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  • 1
    In: Journal of Species Research, The National Institute of Biological Resources, Vol. 5, No. 2 ( 2016-06-30), p. 241-253
    Type of Medium: Online Resource
    ISSN: 2234-7909
    Language: English
    Publisher: The National Institute of Biological Resources
    Publication Date: 2016
    detail.hit.zdb_id: 2743289-0
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    The National Institute of Biological Resources ; 2016
    In:  Journal of Species Research Vol. 5, No. 2 ( 2016-06-30), p. 206-219
    In: Journal of Species Research, The National Institute of Biological Resources, Vol. 5, No. 2 ( 2016-06-30), p. 206-219
    Type of Medium: Online Resource
    ISSN: 2234-7909
    Language: English
    Publisher: The National Institute of Biological Resources
    Publication Date: 2016
    detail.hit.zdb_id: 2743289-0
    SSG: 12
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  • 3
    In: Food and Chemical Toxicology, Elsevier BV, Vol. 47, No. 9 ( 2009-09), p. 2157-2162
    Type of Medium: Online Resource
    ISSN: 0278-6915
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2009
    detail.hit.zdb_id: 1483645-2
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  • 4
    Online Resource
    Online Resource
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 12 ( 2007-12-01), p. 2870-2873
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 12 ( 2007-12-01), p. 2870-2873
    Abstract: A Gram-negative, yellow-pigmented bacterium capable of gliding motility, designated strain WPCB118 T , was isolated from fresh water collected from the Woopo wetland (Republic of Korea). Cells were rod-shaped and sometimes filamentous. The major fatty acids were iso-C 15 : 0 2-OH and/or C 16 : 1 ω 7 c (45.6 %), C 16 : 1 ω 5 c (18.5 %), iso-C 15 : 0 (9.5 %) and C 16 : 0 (8.8 %). The predominant menaquinone and polar lipid were MK-7 and phosphatidylethanolamine, respectively. The DNA G+C content was 53.3 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain WPCB118 T had an evolutionary lineage within the radiation encompassing the members of the family ‘ Flexibacteraceae ’, its closest neighbour being Spirosoma linguale LMG 10896 T (93.7 % gene sequence similarity). Data from this polyphasic study indicated that strain WPCB118 T could not be assigned to any recognized species. Strain WPCB118 T represents a novel species of the genus Spirosoma , for which the name Spirosoma rigui sp. nov. is proposed. The type strain is WPCB118 T (=KCTC 12531 T =NBRC 101117 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 5
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 62, No. Pt_10 ( 2012-10-01), p. 2495-2504
    Abstract: We have carried out a polyphasic taxonomic characterization of Bacillus beijingensis DSM 19037 T and Bacillus ginsengi DSM 19038 T , which are closely related phylogenetically to Bhargavaea cecembensis LMG 24411 T . All three strains are Gram-stain-positive, non-motile, moderately halotolerant and non-spore-forming. 16S rRNA gene sequence analyses showed that the strains constituted a coherent cluster, with sequence similarities between 99.7 and 98.7 %. The percentage similarity on the basis of amino acid sequences deduced from partial gyrB gene nucleotide sequences of these three type strains was 96.1–92.7 %. Phylogenetic trees based on the 16S rRNA gene and GyrB amino acid sequences, obtained by using three different algorithms, were consistent and showed that these three species constituted a deeply rooted cluster separated from the clades represented by the genera Bacillus , Planococcus , Planomicrobium , Sporosarcina , Lysinibacillus , Viridibacillus , Kurthia and Geobacillus , supporting their placement in the genus Bhargavaea . All three type strains have menaquinone MK-8 as the major respiratory quinone and showed similar fatty acid profiles. The main polar lipids present in the three type strains were diphosphatidylglycerol and phosphatidylglycerol, and the three strains showed peptidoglycan type A4α with l -lysine as the diagnostic diamino acid. The DNA G + C contents of Bacillus beijingensis DSM 19037 T , Bacillus ginsengi DSM 19038 T and Bhargavaea cecembensis LMG 24411 T were 53.1, 50.2 and 53.7 mol%, respectively. The level of DNA–DNA hybridization among the three strains was 57–39 %, indicating that they are members of different species of the genus Bhargavaea . The phenotypic data are consistent with the placement of these three species in a single genus and support their differentiation at the species level. On the basis of these data, we have emended the description of the genus Bhargavaea and propose the reclassification of Bacillus beijingensis and Bacillus ginsengi to the genus Bhargavaea , as Bhargavaea beijingensis comb. nov. (type strain ge10 T  = DSM 19037 T  = CGMCC 1.6762 T ) and Bhargavaea ginsengi comb. nov. (type strain ge14 T  = DSM 19038 T  = CGMCC 1.6763 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2012
