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  • 1
    Online Resource
    Online Resource
    American Society for Microbiology ; 2005
    In:  Applied and Environmental Microbiology Vol. 71, No. 10 ( 2005-10), p. 6375-6378
    In: Applied and Environmental Microbiology, American Society for Microbiology, Vol. 71, No. 10 ( 2005-10), p. 6375-6378
    Abstract: A nodule-shaped microbial mat was found subsurface in sediments of a gas seep in the anoxic Black Sea. This mat was dominated by ANME-1 archaea and consumed methane and sulfate simultaneously. We propose that such subsurface mats represent the initial stage of previously investigated microbial reefs.
    Type of Medium: Online Resource
    ISSN: 0099-2240 , 1098-5336
    RVK:
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2005
    detail.hit.zdb_id: 223011-2
    detail.hit.zdb_id: 1478346-0
    SSG: 12
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  • 2
    In: The ISME Journal, Springer Science and Business Media LLC, Vol. 12, No. 6 ( 2018-6), p. 1414-1426
    Type of Medium: Online Resource
    ISSN: 1751-7362 , 1751-7370
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2018
    detail.hit.zdb_id: 2299378-2
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  • 3
    In: Limnology and Oceanography, Wiley, Vol. 61, No. S1 ( 2016-11)
    Abstract: Large quantities of the greenhouse gas methane (CH 4 ) are stored in the seafloor. The flux of CH 4 from the sediments into the water column and finally to the atmosphere is mitigated by a series of microbial methanotrophic filter systems of unknown efficiency at highly active CH 4 ‐release sites in shallow marine settings. Here, we studied CH 4 ‐oxidation and the methanotrophic community at a high‐CH 4 ‐flux site in the northern North Sea (well 22/4b), where CH 4 is continuously released since a blowout in 1990. Vigorous bubble emanation from the seafloor and strongly elevated CH 4 concentrations in the water column (up to 42 µM) indicated that a substantial fraction of CH 4 bypassed the highly active (up to ∼2920 nmol cm −3 d −1 ) zone of anaerobic CH 4 ‐oxidation in sediments. In the water column, we measured rates of aerobic CH 4 ‐oxidation (up to 498 nM d −1 ) that were among the highest ever measured in a marine environment and, under stratified conditions, have the potential to remove a significant part of the uprising CH 4 prior to evasion to the atmosphere. An unusual dominance of the water‐column methanotrophs by Type II methane‐oxidizing bacteria (MOB) is partially supported by recruitment of sedimentary MOB, which are entrained together with sediment particles in the CH 4 bubble plume. Our study thus provides evidence that bubble emission can be an important vector for the transport of sediment‐borne microbial inocula, aiding in the rapid colonization of the water column by methanotrophic communities and promoting their persistence close to highly active CH 4 point sources.
    Type of Medium: Online Resource
    ISSN: 0024-3590 , 1939-5590
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 2033191-5
    detail.hit.zdb_id: 412737-7
    SSG: 12
    SSG: 14
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  • 4
    In: Frontiers in Microbiology, Frontiers Media SA, Vol. 8 ( 2017-04-28)
    Type of Medium: Online Resource
    ISSN: 1664-302X
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2017
    detail.hit.zdb_id: 2587354-4
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  • 5
    In: The Depositional Record, Wiley, Vol. 7, No. 3 ( 2021-09), p. 500-519
    Abstract: Carbonates that exhibit obvious diagenetic alteration are usually excluded as archives in palaeoenvironmental studies. However, the potential impact of microbial alteration during early diagenesis is still poorly explored. To investigate the sensitivity of sulphur concentration, distribution, oxidation state and isotopic composition in marine aragonite to microbial alteration, Arctica islandica bivalves and Porites sp. corals were experimentally exposed to anaerobic microbial activity. The anoxic incubation media included a benthic bacterial strain Shewanella sediminis and a natural anoxic sediment slurry with a natural microbial community of unknown species. Combined fluorescence microscopy and synchrotron‐based analysis of the sulphur distribution and oxidation state enabled a comparison of organic matter and sulphur content in the two materials. Results revealed a higher proportion of reduced sulphur species and locally stronger fluorescence within the pristine bivalve shell compared to the pristine coral skeleton. Within the pristine bivalve specimen, reduced sulphur was enriched in layers along the inner shell margin. After incubation in the anoxic sediment slurry, this region revealed rust‐brown staining and a patchy S 2‐ distribution pattern rather than S 2‐ ‐layers. Another effect on sulphur distribution was rust‐brown coloured fibres along one growth line, revealing a locally higher proportion of sulphur. The δ 34 S value of carbonate‐associated sulphate remained largely unaffected by both incubation media, but a lower δ 34 S value of water‐soluble sulphate reflected the degradation of insoluble organic matter by microbes in both experiments. No significant alteration was detected in the coral samples exposed to microbial alteration. The data clearly identified a distinct sensitivity of organically bound sulphur in biogenic aragonite to microbial alteration even when ‘traditional’ geochemical proxies such as δ 18 O CARB or δ 13 C CARB in the carbonate did not show any effect. Differences in the intensity of microbial alteration documented are probably due to inherent variations in the concentration and nature of original organic compositions in the samples.
