolium. In order to gain unbiased insights into the Tribolium network we performed comparative transcriptome analyses of embryos with various dorsoventral pattering defects produced by parental RNAi for Toll and BMP signalling components. We also included embryos lacking the mesoderm (produced by Tc-twist RNAi) and characterized similarities and differences between Drosophila and Tribolium twist loss-of-function phenotypes. Using stringent conditions, we identified over 750 differentially expressed genes and analysed a subset with altered expression in more than one knockdown condition. We found new genes with localized expression and showed that conserved genes frequently possess earlier and stronger phenotypes than their Drosophila orthologs. For example, the leucine-rich repeat (LRR) protein Tartan, which has only a minor influence on nervous system development in Drosophila, is essential for early neurogenesis in Tribolium, and the Tc-zinc-finger homeodomain protein 1 (Tc-zfh1), the ortholog of which plays a minor role in Drosophila muscle development, is essential for maintaining early Tc-twist expression indicating an important function for mesoderm specification.
    Type of Medium: Online Resource
    ISSN: 1477-9129 , 0950-1991
    Language: English
    Publisher: The Company of Biologists
    Publication Date: 2016
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    SSG: 12
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  • 9
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 40, No. 16_suppl ( 2022-06-01), p. e21117-e21117
    Abstract: e21117 Background: Fusions in the ROS1 proto-oncogene are among the best treatable genetic aberrations in Non-small cell lung cancer (NSCLC). Besides the occurrence of solvent-front mutations (SFM) in acquired resistance to targeted therapy, little is known about ROS1 aberrations other than fusions. We analyzed molecular and clinical characteristics and metastatic patterns of ROS1 mutations in NSCLC patients without activating ROS1 fusions or SFMs. Methods: Next-generation sequencing (NGS) was performed on tissue samples from NSCLC patients within the National Network Genomic Medicine (nNGM). Patients with activating ROS1 fusions detected by fluorescence in-situ hybridization (FISH) were excluded. Staging and restaging procedures were performed following local standards from each partner. We analyzed the mutations’ characteristics, co-occurring mutations and metastatic patterns. Results: Of 8072 patients analyzed by NGS between 2018 and 2021, 118 (1.5%) patients harbored ROS1 mutations. Most patients were male (76.3%) and had adenocarcinoma histology (57.6%). The median age at diagnosis amounted to 68 years. Nearly all of the patients (96.5%) had a smoking history, amassing 40 pack-years on average. Besides TP53 mutations (61.0%), KRAS (25.4%), EGFR (7.6%), PIK3CA and FGFR1-4 mutations (5.9% each) co-occurred most frequently. In 12 (10.2%) patients, ROS1 mutation was the only detected aberration. The majority (59.3%) of patients had UICC stage IV whereby 27.2% of patients featured Stage III; about 7% fall upon stage I and II. The metastatic pattern of all stage IV patients shows that 22.9% of metastasis is allotted to cerebral, 12.5% to lung, 16.7% to subdiaphragmatic, 14.9% to bone and 6.3% to skin metastasis. Thereby, the patients’ subgroup with mutually exclusive ROS1 mutations (10.2%) resembles this trend: about a half of these patients had UICC stage IV, too, and the metastasis distribution featured similar characteristics. Conclusions: The cohort contrasts the clinical characteristics of patients with ROS1 fusion regarding sex, age, and histology. This evidence implies a basic clinical impact exerted by this molecular subtype. We warrant further research on the detected mutations to characterize the biological impact and the potential to act as a drug target.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2022
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  • 10
    In: Lung Cancer, Elsevier BV, Vol. 144 ( 2020-06), p. 40-48
    Type of Medium: Online Resource
    ISSN: 0169-5002
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2020
    detail.hit.zdb_id: 2025812-4
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