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  • 1
    In: Applications in Plant Sciences, Wiley, Vol. 7, No. 10 ( 2019-10)
    Abstract: Hybrid capture with high‐throughput sequencing (Hyb‐Seq) is a powerful tool for evolutionary studies. The applicability of an Asteraceae family‐specific Hyb‐Seq probe set and the outcomes of different phylogenetic analyses are investigated here. Methods Hyb‐Seq data from 112 Asteraceae samples were organized into groups at different taxonomic levels (tribe, genus, and species). For each group, data sets of non‐paralogous loci were built and proportions of parsimony informative characters estimated. The impacts of analyzing alternative data sets, removing long branches, and type of analysis on tree resolution and inferred topologies were investigated in tribe Cichorieae. Results Alignments of the Asteraceae family‐wide Hyb‐Seq locus set were parsimony informative at all taxonomic levels. Levels of resolution and topologies inferred at shallower nodes differed depending on the locus data set and the type of analysis, and were affected by the presence of long branches. Discussion The approach used to build a Hyb‐Seq locus data set influenced resolution and topologies inferred in phylogenetic analyses. Removal of long branches improved the reliability of topological inferences in maximum likelihood analyses. The Astereaceae Hyb‐Seq probe set is applicable at multiple taxonomic depths, which demonstrates that probe sets do not necessarily need to be lineage‐specific.
    Type of Medium: Online Resource
    ISSN: 2168-0450 , 2168-0450
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2019
    detail.hit.zdb_id: 2699923-7
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  • 2
    In: Annals of Botany, Oxford University Press (OUP), Vol. 131, No. 1 ( 2023-02-07), p. 71-86
    Abstract: Reproductive isolation and local establishment are necessary for plant speciation. Polyploidy, the possession of more than two complete chromosome sets, creates a strong postzygotic reproductive barrier between diploid and tetraploid cytotypes. However, this barrier weakens between polyploids (e.g. tetraploids and hexaploids). Reproductive isolation may be enhanced by cytotype morphological and environmental differentiation. Moreover, morphological adaptations to local conditions contribute to plant establishment. However, the relative contributions of ploidy level and the environment to morphology have generally been neglected. Thus, the extent of morphological variation driven by ploidy level and the environment was modelled for diploid, tetraploid and hexaploid cytotypes of Campanula rotundifolia agg. Cytotype distribution was updated, and morphological and environmental differentiation was tested in the presence and absence of natural contact zones. Methods Cytotype distribution was assessed from 231 localities in Central Europe, including 48 localities with known chromosome counts, using flow cytometry. Differentiation in environmental niche and morphology was tested for cytotype pairs using discriminant analyses. A structural equation model was used to explore the synergies between cytotype, environment and morphology. Key Results Tremendous discrepancies were revealed between the reported and detected cytotype distribution. Neither mixed-ploidy populations nor interploidy hybrids were detected in the contact zones. Diploids had the broadest environmental niche, while hexaploids had the smallest and specialized niche. Hexaploids and spatially isolated cytotype pairs differed morphologically, including allopatric tetraploids. While leaf and shoot morphology were influenced by environmental conditions and polyploidy, flower morphology depended exclusively on the cytotype. Conclusions Reproductive isolation mechanisms vary between cytotypes. While diploids and polyploids are isolated postzygotically, the environmental niche shift is essential between higher polyploids. The impact of polyploidy and the environment on plant morphology implies the adaptive potential of polyploids, while the exclusive relationship between flower morphology and cytotype highlights the role of polyploidy in reproductive isolation.
    Type of Medium: Online Resource
    ISSN: 0305-7364 , 1095-8290
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2023
    detail.hit.zdb_id: 1461328-1
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    SAGE Publications ; 2018
    In:  Evolutionary Bioinformatics Vol. 14 ( 2018-01), p. 117693431774261-
    In: Evolutionary Bioinformatics, SAGE Publications, Vol. 14 ( 2018-01), p. 117693431774261-
    Type of Medium: Online Resource
    ISSN: 1176-9343 , 1176-9343
    Language: English
    Publisher: SAGE Publications
    Publication Date: 2018
    detail.hit.zdb_id: 2227610-5
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  • 4
    Online Resource
    Online Resource
    University Library J. C. Senckenberg ; 2021
    In:  Kochia Vol. 14 ( 2021-04-16), p. 95-116
    In: Kochia, University Library J. C. Senckenberg, Vol. 14 ( 2021-04-16), p. 95-116
    Abstract: Die Sandschaumkresse Arabidopsis arenosa kommt in zwei Zytotypen vor, dem diploiden und dem tetraploiden. Für Deutschland waren bisher keine diploiden Populationen sicher nachgewiesen und untersucht. In dieser Studie zeigen wir, dass sich das Verbreitungsgebiet diploider A. arenosa auf die deutsche Ostseeküste erstreckt. Auf der Ostseeinsel Rügen fanden wir drei Metapopulationen im hochdynamischen Habitat der Sand- Steilabbrüche, bei dessen Besiedlung durch A. arenosa Biokrusten ("Biological soil crusts") und "Insel-Schollen" eine Rolle zu spielen scheinen. Funde auf ruderal getönten Standorten waren selten, mit nur einer Metapopulation. Wir bestimmten das DNA-Ploidieniveau der Proben durchflusszytometrisch, und es zeigte sich, dass alle gesammelten Proben diploid waren. Von drei Metapopulationen wurden Aussaaten kultiviert und die Pflanzen morphologisch untersucht. Hierbei zeigte sich, dass eine wenig verzweigte, hohe Wuchsform vorherrscht, die eher untypisch für A. arenosa ist.
    Type of Medium: Online Resource
    ISSN: 2698-9239 , 1863-155X
    Language: Unknown
    Publisher: University Library J. C. Senckenberg
    Publication Date: 2021
    detail.hit.zdb_id: 2830135-3
    SSG: 12
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