    Type of Medium: Online Resource
    ISSN: 2055-4877 , 2055-4877
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2816049-6
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  • 6
    Online Resource
    Online Resource
    Frontiers Media SA ; 2022
    In:  Frontiers in Marine Science Vol. 9 ( 2022-9-15)
    In: Frontiers in Marine Science, Frontiers Media SA, Vol. 9 ( 2022-9-15)
    Abstract: This paper presents the results of a study on the response of living benthic foraminifera to progressing environmental successions in a cold-seep ecosystem. Sediment samples were collected from Vestnesa Ridge (79°N, Fram Strait) at ~1200 m water depth. The distribution of live (Rose Bengal-stained) foraminifera were analyzed in the upper sediment layers in relation to pore water biogeochemical data together with the distribution of sulfur-bacterial mats and Siboglinidae tubeworms. At methane cold seeps, the process of environmental succession is strongly connected to the duration and strength of methane seepage and the intensity of methane-related biological processes, e.g, aerobic and anaerobic oxidation of methane (MOx and AOM, respectively). The results show that the distribution patterns of benthic foraminifera change according to the progressing environmental succession. The benthic foraminifera seemed to thrive in sediments with a moderate activity of seepage, dominated by MOx, i.e, at an early stage of seepage or when seepage decreases at a late stage of the succession. Species composition of the foraminiferal fauna under these conditions was similar to the control sites (outside of pockmarks with no seepage); the dominant species being Melonis barleeanus and Cassidulina neoteretis . In sediments with strong seepage and high AOM activity, the hostile environmental conditions due to the presence of toxic sulfide caused a reduction in the foraminiferal population, and samples were almost barren of foraminifera. In environments of moderate methane seepage, the presence of chemosynthetic Siboglinidae tube worms potentially support communities of the epibenthic species Cibicidoides wuellerstorfi . Despite the very different environmental conditions, the foraminiferal assemblages were very similar (or nearly absent). Therefore, the foraminiferal faunas cannot be used as exclusive indicators of past strength of methane seepage in palaeoceanographic interpretations.
    Type of Medium: Online Resource
    ISSN: 2296-7745
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2022
    detail.hit.zdb_id: 2757748-X
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  • 7
    In: Sedimentology, Wiley, Vol. 65, No. 4 ( 2018-06), p. 1390-1411
    Abstract: The earliest diagenetic post‐mortem exposure of biogenic carbonates at the sea floor and in the uppermost sediment column results in the colonization of hard‐part surfaces by bacterial communities. Some of the metabolic redox processes related to these communities have the potential to alter carbonate shell properties, and hence affect earliest diagenetic pathways with significant consequences for archive data. During a three‐month in vitro study, shell subsamples of the ocean quahog Arctica islandica (Linnaeus, 1767) were incubated in natural anoxic sediment slurries and bacterial culture medium of the heterotrophic Shewanella sediminis HAW ‐ EB 3. Bulk analyses of the liquid media from the Shewanella sediminis incubation revealed an over ten‐fold increase in total alkalinity, dissolved inorganic carbon and Ω Aragonite , and the alteration of the Mg/Ca, Mg/Sr and Sr/Ca ratios relative to control incubations without cultures. Ion ratios were most affected in the incubation with anoxic sediment, depicting a 25% decrease in Mg/Ca relative to the control. Shell sample surfaces that were exposed to both incubations displayed visible surface dissolution features, and an 8 wt% loss in calcium content. No such alteration features were detected in control shells. Apparently, alteration of shell carbonate properties was induced by microbially driven decomposition of shell intercrystalline organic constituents and subsequent opening of pathways for pore fluid–crystal exchange. This study illustrates the potential influence of benthic bacterial metabolism on biogenic carbonate archives during the initial stages of diagenetic alteration within a relatively short experimental duration of only three months. These results suggest that foremost the biological effect of bacterial cation adsorption on divalent cation ratios has the potential to complicate proxy interpretation. Results shown here highlight the necessity to consider bacterial metabolic activities in marine sediments for the interpretation of palaeo‐environmental proxies from shell carbonate archives.