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_4 ( 2013-04-01), p. 1297-1303
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_4 ( 2013-04-01), p. 1297-1303
    Abstract: Two yellow-pigmented, Gram-reaction-negative strains, designated 01SU5-P T and 03SU3-P T , were isolated from the freshwater of Woopo wetland, Republic of Korea. Both strains were aerobic, non-motile and catalase-negative. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the two isolates belong to the genus Sphingopyxis , showing the highest level of sequence similarity with respect to Sphingopyxis witflariensis W-50 T (95.4–95.7 %). The two novel isolates shared 99.4 % sequence similarity. DNA–DNA hybridization between the isolates and the type strain of S. witflariensis clearly suggested that strains 01SU5-P T and 03SU3-P T represent two separate novel species in the genus Sphingopyxis . The two strains displayed different fingerprints after PCR analysis using the repetitive primers BOX, ERIC and REP. Several phenotypic characteristics served to differentiate these two isolates from recognized members of the genus Sphingopyxis . The data from the polyphasic study presented here indicated that strains 01SU5-P T and 03SU3-P T should be classified as representing novel species in the genus Sphingopyxis , for which the names Sphingopyxis rigui sp. nov. and Sphingopyxis wooponensis sp. nov., respectively, are proposed. The type strain of Sphingopyxis rigui sp. nov. is 01SU5-P T ( = KCTC 23326 T  = JCM 17509 T ) and the type strain of Sphingopyxis wooponensis sp. nov. is 03SU3-P T ( = KCTC 23340 T  = JCM 17547 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 7
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_4 ( 2013-04-01), p. 1524-1531
    Abstract: Two orange, rod-shaped, Gram-reaction-negative, aerobic bacterial strains devoid of flagella and gliding motility, designated strains KYW371 T and KS18 were isolated from a seawater sample and a shellfish Ruditapes philippinarum , respectively, collected from Gwangyang Bay, Republic of Korea. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the two strains belonged to the family Flavobacteriaceae ; and that strain KYW371 T was most closely related to Algibacter mikhailovii LMG 23988 T (96.7 % sequence similarity), Pontirhabdus pectinivorans JC2675 T (96.3 %), Postechiella marina M091 T (95.6 %) and Hyunsoonleella jejuensis CNU004 T (95.3 %). The 16S rRNA gene sequence similarity (98.8 %) and DNA–DNA relatedness (78.1 %) between strains KYW371 T and KS18 indicated that these two strains represented a single species. The predominant cellular fatty acids of strain KYW371 T were iso-C 15 : 1 G, iso-C 15 : 0 , iso-C 15 : 0 3-OH and iso-C 17 : 0 3-OH. Flexirubin-type pigments were absent. MK-6 was the only isoprenoid quinone and the DNA G + C content was 34.8–36.6 mol%. Data from this taxonomic study employing a polyphasic approach suggested that the isolates represent a novel species in a new genus in the family Flavobacteriaceae , for which the name Marinivirga aestuarii gen. nov., sp. nov. is proposed. The type strain is KYW371 T ( = KCTC 23449 T  = JCM 17452 T ), and an additional strain of the species is KS18 ( = KCTC 23128 = JCM 16845). Emended descriptions of the genera Hyunsoonleella , Jejuia and Pontirhabdus and the species Hyunsoonleella jejuensis , Jejuia pallidilutea and Pontirhabdus pectinivorans are also proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 8
    Online Resource
    Online Resource
    Microbiology Society ; 2014
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 64, No. Pt_6 ( 2014-06-01), p. 1932-1937
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 64, No. Pt_6 ( 2014-06-01), p. 1932-1937