    Type of Medium: Online Resource
    ISSN: 0037-0746 , 1365-3091
    URL: Issue
    RVK:
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2020955-1
    detail.hit.zdb_id: 206889-8
    SSG: 13
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  • 8
    Online Resource
    Online Resource
    Copernicus GmbH ; 2016
    In:  Biogeosciences Vol. 13, No. 14 ( 2016-07-18), p. 4065-4080
    In: Biogeosciences, Copernicus GmbH, Vol. 13, No. 14 ( 2016-07-18), p. 4065-4080
    Abstract: Abstract. The potential coupling of nitrogen (N2) fixation and sulfate reduction (SR) was explored in sediments of the Peruvian oxygen minimum zone (OMZ). Sediment samples were retrieved by a multiple corer at six stations along a depth transect (70–1025 m water depth) at 12° S, covering anoxic and hypoxic bottom water conditions. Benthic N2 fixation, determined by the acetylene reduction assay, was detected at all sites, with highest rates between 70 and 253 m and lower rates at greater depth. SR rates decreased with increasing water depth. N2 fixation and SR overlapped in sediments, suggesting a potential coupling of both processes. However, a weak positive correlation of their activity distribution was detected by principle component analysis. A potential link between N2 fixation and sulfate-reducing bacteria was indicated by the molecular analysis of nifH genes. Detected nifH sequences clustered with the sulfate-reducing bacteria Desulfonema limicola at the 253 m station. However, nifH sequences of other stations clustered with uncultured organisms, Gammaproteobacteria, and Firmicutes (Clostridia) rather than with known sulfate reducers. The principle component analysis revealed that benthic N2 fixation in the Peruvian OMZ is controlled by organic matter (positive) and free sulfide (negative). No correlation was found between N2 fixation and ammonium concentrations (even at levels 〉 2022 µM). N2 fixation rates in the Peruvian OMZ sediments were in the same range as those measured in other organic-rich sediments.
    Type of Medium: Online Resource
    ISSN: 1726-4189
    Language: English
    Publisher: Copernicus GmbH
    Publication Date: 2016
    detail.hit.zdb_id: 2158181-2
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  • 9
    In: Biogeosciences, Copernicus GmbH, Vol. 14, No. 6 ( 2017-03-29), p. 1631-1645
    Abstract: Abstract. Coastal seas may account for more than 75 % of global oceanic methane emissions. There, methane is mainly produced microbially in anoxic sediments from which it can escape to the overlying water column. Aerobic methane oxidation (MOx) in the water column acts as a biological filter, reducing the amount of methane that eventually evades to the atmosphere. The efficiency of the MOx filter is potentially controlled by the availability of dissolved methane and oxygen, as well as temperature, salinity, and hydrographic dynamics, and all of these factors undergo strong temporal fluctuations in coastal ecosystems. In order to elucidate the key environmental controls, specifically the effect of oxygen availability, on MOx in a seasonally stratified and hypoxic coastal marine setting, we conducted a 2-year time-series study with measurements of MOx and physico-chemical water column parameters in a coastal inlet in the south-western Baltic Sea (Eckernförde Bay). We found that MOx rates generally increased toward the seafloor, but were not directly linked to methane concentrations. MOx exhibited a strong seasonal variability, with maximum rates (up to 11.6 nmol L−1 d−1) during summer stratification when oxygen concentrations were lowest and bottom-water temperatures were highest. Under these conditions, 2.4–19.0 times more methane was oxidized than emitted to the atmosphere, whereas about the same amount was consumed and emitted during the mixed and oxygenated periods. Laboratory experiments with manipulated oxygen concentrations in the range of 0.2–220 µmol L−1 revealed a submicromolar oxygen optimum for MOx at the study site. In contrast, the fraction of methane–carbon incorporation into the bacterial biomass (compared to the total amount of oxidized methane) was up to 38-fold higher at saturated oxygen concentrations, suggesting a different partitioning of catabolic and anabolic processes under oxygen-replete and oxygen-starved conditions, respectively. Our results underscore the importance of MOx in mitigating methane emission from coastal waters and indicate an organism-level adaptation of the water column methanotrophs to hypoxic conditions.
    Type of Medium: Online Resource
    ISSN: 1726-4189
    Language: English
    Publisher: Copernicus GmbH
    Publication Date: 2017
    detail.hit.zdb_id: 2158181-2
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  • 10
    In: Organic Geochemistry, Elsevier BV, Vol. 89-90 ( 2015-12), p. 23-30
    Type of Medium: Online Resource
    ISSN: 0146-6380
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2015
    detail.hit.zdb_id: 2018075-5
    detail.hit.zdb_id: 428531-1
    SSG: 13
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