    Abstract: An orange, rod-shaped, Gram-reaction-negative, aerobic and gliding bacterial strain devoid of flagella, designated strain KYW614 T , was isolated from seawater collected from Gwangyang Bay, Republic of Korea. Zeaxanthin was the major carotenoid pigment produced and flexirubin-type pigments were not produced. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain KYW614 T belonged to the family Flavobacteriaceae and it was most closely related to Mesoflavibacter zeaxanthinifaciens TD-ZX30 T (96.5 %, sequence similarity). The predominant cellular fatty acids of strain KYW614 T were iso-C 15 : 1 G (10.5 %), summed feature 3 (C 16 : 1 ω7 c /C 16 : 1 ω6 c ; 10.0 %), iso-C 15 : 0 (9.5 %), C 15 : 0 (7.5 %) and iso-C 17 : 0 3-OH (7.4 %). MK-6 was the only isoprenoid quinone and the DNA G + C content was 32.6 mol%. Data from a polyphasic taxonomic study suggested that the isolate represents a novel species in the genus Mesoflavibacter , for which the name Mesoflavibacter aestuarii sp. nov. is proposed. The type strain is KYW614 T ( = KCTC 32269 T  = JCM 19524 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2014
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Microbiology Society ; 2011
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 61, No. 4 ( 2011-04-01), p. 709-715
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 61, No. 4 ( 2011-04-01), p. 709-715
    Abstract: Two non-motile, orange- or yellow-pigmented bacteria, designated strains KYW48 T and KYW147 T , were isolated from seawater collected from the South Sea, Republic of Korea. Cells of both strains were Gram-reaction-negative, aerobic and catalase- and oxidase-positive. The major fatty acids of strain KYW48 T were C 18 : 1 ω7 c (35.3 %), summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 ω7 c ) (22.7 %), C 17 : 1 ω6 c (19.8 %), C 14 : 0 2-OH (7.4 %) and C 16 : 0 (5.9 %), and those of strain KYW147 T were C 18 : 1 ω7 c (36.0 %), summed feature 3 (18.3 %), C 16 : 0 (14.7 %), 11-methyl C 18 : 1 ω7 c (10.7 %), C 16 : 0 2-OH (9.1 %) and C 18 : 1 ω9 c (8.0 %). The predominant isoprenoid quinone of both strains was ubiquinone 10 (Q-10). The DNA G+C contents of strains KYW48 T and KYW147 T were 63.8 and 67.2 mol%, respectively. A phylogenetic tree based on 16S rRNA gene sequences showed that strains KYW48 T and KYW147 T were grouped with the members of the family Erythrobacteraceae and formed a distinct clade with the members of the genus Altererythrobacter ( 〈 95.7 % sequence similarity). On the basis of the evidence presented in this study, the novel species Altererythrobacter namhicola sp. nov. (type strain KYW48 T  = KCTC 22736 T  = JCM 16345 T ) and Altererythrobacter aestuarii sp. nov. (type strain KYW147 T  = KCTC 22735 T  = JCM 16339 T ) are proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2011
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_7 ( 2013-07-01), p. 2678-2683
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_7 ( 2013-07-01), p. 2678-2683
    Abstract: A Gram-staining-negative, non-spore-forming, non-gliding and rod-shaped bacterial strain KYW566 T , was isolated from seawater of the Suncheon Bay, Korea, and its taxonomic position was investigated by using a polyphasic study. The cells contained MK-6 as the only respiratory quinone and contained iso-C 15 : 0 (13.8 %), iso-C 16 : 0 3-OH (13.1 %), anteiso-C 15 : 0 (9.3 %), iso-C 15 : 0 3-OH (8.7 %), iso-C 15 : 1 G (6.3 %) and summed feature 3 (C 16 : 1 ω7 c and/or C 16 : 1 ω6 c ) (6.0 %) as the major fatty acids. The DNA G+C content of strain KYW566 T was 41.6±0.8 mol% (mean± sd of three determinations). A phylogenetic tree based on 16S rRNA gene sequences showed that strain KYW566 T forms an evolutionary lineage within the radiation enclosing the members of the genus Lutibacter with Lutibacter flavus IMCC1507 T as its nearest neighbour (96.7 % sequence similarity). A number of phenotypic characteristics distinguished strain KYW566 T from described members of the genus Lutibacter . On the basis of the evidences presented in this study, strain KYW566 T represents a novel species, for which the name Lutibacter agarilyticus sp. nov. is proposed. The type strain is KYW566 T ( = KCTC 23842 T  = JCM 18281 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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